Template:F5samples

{{{id}}}
name	{{{name}}}
species	{{{sample_species}}}
hCAGE	{{{profile_hcage}}}
RNA-seq	{{{profile_rnaseq}}}
smallRNA seq	{{{profile_srnaseq}}}
nanoCAGEscan	{{{profile_cagescan}}}
sample detail
strain	{{{sample_strain}}}
tissue	{{{sample_tissue}}}
dev_stage	{{{sample_dev_stage}}}
sex	{{{sample_sex}}}
age	{{{sample_age}}}
ethnicity	{{{sample_ethnicity}}}
cell_type	{{{sample_cell_type}}}
cell_line	{{{sample_cell_line}}}
collaboration	{{{sample_collaboration}}}
Experimental condition	{{{sample_experimental_condition}}}
disease	{{{sample_disease}}}
cell_lot	{{{sample_cell_lot}}}
cell_catalog	{{{sample_cell_catalog}}}
company	{{{sample_company}}}
donor(cell lot)	{{{sample_donor(cell lot)}}}
Note	{{{sample_note}}}
RNA info
sample_id	{{{sample_id}}}
tube_id	{{{rna_tube_id}}}
box	{{{rna_box}}}
position	{{{rna_position}}}
lot_number	{{{rna_lot_number}}}
catalog_number	{{{rna_catalog_number}}}
RIN	{{{rna_rin}}}
OD260/230	{{{rna_od260/230}}}
OD260/280	{{{rna_od260/280}}}
sample_type	{{{rna_sample_type}}}
extraction_protocol	{{{rna_extraction_protocol}}}
weight_ug	{{{rna_weight_ug}}}
concentration	{{{rna_concentration}}}

{{{name}}}. Its transcriptome profile can be found in Genome Browsers ( zenbu and UCSC )

Specific TFs ... ... ...

Specific genes ... ... ...

Specific TSS regions ... ... ...

Specific motifs ... ... ...

De-novo motifs ... ... ...

Parent Ontologies

yes yes

Template:F5samples F5samples

10005-101B1, AoSMC response to FGF2, AoSMC response to IL1b, BMM TB activation IFNg, BMM TB activation IL13, BMM TB activation IL4, BMM TB activation IL4-IL13, BMM TB infection control, Broken/CanFam3::chr10:1130447..1130460,-, Broken/CanFam3::chr10:1130463..1130478,-, Broken/CanFam3::chr10:1130955..1130959,-, Broken/CanFam3::chr10:1131842..1131852,-, Broken/CanFam3::chr10:1131864..1131875,-, Broken/CanFam3::chr10:1131887..1131911,-, Broken/CanFam3::chr10:1131937..1131939,-, Broken/CanFam3::chr10:11346470..11346472,+, Broken/CanFam3::chr10:11364446..11364455,+, Broken/CanFam3::chr10:11364457..11364487,+, Broken/CanFam3::chr10:1141857..1141859,+, Broken/CanFam3::chr10:11445838..11445841,+, Broken/CanFam3::chr10:11445845..11445899,+, Broken/CanFam3::chr10:11560359..11560396,+, Broken/CanFam3::chr10:11673706..11673720,+, Broken/CanFam3::chr10:11673727..11673743,+, Broken/CanFam3::chr10:117029..117056,+, Broken/CanFam3::chr10:1191907..1191918,-, Broken/CanFam3::chr10:1193113..1193119,-, Broken/CanFam3::chr10:1193134..1193136,-, Broken/CanFam3::chr10:1193142..1193150,-, Broken/CanFam3::chr10:1193151..1193168,-, Broken/CanFam3::chr10:1194250..1194294,-, Broken/CanFam3::chr10:1200622..1200624,-, Broken/CanFam3::chr10:12057283..12057300,-, Broken/CanFam3::chr10:12057349..12057367,+, Broken/CanFam3::chr10:120909..120919,+, Broken/CanFam3::chr10:120961..120971,+, Broken/CanFam3::chr10:120973..120983,+, Broken/CanFam3::chr10:1226647..1226660,+, Broken/CanFam3::chr10:1245961..1245972,-, Broken/CanFam3::chr10:1245982..1245992,-, Broken/CanFam3::chr10:1246977..1246994,-, Broken/CanFam3::chr10:12482460..12482470,-, Broken/CanFam3::chr10:12482552..12482576,-, Broken/CanFam3::chr10:12482697..12482704,-, Broken/CanFam3::chr10:1259589..1259626,-, Broken/CanFam3::chr10:1259708..1259756,+, Broken/CanFam3::chr10:1260223..1260237,+, Broken/CanFam3::chr10:1260239..1260276,+, Broken/CanFam3::chr10:1260382..1260410,+, Broken/CanFam3::chr10:1260414..1260429,+... further results