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MacroAPE 1083:FOXA1 LNCAP-FOXA1-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;15605;840;323;15541!2;20807;2165;7754;1583!3;18545;65;3586;10113!4;4136;32;28109;32!5;32;4911;32;27334!6;28853;3392;32;32!7;31308;937;32;32!...")
 
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69-118A1;0.780242!11441-118I1;0.0797353!10007-101B4;0.583358!11520-119H8;5.55697e-05!11600-120H7;0.291732!11681-122H7;0.174211!11216-116B1;0.0725883!12179-129A1;0.708255!12180-129A2;0.000664616!12181-129A3;0.00054544!12176-128I7;0.000598656!12177-128I8;0.00168265!12182-129A4;0.000433767!12183-129A5;0.000495089!12184-129A6;0.000551307!10809-111A8;0.00236246!10597-108E3;0.041485!10717-109I6;0.368852!10455-106G5;0.398502!10534-107G3;0.437868!10429-106D6;0.509005!10464-106H5;0.265004!10827-111C8;0.474091!10789-110H6;0.757472!10828-111C9;0.90143!10788-110H5;0.5926!10792-110H9;0.369248!10765-110E9;0.243418!10829-111D1;0.823066!10830-111D2;0.454952!10831-111D3;0.201418!10832-111D4;0.438833!10833-111D5;0.585255!10764-110E8;0.743449!10770-110F5;0.0905829!10399-106A3;0.138886!10400-106A4;0.0587215!10405-106A9;0.105938!10834-111D6;0.12159!10835-111D7;0.0459705!10836-111D8;0.425818!10837-111D9;0.972367!10699-109G6;0.0919403!10802-111A1;0.28205!10796-110I4;0.0325149!10010-101C1;0.62621!10810-111A9;0.0536453!10421-106C7;0.0256923!10708-109H6;0.598006!12235-129G3;0.852383!12236-129G4;0.925382!12237-129G5;0.257603!10167-103B5;0.741106!10151-102I7;0.125904!10428-106D5;0.454444!10795-110I3;0.458415!10805-111A4;0.201871!10052-101G7;0.770404!10189-103D9;0.219428!10589-108D4;0.00371954!10425-106D2;0.22355!10427-106D4;0.715151!10702-109G9;0.710638!10432-106D9;0.3334!10496-107C1;0.948285!10718-109I7;0.136348!10011-101C2;0.55503!10053-101G8;0.207674!10686-109F2;0.0532331!10084-102B3;0.612462!10012-101C3;0.413683!10085-102B4;0.234876!10482-107A5;0.0755449!10419-106C5;0.140464!10080-102A8;0.219495!10760-110E4;0.0768032!10709-109H7;0.120229!10710-109H8;0.864134!10703-109H1;0.362471!10719-109I8;0.0385899!10642-109A3;0.566587!10177-103C6;0.115258!10164-103B2;0.310777!10173-103C2;0.371211!10166-103B4;0.998324!10083-102B2;0.57251!10188-103D8;0.426963!10552-107I3;0.115706!10553-107I4;0.661919!10013-101C4;0.909099!10536-107G5;0.436697!10618-108G6;0.539516!10423-106C9;0.436716!10785-110H2;0.495332!12238-129G6;0.7206!12239-129G7;0.412017!12240-129G8;0.144622!10416-106C2;0.237273!10801-110I9;0.7444!10766-110F1;0.180079!10824-111C5;0.278778!10825-111C6;0.0710824!10826-111C7;0.0765172!10454-106G4;0.114759!10409-106B4;0.144478!10638-108I8;0.406583!10636-108I6;0.30362!10513-107D9;0.522511!10420-106C6;0.121476!10082-102B1;0.958912!10014-101C5;0.215162!10070-101I7;0.0048205!10452-106G2;0.0566743!10453-106G3;0.018171!10449-106F8;0.222598!10042-101F6;0.341297!10069-101I6;0.974043!10193-103E4;0.745341!10631-108I1;0.231469!10438-106E6;0.499788!10488-107B2;0.23207!10196-103E7;0.225487!10071-101I8;0.536563!10071-101I8;0.0390464!10041-101F5;0.134321!10451-106G1;0.810248!10450-106F9;0.563207!10604-108F1;0.126777!10605-108F2;0.850839!10606-108F3;0.742086!10603-108E9;0.843033!10497-107C2;0.614043!10448-106F7;0.580564!10643-109A4;0.471501!10426-106D3;0.928666!10431-106D8;0.620452!10197-103E8;0.716162!10443-106F2;0.881679!10815-111B5;0.908958!10816-111B6;0.418039!10817-111B7;0.676882!10015-101C6;0.264582!10410-106B5;0.255495!10054-101G9;0.705702!10758-110E2;0.224116!10711-109H9;0.544889!10040-101F4;0.257647!10470-106I2;0.191934!10415-106C1;0.449678!10198-103E9;0.852202!10614-108G2;0.00374258!10612-108F9;0.930942!10549-107H9;0.751933!10615-108G3;0.973709!10487-107B1;0.521307!10433-106E1;0.369025!10688-109F4;0.585937!10444-106F3;0.91832!10444-106F3;0.0658671!10485-107A8;0.133375!10413-106B8;0.891756!10175-103C4;0.384595!10161-103A8;0.415637!12131-128D7;0.910932!10624-108H3;0.0555985!10712-109I1;0.625371!10205-103F7;0.458886!10206-103F8;0.764724!10207-103F9;0.610991!10050-101G5;0.62706!10051-101G6;0.874594!10016-101C7;0.618753!10046-101G1;0.410241!10778-110G4;0.417537!10633-108I3;0.177205!10818-111B8;0.00291439!10819-111B9;0.18793!10820-111C1;0.274983!10484-107A7;0.197045!10808-111A7;0.285029!10169-103B7;0.449952!10153-102I9;0.164792!13425-144D5;0.518954!13433-144E4;0.360961!13437-144E8;0.524527!11904-125F5;0.47604!11905-125F6;0.0211858!10039-101F3;0.019506!10791-110H8;0.191195!10017-101C8;0.566367!10045-101F9;0.82531!10509-107D5;0.708951!10839-111E2;0.130348!10692-109F8;0.637309!10079-102A7;0.941665!10078-102A6;0.785264!10721-110A1;0.868644!10569-108B2;0.110116!10570-108B3;0.0123782!10571-108B4;0.0506884!10647-109A8;0.00367972!10752-110D5;0.98564!10782-110G8;0.616149!10726-110A6;0.186997!10018-101C9;0.752456!10086-102B5;1.49276e-05!10182-103D2;0.0247307!10165-103B3;0.519601!10499-107C4;0.734037!10408-106B3;0.886406!10019-101D1;0.604402!10068-101I5;0.0207239!10075-102A3;0.0410931!10077-102A5;0.0192005!10727-110A7;0.0117624!10775-110G1;0.424112!10412-106B7;0.804339!12231-129F8;0.00230427!12232-129F9;0.00339075!12233-129G1;0.00580371!12234-129G2;0.00891457!10414-106B9;0.00524994!10170-103B8;0.147767!10183-103D3;0.154544!10150-102I6;0.207412!10174-103C3;0.470865!10155-103A2;0.390522!10038-101F2;0.915408!10838-111E1;0.634938!10759-110E3;0.214759!10514-107E1;0.459884!10465-106H6;0.854977!10691-109F7;0.655375!10843-111E6;0.0536355!10844-111E7;0.219748!11747-123G1;0.64577!11748-123G2;0.0661462!11749-123G3;0.318799!11750-123G4;0.172593!11751-123G5;0.162941!11840-124H4;0.0805627!11752-123G6;0.181474!11753-123G7;0.63197!11754-123G8;0.252441!11755-123G9;0.123387!11756-123H1;0.0573947!11833-124G6;0.317581!11760-123H5;0.995027!11836-124G9;0.0717752!11758-123H3;0.0610371!11835-124G8;0.0447214!11762-123H7;0.184274!11838-124H2;0.347362!11757-123H2;0.284768!11759-123H4;0.0378583!11761-123H6;0.14221!11842-124H6;0.16676!11837-124H1;0.526333!10568-108B1;0.267791!13230-141I8;0.0275318!13231-141I9;0.0642637!10696-109G3;0.0304984!10493-107B7;0.670721!10494-107B8;0.208852!10850-111F4;0.271975!10851-111F5;0.457562!10852-111F6;0.432678!10853-111F7;0.907617!10854-111F8;0.75944!10855-111F9;0.262402!10856-111G1;0.0967108!10847-111F1;0.958314!10846-111E9;0.171909!10848-111F2;0.238764!10845-111E8;0.606483!10857-111G2;0.300916!10858-111G3;0.456848!10156-103A3;0.925806!11901-125F2;0.484697!11902-125F3;0.126694!11903-125F4;0.396685!10689-109F5;0.378468!10648-109A9;0.3806!10784-110H1;0.241727!10744-110C6;0.849271!10772-110F7;0.878368!10474-106I6;0.34994!10600-108E6;0.305186!10684-109E9;0.335052!12226-129F3;0.0469972!12227-129F4;0.87198!10508-107D4;0.803693!10539-107G8;0.197689!10607-108F4;0.12573!10555-107I6;0.0719255!10774-110F9;0.269148!10637-108I7;0.396571!10663-109C6;0.922637!10728-110A8;0.77392!10729-110A9;0.588631!10430-106D7;0.0506543!10730-110B1;0.239437!10813-111B3;0.136575!10812-111B2;0.209267!10037-101F1;0.628235!10172-103C1;0.2578!10163-103B1;0.128234!10076-102A4;0.712363!10073-102A1;0.220709!10036-101E9;0.110806!10195-103E6;0.14249!10277-104E7;0.212634!10434-106E2;0.476449!10550-107I1;0.690434!10545-107H5;0.937043!10544-107H4;0.882275!10704-109H2;0.835699!10510-107D6;0.486342!10558-107I9;0.725134!10020-101D2;0.486756!10732-110B3;0.670251!10049-101G4;0.0347476!10698-109G5;0.00200374!10437-106E5;0.609638!10417-106C3;0.265818!10035-101E8;0.0188342!10171-103B9;0.179043!10157-103A4;0.339503!10034-101E7;0.433305!10072-101I9;0.24756!10199-103F1;0.0942064!10200-103F2;0.0114812!10697-109G4;0.410206!10723-110A3;0.390322!10179-103C8;0.745259!10160-103A7;0.181026!10180-103C9;0.398746!10162-103A9;0.911581!10021-101D3;0.686549!10840-111E3;0.302829!10706-109H4;0.655597!10033-101E6;0.13353!10032-101E5;0.510611!10490-107B4;0.158084!10439-106E7;0.130255!10022-101D4;0.979406!10176-103C5;0.0825251!10469-106I1;0.146529!10067-101I4;0.932685!10411-106B6;0.601109!10471-106I3;0.0681845!10030-101E3;0.152636!10475-106I7;0.0997109!10787-110H4;0.153524!10477-106I9;0.251207!10695-109G2;0.0193506!11771-123I7;0.774121!11772-123I8;0.188353!11773-123I9;0.397131!10093-102C3;0.576727!10442-106F1;0.00518616!10442-106F1;0.466463!10201-103F3;0.539384!10639-108I9;0.523252!11843-124H7;0.169318!11841-124H5;0.141522!10693-109F9;0.0150896!10436-106E4;0.642659!10483-107A6;0.30316!10282-104F3;0.541201!10023-101D5;0.263472!10066-101I3;0.211031!10065-101I2;0.29999!10800-110I8;0.827851!10610-108F7;0.884413!10841-111E4;0.966323!10541-107H1;0.0594135!10842-111E5;0.177799!10562-108A4;0.324924!10024-101D6;0.564618!10064-101I1;0.00159051!10609-108F6;0.406076!10048-101G3;0.592827!10781-110G7;0.404033!10181-103D1;0.852537!10159-103A6;0.72041!10056-101H2;0.513683!10737-110B8;0.073545!10025-101D7;0.133246!10044-101F8;0.0112948!10424-106D1;0.0162567!10463-106H4;0.838874!10616-108G4;0.19788!10486-107A9;0.93354!10062-101H8;0.743675!10202-103F4;0.00045819!10158-103A5;0.00154099!10441-106E9;0.426098!10031-101E4;0.561572!10063-101H9;0.118642!10063-101H9;0.12168!11763-123H8;0.00894402!11765-123I1;0.158007!11768-123I4;0.446282!10807-111A6;0.0862451!10790-110H7;0.0702486!10798-110I6;0.024021!10786-110H3;0.188081!10591-108D6;0.909819!10593-108D8;0.857131!10590-108D5;0.453656!10026-101D8;0.503502!10096-102C6;0.726049!10168-103B6;0.415462!10154-103A1;0.482657!10209-103G2;0.970946!10061-101H7;0.0306962!10027-101D9;0.672504!10043-101F7;0.00042316!10783-110G9;6.93345e-05!10028-101E1;0.957724!10060-101H6;0.230049!10203-103F5;0.778736!10059-101H5;0.154603!10047-101G2;0.385456!10029-101E2;0.00013776!10058-101H4;0.0038915!10418-106C4;0.270041!10492-107B6;0.250011!10694-109G1;0.420447!10797-110I5;0.53227!10057-101H3;0.991293!10100-102D1;0.355238!10055-101H1;0.506817!10204-103F6;0.108946!10191-103E2;0.422102!10563-108A5;0.0187348
|name=FOXA1_LNCAP-FOXA1-ChIP-Seq/Homer
|name=FOXA1_LNCAP-FOXA1-ChIP-Seq/Homer
|tomtom_result=Foxa2#MA0047.2;2;1.57604e-12;7.50196e-10;1.481e-09;10;AAAGTAAACA;CCTAAGTAAACA;-!FOXA1#MA0148.1;1;2.74075e-09;1.3046e-06;1.28774e-06;10;AAAGTAAACA;CAAAGTAAACA;-!FKH2#MA0297.1;-3;1.23738e-06;0.000588993;0.000387588;7;AAAGTAAACA;GTAAACA;+!fkh#MA0446.1;1;4.36303e-06;0.0020768;0.00102498;10;AAAGTAAACA;TTAAGCAAACA;-!slp1#MA0458.1;0;1.05031e-05;0.00499949;0.00197395;10;AAAGTAAACA;AATGTAAACAA;-!FKH1#MA0296.1;3;2.5415e-05;0.0120976;0.00394188;10;AAAGTAAACA;TGAATTGTAAACAAAGAGGA;+!FOXD1#MA0031.1;-3;2.93639e-05;0.0139772;0.00394188;7;AAAGTAAACA;GTAAACAT;+!FOXO3#MA0157.1;-2;5.31832e-05;0.0253152;0.00624702;8;AAAGTAAACA;TGTAAACA;+!Foxa2#MA0047.2;-1;6.21599e-05;0.0295881;0.00627884;9;AAAGTAAACA;AAGTAAATATTG;-!FOXF2#MA0030.1;2;6.68176e-05;0.0318052;0.00627884;10;AAAGTAAACA;CAAACGTAAACAAT;+!br_Z4#MA0013.1;-1;0.000247412;0.117768;0.0211357;9;AAAGTAAACA;TAGTAAACAAA;+!Foxd3#MA0041.1;-1;0.000483877;0.230326;0.0378916;9;AAAGTAAACA;AAACAAACATTC;-!FOXI1#MA0042.1;-1;0.000555173;0.264262;0.0401304;9;AAAGTAAACA;AAACAAACATCC;-!HCM1#MA0317.1;-3;0.000661718;0.314978;0.0444154;7;AAAGTAAACA;ATAAACAA;+!Foxq1#MA0040.1;-2;0.00145839;0.694192;0.0913629;8;AAAGTAAACA;AATAAACAATA;-!SRY#MA0084.1;-3;0.00218482;1.03998;0.128317;7;AAAGTAAACA;GTAAACAAT;+!mirr#MA0233.1;-5;0.00423152;2.0142;0.233903;5;AAAGTAAACA;AAACA;+!ara#MA0210.1;-5;0.00639859;3.04573;0.334042;5;AAAGTAAACA;TAACA;+!YAP7#MA0419.1;1;0.013576;6.46219;0.654008;10;AAAGTAAACA;ATTAGTAAGCA;+!HMG-I/Y#MA0045.1;5;0.0139195;6.62569;0.654008;10;AAAGTAAACA;CAACAAATGGAAAAAC;+!ELF5#MA0136.1;-1;0.019024;9.05543;0.828698;9;AAAGTAAACA;AAGGAAGTA;-!CG11617#MA0173.1;-1;0.0199761;9.50862;0.828698;7;AAAGTAAACA;ATGTTAA;-!caup#MA0217.1;-5;0.0202832;9.65478;0.828698;5;AAAGTAAACA;TAACA;+
}}
}}

Latest revision as of 12:20, 7 September 2012

Full Name: FOXA1_LNCAP-FOXA1-ChIP-Seq/Homer

Motif matrix
POACGT
11560584032315541
220807216577541583
31854565358610113
44136322810932
53249113227334
62885333923232
7313089373232
832213323232
93225040327205
1032213323232

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Foxa2#MA0047.221.57604e-127.50196e-101.481e-0910AAAGTAAACACCTAAGTAAACA-
FOXA1#MA0148.112.74075e-091.3046e-061.28774e-0610AAAGTAAACACAAAGTAAACA-
FKH2#MA0297.1-31.23738e-060.0005889930.0003875887AAAGTAAACAGTAAACA+
fkh#MA0446.114.36303e-060.00207680.0010249810AAAGTAAACATTAAGCAAACA-
slp1#MA0458.101.05031e-050.004999490.0019739510AAAGTAAACAAATGTAAACAA-
FKH1#MA0296.132.5415e-050.01209760.0039418810AAAGTAAACATGAATTGTAAACAAAGAGGA+
FOXD1#MA0031.1-32.93639e-050.01397720.003941887AAAGTAAACAGTAAACAT+
FOXO3#MA0157.1-25.31832e-050.02531520.006247028AAAGTAAACATGTAAACA+
Foxa2#MA0047.2-16.21599e-050.02958810.006278849AAAGTAAACAAAGTAAATATTG-
FOXF2#MA0030.126.68176e-050.03180520.0062788410AAAGTAAACACAAACGTAAACAAT+
br_Z4#MA0013.1-10.0002474120.1177680.02113579AAAGTAAACATAGTAAACAAA+
Foxd3#MA0041.1-10.0004838770.2303260.03789169AAAGTAAACAAAACAAACATTC-
FOXI1#MA0042.1-10.0005551730.2642620.04013049AAAGTAAACAAAACAAACATCC-
HCM1#MA0317.1-30.0006617180.3149780.04441547AAAGTAAACAATAAACAA+
Foxq1#MA0040.1-20.001458390.6941920.09136298AAAGTAAACAAATAAACAATA-
SRY#MA0084.1-30.002184821.039980.1283177AAAGTAAACAGTAAACAAT+
mirr#MA0233.1-50.004231522.01420.2339035AAAGTAAACAAAACA+
ara#MA0210.1-50.006398593.045730.3340425AAAGTAAACATAACA+
YAP7#MA0419.110.0135766.462190.65400810AAAGTAAACAATTAGTAAGCA+
HMG-I/Y#MA0045.150.01391956.625690.65400810AAAGTAAACACAACAAATGGAAAAAC+
ELF5#MA0136.1-10.0190249.055430.8286989AAAGTAAACAAAGGAAGTA-
CG11617#MA0173.1-10.01997619.508620.8286987AAAGTAAACAATGTTAA-
caup#MA0217.1-50.02028329.654780.8286985AAAGTAAACATAACA+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:FOXA1_LNCAP-FOXA1-ChIP-Seq/Homer&oldid=2133620"