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MacroAPE 1083:Motif CTNGAT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;496;0;0!02;0;0;0;496!03;124;124;124;124!04;0;0;496;0!05;496;0;0;0!06;0;0;0;496 |macroape_1083_sample_pvalues=11376-118A8;0.765551!11327-...")
 
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107B8;0.0997558!10850-111F4;0.701376!10851-111F5;0.416291!10852-111F6;0.0634087!10853-111F7;0.093217!10854-111F8;0.0708529!10855-111F9;0.274923!10856-111G1;0.580419!10847-111F1;0.124198!10846-111E9;0.0324865!10848-111F2;0.181441!10845-111E8;0.214059!10857-111G2;0.137287!10858-111G3;0.523147!10156-103A3;0.064752!11901-125F2;0.999736!11902-125F3;0.631282!11903-125F4;0.511006!10689-109F5;0.594627!10648-109A9;0.389751!10784-110H1;0.427186!10744-110C6;0.751781!10772-110F7;0.403807!10474-106I6;0.979851!10600-108E6;0.585144!10684-109E9;0.475545!12226-129F3;0.142835!12227-129F4;0.853741!10508-107D4;0.208774!10539-107G8;0.864329!10607-108F4;0.822469!10555-107I6;0.96406!10774-110F9;0.817971!10637-108I7;0.643548!10663-109C6;0.720408!10728-110A8;0.974119!10729-110A9;0.93187!10430-106D7;0.943501!10730-110B1;0.754023!10813-111B3;0.364166!10812-111B2;0.72848!10037-101F1;0.086935!10172-103C1;0.923471!10163-103B1;0.803459!10076-102A4;0.891572!10073-102A1;0.795717!10036-101E9;0.831502!10195-103E6;0.94155!10277-104E7;0.911392!10434-106E2;0.23107!10550-107I1;0.375772!10545-107H5;0.578356!10544-107H4;0.830679!10704-109H2;0.623335!10510-107D6;0.288927!10558-107I9;0.343084!10020-101D2;0.733963!10732-110B3;0.641211!10049-101G4;0.172774!10698-109G5;0.800399!10437-106E5;0.433395!10417-106C3;0.406398!10035-101E8;0.658224!10171-103B9;0.844!10157-103A4;0.964048!10034-101E7;0.881495!10072-101I9;0.947281!10199-103F1;0.89655!10200-103F2;0.139622!10697-109G4;0.834244!10723-110A3;0.647422!10179-103C8;0.236596!10160-103A7;0.761965!10180-103C9;0.957159!10162-103A9;0.201607!10021-101D3;0.4581!10840-111E3;0.973732!10706-109H4;0.588979!10033-101E6;0.655244!10032-101E5;0.873789!10490-107B4;0.942486!10439-106E7;0.412049!10022-101D4;0.747497!10176-103C5;0.571434!10469-106I1;0.929242!10067-101I4;0.350097!10411-106B6;0.834956!10471-106I3;0.309954!10030-101E3;0.500281!10475-106I7;0.844243!10787-110H4;0.571416!10477-106I9;0.14723!10695-109G2;0.988891!11771-123I7;0.843462!11772-123I8;0.459825!11773-123I9;0.382536!10093-102C3;0.37672!10442-106F1;0.0580769!10442-106F1;0.646991!10201-103F3;0.598002!10639-108I9;0.246538!11843-124H7;0.321664!11841-124H5;0.464085!10693-109F9;0.0477516!10436-106E4;0.963403!10483-107A6;0.908039!10282-104F3;0.947912!10023-101D5;0.951988!10066-101I3;0.648352!10065-101I2;0.982266!10800-110I8;0.278527!10610-108F7;0.38281!10841-111E4;0.328874!10541-107H1;0.591189!10842-111E5;0.92896!10562-108A4;0.887437!10024-101D6;0.990709!10064-101I1;0.812304!10609-108F6;0.982727!10048-101G3;0.937117!10781-110G7;0.741818!10181-103D1;0.917551!10159-103A6;0.825332!10056-101H2;0.756242!10737-110B8;0.994352!10025-101D7;0.659803!10044-101F8;0.630796!10424-106D1;0.698661!10463-106H4;0.993593!10616-108G4;0.875328!10486-107A9;0.868086!10062-101H8;0.844056!10202-103F4;0.768461!10158-103A5;0.358392!10441-106E9;0.672777!10031-101E4;0.693684!10063-101H9;0.93157!10063-101H9;0.930588!11763-123H8;0.888999!11765-123I1;0.955562!11768-123I4;0.421461!10807-111A6;0.565308!10790-110H7;0.655772!10798-110I6;0.817724!10786-110H3;0.492376!10591-108D6;0.680253!10593-108D8;0.409095!10590-108D5;0.217066!10026-101D8;0.61754!10096-102C6;0.437017!10168-103B6;0.938625!10154-103A1;0.997643!10209-103G2;0.847317!10061-101H7;0.651906!10027-101D9;0.543601!10043-101F7;0.631095!10783-110G9;0.284333!10028-101E1;0.705506!10060-101H6;0.510149!10203-103F5;0.973663!10059-101H5;0.834772!10047-101G2;0.577951!10029-101E2;0.315292!10058-101H4;0.107631!10418-106C4;0.290685!10492-107B6;0.713006!10694-109G1;0.266919!10797-110I5;0.76645!10057-101H3;0.542639!10100-102D1;0.783538!10055-101H1;0.63919!10204-103F6;0.775288!10191-103E2;0.423777!10563-108A5;0.245358
|name=motif_CTNGAT
|name=motif_CTNGAT
|tomtom_result=RORA_1#MA0071.1;4;0.00291349;1.38682;1;6;CTAGAT;TGACCTTGAT;-!ABF2#MA0266.1;1;0.013887;6.61023;1;6;CTAGAT;TCTAGAG;-!GAT3#MA0301.1;1;0.0146609;6.97861;1;6;CTAGAT;TGTAGATCT;-
}}
}}

Latest revision as of 12:40, 7 September 2012

Full Name: motif_CTNGAT

Motif matrix
POACGT
01049600
02000496
03124124124124
04004960
05496000
06000496

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RORA_1#MA0071.140.002913491.3868216CTAGATTGACCTTGAT-
ABF2#MA0266.110.0138876.6102316CTAGATTCTAGAG-
GAT3#MA0301.110.01466096.9786116CTAGATTGTAGATCT-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:Motif_CTNGAT&oldid=2133729"