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MacroAPE 1083:4-TAAAAAGACAGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;182.096;195.274;115.008;705.622!2;862.56;62.296;152.146;120.998!3;928.45;89.85;131.78;47.92!4;1011.112;65.89;87.454;33.544!5;924.856;130.582...")
 
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!11757-123H2;0.516792!11759-123H4;0.265691!11761-123H6;0.0700701!11842-124H6;0.315732!11837-124H1;0.0910384!10568-108B1;0.361642!13230-141I8;0.0437181!13231-141I9;0.0836617!10696-109G3;0.07663!10493-107B7;0.0862118!10494-107B8;0.00374445!10850-111F4;0.0199904!10851-111F5;0.101839!10852-111F6;0.409182!10853-111F7;0.513211!10854-111F8;0.107805!10855-111F9;0.627963!10856-111G1;0.250823!10847-111F1;0.599844!10846-111E9;0.872009!10848-111F2;0.186949!10845-111E8;0.889641!10857-111G2;0.00791623!10858-111G3;0.0438663!10156-103A3;0.722026!11901-125F2;0.0112172!11902-125F3;0.50226!11903-125F4;0.176162!10689-109F5;0.299204!10648-109A9;0.439854!10784-110H1;0.5358!10744-110C6;0.271872!10772-110F7;0.883173!10474-106I6;0.0870564!10600-108E6;0.147455!10684-109E9;0.819996!12226-129F3;0.834655!12227-129F4;0.0821822!10508-107D4;0.833236!10539-107G8;0.818435!10607-108F4;0.915465!10555-107I6;0.411967!10774-110F9;0.771664!10637-108I7;0.162754!10663-109C6;0.512485!10728-110A8;0.78845!10729-110A9;0.102066!10430-106D7;0.093688!10730-110B1;0.52294!10813-111B3;0.461098!10812-111B2;0.270391!10037-101F1;0.914871!10172-103C1;0.0126418!10163-103B1;0.0650758!10076-102A4;0.00754184!10073-102A1;0.0392025!10036-101E9;0.22697!10195-103E6;0.0142452!10277-104E7;0.00994933!10434-106E2;0.188159!10550-107I1;0.0674811!10545-107H5;0.0649204!10544-107H4;0.0250112!10704-109H2;0.0285885!10510-107D6;0.0738602!10558-107I9;0.82498!10020-101D2;0.313094!10732-110B3;0.00415632!10049-101G4;0.789684!10698-109G5;0.838104!10437-106E5;0.0148549!10417-106C3;0.272724!10035-101E8;0.430309!10171-103B9;0.0125146!10157-103A4;0.0282144!10034-101E7;0.01564!10072-101I9;0.0123319!10199-103F1;0.225081!10200-103F2;0.539103!10697-109G4;0.00275127!10723-110A3;0.793353!10179-103C8;0.0768202!10160-103A7;0.187534!10180-103C9;0.0277393!10162-103A9;0.0630234!10021-101D3;0.0148462!10840-111E3;0.801186!10706-109H4;0.883783!10033-101E6;0.966791!10032-101E5;0.0294934!10490-107B4;0.0140357!10439-106E7;0.0229106!10022-101D4;0.502685!10176-103C5;0.00245012!10469-106I1;0.0965505!10067-101I4;0.0272631!10411-106B6;0.0198854!10471-106I3;0.98855!10030-101E3;0.234191!10475-106I7;0.00653582!10787-110H4;0.16943!10477-106I9;0.357496!10695-109G2;0.461739!11771-123I7;0.616721!11772-123I8;0.458305!11773-123I9;0.613524!10093-102C3;0.636404!10442-106F1;0.0858135!10442-106F1;0.502412!10201-103F3;0.624689!10639-108I9;0.277942!11843-124H7;0.187071!11841-124H5;0.182073!10693-109F9;0.503739!10436-106E4;0.0250983!10483-107A6;0.985666!10282-104F3;0.292485!10023-101D5;0.0237439!10066-101I3;0.010329!10065-101I2;0.0131593!10800-110I8;0.00199643!10610-108F7;0.45709!10841-111E4;0.731845!10541-107H1;0.187079!10842-111E5;0.349912!10562-108A4;0.591301!10024-101D6;0.372559!10064-101I1;0.359888!10609-108F6;0.15804!10048-101G3;0.395875!10781-110G7;0.00108685!10181-103D1;0.265145!10159-103A6;0.049823!10056-101H2;0.00384854!10737-110B8;0.0367979!10025-101D7;0.114771!10044-101F8;0.343767!10424-106D1;0.063266!10463-106H4;0.577171!10616-108G4;0.0168105!10486-107A9;0.786309!10062-101H8;0.190291!10202-103F4;0.167806!10158-103A5;0.0338168!10441-106E9;0.00468443!10031-101E4;0.638461!10063-101H9;0.00774677!10063-101H9;0.165031!11763-123H8;0.00303182!11765-123I1;0.494422!11768-123I4;0.197716!10807-111A6;0.228731!10790-110H7;0.0921697!10798-110I6;0.165839!10786-110H3;0.977139!10591-108D6;0.175799!10593-108D8;0.146819!10590-108D5;0.307664!10026-101D8;0.0246979!10096-102C6;0.125332!10168-103B6;0.610974!10154-103A1;0.0174571!10209-103G2;0.00471476!10061-101H7;0.012521!10027-101D9;0.00214233!10043-101F7;0.742506!10783-110G9;0.267512!10028-101E1;0.853061!10060-101H6;0.124275!10203-103F5;0.0152587!10059-101H5;0.0148633!10047-101G2;0.00282965!10029-101E2;0.0857337!10058-101H4;0.121379!10418-106C4;0.00842083!10492-107B6;0.422498!10694-109G1;0.93238!10797-110I5;0.981591!10057-101H3;0.937891!10100-102D1;0.00132472!10055-101H1;0.000990015!10204-103F6;0.0268619!10191-103E2;0.205418!10563-108A5;0.00165784
|name=4-TAAAAAGACAGC,BestGuess:MA0277.1_AZF1(0.739253201245228),T:1198.0(22.14%),B:6407.5(14.90%),P:1e-39
|name=4-TAAAAAGACAGC,BestGuess:MA0277.1_AZF1(0.739253201245228),T:1198.0(22.14%),B:6407.5(14.90%),P:1e-39
|tomtom_result=AZF1#MA0277.1;-1;0.00020665;0.0983654;0.196731;9;TAAAAAGACAGC;AAAAAGAAA;+!TBP#MA0108.2;3;0.00151799;0.722563;0.481709;12;TAAAAAGACAGC;GTATAAAAGGCGGGG;+!TBP#MA0108.2;3;0.00151799;0.722563;0.481709;12;TAAAAAGACAGC;GTATAAAAGGCGGGG;+!Klf4#MA0039.1;-2;0.0084877;4.04015;1;10;TAAAAAGACAGC;TAAAGGAAGG;+!tll#MA0459.1;-2;0.00880061;4.18909;1;10;TAAAAAGACAGC;AAAAGTCAAA;+!FOXI1#MA0042.1;-1;0.00931443;4.43367;1;11;TAAAAAGACAGC;AAACAAACATCC;-!RUNX1#MA0002.2;-2;0.0139465;6.63855;1;10;TAAAAAGACAGC;AAACCACAGAC;-!squamosa#MA0082.1;3;0.0197538;9.40282;1;11;TAAAAAGACAGC;CCAAAAATGGAAAT;+
}}
}}

Latest revision as of 12:55, 7 September 2012

Full Name: 4-TAAAAAGACAGC,BestGuess:MA0277.1_AZF1(0.739253201245228),T:1198.0(22.14%),B:6407.5(14.90%),P:1e-39

Motif matrix
POACGT
1182.096195.274115.008705.622
2862.5662.296152.146120.998
3928.4589.85131.7847.92
41011.11265.8987.45433.544
5924.856130.582111.41431.148
6950.0141.198142.562104.226
7234.808196.472593.01173.71
8950.01482.662107.8257.504
9251.58806.254106.62233.544
101166.8521.1981.19828.752
11180.89819.168924.85673.078
12144.958797.868178.50276.672

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
AZF1#MA0277.1-10.000206650.09836540.1967319TAAAAAGACAGCAAAAAGAAA+
TBP#MA0108.230.001517990.7225630.48170912TAAAAAGACAGCGTATAAAAGGCGGGG+
TBP#MA0108.230.001517990.7225630.48170912TAAAAAGACAGCGTATAAAAGGCGGGG+
Klf4#MA0039.1-20.00848774.04015110TAAAAAGACAGCTAAAGGAAGG+
tll#MA0459.1-20.008800614.18909110TAAAAAGACAGCAAAAGTCAAA+
FOXI1#MA0042.1-10.009314434.43367111TAAAAAGACAGCAAACAAACATCC-
RUNX1#MA0002.2-20.01394656.63855110TAAAAAGACAGCAAACCACAGAC-
squamosa#MA0082.130.01975389.40282111TAAAAAGACAGCCCAAAAATGGAAAT+
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