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MacroAPE 1083:GGAGKYTTAA,motif746: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;127.748;168.768;874.312;1.172!2;236.744;93.76;616.472;225.024!3;554.356;166.424;325.816;125.404!4;133.608;113.684;802.82;121.888!5;103.136;2...")
 
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;0.398131!10788-110H5;0.469148!10792-110H9;0.365007!10765-110E9;0.828222!10829-111D1;0.975756!10830-111D2;0.50184!10831-111D3;0.444216!10832-111D4;0.86768!10833-111D5;0.80824!10764-110E8;0.637143!10770-110F5;0.412515!10399-106A3;0.266845!10400-106A4;0.959155!10405-106A9;0.814459!10834-111D6;0.753103!10835-111D7;0.692876!10836-111D8;0.344347!10837-111D9;0.802423!10699-109G6;0.926571!10802-111A1;0.549564!10796-110I4;0.917423!10010-101C1;0.164642!10810-111A9;0.413873!10421-106C7;0.845606!10708-109H6;0.753437!12235-129G3;0.634662!12236-129G4;0.722693!12237-129G5;0.466517!10167-103B5;0.347947!10151-102I7;0.147002!10428-106D5;0.237637!10795-110I3;0.929554!10805-111A4;0.440482!10052-101G7;0.127665!10189-103D9;0.592376!10589-108D4;0.344679!10425-106D2;0.917724!10427-106D4;0.421176!10702-109G9;0.639248!10432-106D9;0.574375!10496-107C1;0.944669!10718-109I7;0.558438!10011-101C2;0.641063!10053-101G8;0.746565!10686-109F2;0.857423!10084-102B3;0.105111!10012-101C3;0.275006!10085-102B4;0.213241!10482-107A5;0.583691!10419-106C5;0.347971!10080-102A8;0.237223!10760-110E4;0.822048!10709-109H7;0.823273!10710-109H8;0.253858!10703-109H1;0.0082294!10719-109I8;0.567983!10642-109A3;0.510021!10177-103C6;0.926041!10164-103B2;0.253129!10173-103C2;0.251177!10166-103B4;0.215047!10083-102B2;0.250014!10188-103D8;0.236035!10552-107I3;0.254272!10553-107I4;0.193925!10013-101C4;0.452472!10536-107G5;0.701904!10618-108G6;0.733557!10423-106C9;0.889627!10785-110H2;0.645435!12238-129G6;0.888709!12239-129G7;0.784753!12240-129G8;0.831737!10416-106C2;0.62765!10801-110I9;0.565073!10766-110F1;0.989966!10824-111C5;0.653003!10825-111C6;0.670756!10826-111C7;0.677569!10454-106G4;0.910156!10409-106B4;0.607913!10638-108I8;0.716707!10636-108I6;0.7421!10513-107D9;0.731507!10420-106C6;0.963984!10082-102B1;0.949847!10014-101C5;0.54036!10070-101I7;0.621021!10452-106G2;0.656753!10453-106G3;0.215647!10449-106F8;0.581836!10042-101F6;0.704174!10069-101I6;0.546857!10193-103E4;0.639597!10631-108I1;0.359649!10438-106E6;0.750552!10488-107B2;0.50532!10196-103E7;0.472903!10071-101I8;0.522728!10071-101I8;0.274949!10041-101F5;0.77424!10451-106G1;0.767626!10450-106F9;0.614598!10604-108F1;0.338543!10605-108F2;0.537059!10606-108F3;0.582167!10603-108E9;0.589847!10497-107C2;0.594282!10448-106F7;0.896203!10643-109A4;0.706952!10426-106D3;0.316865!10431-106D8;0.692934!10197-103E8;0.928849!10443-106F2;0.299237!10815-111B5;0.655115!10816-111B6;0.513789!10817-111B7;0.415808!10015-101C6;0.559333!10410-106B5;0.597873!10054-101G9;0.513395!10758-110E2;0.391489!10711-109H9;0.339882!10040-101F4;0.0273413!10470-106I2;0.288143!10415-106C1;0.303514!10198-103E9;0.430307!10614-108G2;0.901329!10612-108F9;0.32686!10549-107H9;0.33891!10615-108G3;0.811919!10487-107B1;0.254574!10433-106E1;0.591889!10688-109F4;0.568698!10444-106F3;0.433079!10444-106F3;0.699412!10485-107A8;0.596255!10413-106B8;0.933328!10175-103C4;0.365783!10161-103A8;0.392601!12131-128D7;0.370559!10624-108H3;0.851474!10712-109I1;0.968009!10205-103F7;0.774433!10206-103F8;0.42763!10207-103F9;0.210517!10050-101G5;0.80914!10051-101G6;0.0931598!10016-101C7;0.293934!10046-101G1;0.509237!10778-110G4;0.960747!10633-108I3;0.492083!10818-111B8;0.464844!10819-111B9;0.581516!10820-111C1;0.560017!10484-107A7;0.572328!10808-111A7;0.574929!10169-103B7;0.955123!10153-102I9;0.192372!13425-144D5;0.296822!13433-144E4;0.875247!13437-144E8;0.785785!11904-125F5;0.757546!11905-125F6;0.53839!10039-101F3;0.896351!10791-110H8;0.307117!10017-101C8;0.167377!10045-101F9;0.474805!10509-107D5;0.619483!10839-111E2;0.873657!10692-109F8;0.0819146!10079-102A7;0.654979!10078-102A6;0.227461!10721-110A1;0.181533!10569-108B2;0.21712!10570-108B3;0.840232!10571-108B4;0.330729!10647-109A8;0.647572!10752-110D5;0.338857!10782-110G8;0.881264!10726-110A6;0.338083!10018-101C9;0.340625!10086-102B5;0.39992!10182-103D2;0.991906!10165-103B3;0.392301!10499-107C4;0.438833!10408-106B3;0.0991767!10019-101D1;0.943161!10068-101I5;0.977531!10075-102A3;0.674371!10077-102A5;0.79203!10727-110A7;0.710605!10775-110G1;0.914572!10412-106B7;0.95727!12231-129F8;0.785385!12232-129F9;0.377106!12233-129G1;0.314762!12234-129G2;0.308157!10414-106B9;0.340804!10170-103B8;0.699371!10183-103D3;0.246171!10150-102I6;0.186934!10174-103C3;0.18314!10155-103A2;0.505606!10038-101F2;0.531434!10838-111E1;0.589366!10759-110E3;0.86872!10514-107E1;0.526161!10465-106H6;0.203552!10691-109F7;0.228029!10843-111E6;0.865391!10844-111E7;0.607714!11747-123G1;0.276799!11748-123G2;0.410359!11749-123G3;0.924054!11750-123G4;0.777168!11751-123G5;0.294058!11840-124H4;0.63798!11752-123G6;0.895772!11753-123G7;0.436443!11754-123G8;0.932313!11755-123G9;0.525794!11756-123H1;0.26923!11833-124G6;0.378807!11760-123H5;0.549527!11836-124G9;0.370026!11758-123H3;0.897685!11835-124G8;0.698117!11762-123H7;0.804222!11838-124H2;0.747636!11757-123H2;0.383515!11759-123H4;0.781899!11761-123H6;0.471992!11842-124H6;0.837883!11837-124H1;0.740566!10568-108B1;0.678773!13230-141I8;0.64576!13231-141I9;0.788441!10696-109G3;0.865418!10493-107B7;0.415876!10494-107B8;0.318819!10850-111F4;0.923802!10851-111F5;0.541016!10852-111F6;0.86058!10853-111F7;0.719778!10854-111F8;0.732784!10855-111F9;0.367282!10856-111G1;0.748355!10847-111F1;0.583147!10846-111E9;0.164756!10848-111F2;0.96381!10845-111E8;0.181723!10857-111G2;0.495249!10858-111G3;0.799486!10156-103A3;0.877867!11901-125F2;0.249721!11902-125F3;0.882707!11903-125F4;0.878504!10689-109F5;0.960966!10648-109A9;0.265901!10784-110H1;0.396904!10744-110C6;0.700989!10772-110F7;0.939352!10474-106I6;0.806053!10600-108E6;0.443848!10684-109E9;0.380896!12226-129F3;0.0286865!12227-129F4;0.0193911!10508-107D4;0.965851!10539-107G8;0.964177!10607-108F4;0.976354!10555-107I6;0.992644!10774-110F9;0.835204!10637-108I7;0.451645!10663-109C6;0.396193!10728-110A8;0.644434!10729-110A9;0.613172!10430-106D7;0.811966!10730-110B1;0.833961!10813-111B3;0.555321!10812-111B2;0.939141!10037-101F1;0.963835!10172-103C1;0.339515!10163-103B1;0.215402!10076-102A4;0.343498!10073-102A1;0.347458!10036-101E9;0.896246!10195-103E6;0.35649!10277-104E7;0.248868!10434-106E2;0.35512!10550-107I1;0.457137!10545-107H5;0.318774!10544-107H4;0.419837!10704-109H2;0.933158!10510-107D6;0.0784084!10558-107I9;0.37243!10020-101D2;0.110414!10732-110B3;0.878077!10049-101G4;0.0533206!10698-109G5;0.602328!10437-106E5;0.807401!10417-106C3;0.703262!10035-101E8;0.210739!10171-103B9;0.341242!10157-103A4;0.287828!10034-101E7;0.235258!10072-101I9;0.376822!10199-103F1;0.791131!10200-103F2;0.183561!10697-109G4;0.313021!10723-110A3;0.492031!10179-103C8;0.306903!10160-103A7;0.777257!10180-103C9;0.898123!10162-103A9;0.836616!10021-101D3;0.826369!10840-111E3;0.653611!10706-109H4;0.332606!10033-101E6;0.653181!10032-101E5;0.521054!10490-107B4;0.31964!10439-106E7;0.0735938!10022-101D4;0.440825!10176-103C5;0.537805!10469-106I1;0.265124!10067-101I4;0.523849!10411-106B6;0.542204!10471-106I3;0.394069!10030-101E3;0.561866!10475-106I7;0.601456!10787-110H4;0.735328!10477-106I9;0.626357!10695-109G2;0.227322!11771-123I7;0.54327!11772-123I8;0.00772759!11773-123I9;0.0911819!10093-102C3;0.125029!10442-106F1;0.361239!10442-106F1;0.210467!10201-103F3;0.318645!10639-108I9;0.403616!11843-124H7;0.360134!11841-124H5;0.821255!10693-109F9;0.971473!10436-106E4;0.201534!10483-107A6;0.719745!10282-104F3;0.615184!10023-101D5;0.165703!10066-101I3;0.447563!10065-101I2;0.935324!10800-110I8;0.486758!10610-108F7;0.71229!10841-111E4;0.681469!10541-107H1;0.990225!10842-111E5;0.336646!10562-108A4;0.752745!10024-101D6;0.43719!10064-101I1;0.411197!10609-108F6;0.34755!10048-101G3;0.656743!10781-110G7;0.746644!10181-103D1;0.878481!10159-103A6;0.574317!10056-101H2;0.771126!10737-110B8;0.810184!10025-101D7;0.92926!10044-101F8;0.742438!10424-106D1;0.31497!10463-106H4;0.648481!10616-108G4;0.441434!10486-107A9;0.925446!10062-101H8;0.338214!10202-103F4;0.399925!10158-103A5;0.360424!10441-106E9;0.712118!10031-101E4;0.00989284!10063-101H9;0.311296!10063-101H9;0.822926!11763-123H8;0.447082!11765-123I1;0.705214!11768-123I4;0.727703!10807-111A6;0.628132!10790-110H7;0.28283!10798-110I6;0.223493!10786-110H3;0.141845!10591-108D6;0.581169!10593-108D8;0.0436889!10590-108D5;0.640755!10026-101D8;0.209497!10096-102C6;0.369168!10168-103B6;0.280559!10154-103A1;0.343547!10209-103G2;0.398523!10061-101H7;0.338045!10027-101D9;0.852869!10043-101F7;0.24697!10783-110G9;0.233289!10028-101E1;0.90547!10060-101H6;0.556022!10203-103F5;0.76623!10059-101H5;0.180602!10047-101G2;0.370861!10029-101E2;0.591988!10058-101H4;0.826835!10418-106C4;0.757245!10492-107B6;0.599387!10694-109G1;0.746096!10797-110I5;0.4987!10057-101H3;0.882362!10100-102D1;0.703723!10055-101H1;0.856951!10204-103F6;0.795733!10191-103E2;0.660767!10563-108A5;0.675539
|name=GGAGKYTTAA,motif746,CNhs12060,T:1172.0(41.98%),B:22540.9(31.85%),P:1e-28
|name=GGAGKYTTAA,motif746,CNhs12060,T:1172.0(41.98%),B:22540.9(31.85%),P:1e-28
|tomtom_result=SMP1#MA0383.1;1;0.00686085;3.26577;1;10;GGAGGTTTAA;TGCTAATTTAATTATAGGTAA;-!ARID3A#MA0151.1;-5;0.0092263;4.39172;1;5;GGAGGTTTAA;TTTAAT;-!YPR015C#MA0435.1;1;0.0102669;4.88706;1;10;GGAGGTTTAA;TGAAGACGTAAATCCTTACA;+!MZF1_5-13#MA0057.1;0;0.0114214;5.4366;1;10;GGAGGTTTAA;GGAGGGGGAA;+!Ptx1#MA0201.1;-3;0.0176904;8.42065;1;7;GGAGGTTTAA;GGATTAA;-!Tal1::Gata1#MA0140.1;2;0.0197153;9.38447;1;10;GGAGGTTTAA;CTGGTGGGGACAGATAAG;+!GSM1#MA0308.1;8;0.0209071;9.95178;1;10;GGAGGTTTAA;TATACTCCGGAGTTTTTTAAT;-
}}
}}

Latest revision as of 12:14, 7 September 2012

Full Name: GGAGKYTTAA,motif746,CNhs12060,T:1172.0(41.98%),B:22540.9(31.85%),P:1e-28

Motif matrix
POACGT
1127.748168.768874.3121.172
2236.74493.76616.472225.024
3554.356166.424325.816125.404
4133.608113.684802.82121.888
5103.136207.444437.156424.264
6113.684477.0041.172580.14
71.17267.976404.34698.512
8141.8121.172301.204727.812
91147.38822.2681.1721.172
101048.941.1721.172120.716

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SMP1#MA0383.110.006860853.26577110GGAGGTTTAATGCTAATTTAATTATAGGTAA-
ARID3A#MA0151.1-50.00922634.3917215GGAGGTTTAATTTAAT-
YPR015C#MA0435.110.01026694.88706110GGAGGTTTAATGAAGACGTAAATCCTTACA+
MZF1_5-13#MA0057.100.01142145.4366110GGAGGTTTAAGGAGGGGGAA+
Ptx1#MA0201.1-30.01769048.4206517GGAGGTTTAAGGATTAA-
Tal1::Gata1#MA0140.120.01971539.38447110GGAGGTTTAACTGGTGGGGACAGATAAG+
GSM1#MA0308.180.02090719.95178110GGAGGTTTAATATACTCCGGAGTTTTTTAAT-
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