MacroAPE 1083:Motif ANAGCT: Difference between revisions
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(Created page with "{{Macroape_1083
|PWM=PO;A;C;G;T!01;117824;0;0;0!02;29456;29456;29456;29456!03;117824;0;0;0!04;0;0;117824;0!05;0;117824;0;0!06;0;0;0;117824
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.934935!11835-124G8;0.626872!11762-123H7;0.561282!11838-124H2;0.720385!11757-123H2;0.727556!11759-123H4;0.619233!11761-123H6;0.805743!11842-124H6;0.904966!11837-124H1;0.58804!10568-108B1;0.844101!13230-141I8;0.416559!13231-141I9;0.271511!10696-109G3;0.310418!10493-107B7;0.323465!10494-107B8;0.0417635!10850-111F4;0.183891!10851-111F5;0.0714835!10852-111F6;0.0432379!10853-111F7;0.319892!10854-111F8;0.00133304!10855-111F9;0.0476831!10856-111G1;0.111094!10847-111F1;0.0847488!10846-111E9;0.0120331!10848-111F2;0.0109999!10845-111E8;0.0178926!10857-111G2;0.0828319!10858-111G3;0.110516!10156-103A3;0.126098!11901-125F2;0.000112411!11902-125F3;0.614918!11903-125F4;0.794439!10689-109F5;0.957382!10648-109A9;0.0288847!10784-110H1;0.0820147!10744-110C6;8.58985e-07!10772-110F7;0.452646!10474-106I6;0.0553996!10600-108E6;0.253373!10684-109E9;0.150149!12226-129F3;0.0288175!12227-129F4;0.0303738!10508-107D4;0.927229!10539-107G8;0.499886!10607-108F4;0.601947!10555-107I6;0.652709!10774-110F9;0.523706!10637-108I7;0.400255!10663-109C6;0.640758!10728-110A8;0.797837!10729-110A9;0.546989!10430-106D7;0.813182!10730-110B1;0.466566!10813-111B3;0.494258!10812-111B2;0.952676!10037-101F1;0.601193!10172-103C1;6.49035e-05!10163-103B1;0.000125879!10076-102A4;0.000146881!10073-102A1;9.15737e-05!10036-101E9;0.0418028!10195-103E6;0.000142789!10277-104E7;4.32488e-05!10434-106E2;2.62608e-05!10550-107I1;0.0179107!10545-107H5;0.0269734!10544-107H4;0.0688955!10704-109H2;0.0380307!10510-107D6;0.497789!10558-107I9;0.0359178!10020-101D2;0.804814!10732-110B3;0.0255149!10049-101G4;0.675661!10698-109G5;0.654602!10437-106E5;0.15356!10417-106C3;0.00186879!10035-101E8;0.00204967!10171-103B9;9.9979e-05!10157-103A4;0.000383248!10034-101E7;0.000119203!10072-101I9;0.000118255!10199-103F1;0.0414182!10200-103F2;0.0756846!10697-109G4;0.0178843!10723-110A3;0.838165!10179-103C8;0.0439196!10160-103A7;0.00289662!10180-103C9;0.000473539!10162-103A9;0.000433898!10021-101D3;8.71331e-05!10840-111E3;0.328781!10706-109H4;0.0887909!10033-101E6;0.389245!10032-101E5;6.97051e-05!10490-107B4;0.000141726!10439-106E7;0.00155285!10022-101D4;0.00858065!10176-103C5;0.0226978!10469-106I1;5.98814e-05!10067-101I4;0.00965353!10411-106B6;0.185083!10471-106I3;0.30126!10030-101E3;0.132449!10475-106I7;0.0010265!10787-110H4;0.549672!10477-106I9;0.0471093!10695-109G2;0.391545!11771-123I7;0.254468!11772-123I8;0.400799!11773-123I9;0.914234!10093-102C3;0.369517!10442-106F1;0.0539468!10442-106F1;0.0818545!10201-103F3;0.122234!10639-108I9;0.0920477!11843-124H7;0.0453868!11841-124H5;0.00135321!10693-109F9;0.00277628!10436-106E4;0.0072226!10483-107A6;3.85559e-05!10282-104F3;0.00205178!10023-101D5;0.0210004!10066-101I3;0.019787!10065-101I2;0.00200389!10800-110I8;0.00282781!10610-108F7;0.244348!10841-111E4;0.580028!10541-107H1;0.362675!10842-111E5;0.108588!10562-108A4;0.668553!10024-101D6;0.630383!10064-101I1;0.258561!10609-108F6;0.22804!10048-101G3;0.301557!10781-110G7;0.0146445!10181-103D1;0.721525!10159-103A6;0.000686471!10056-101H2;0.000968369!10737-110B8;0.000553977!10025-101D7;0.738882!10044-101F8;0.174413!10424-106D1;0.123969!10463-106H4;0.0859453!10616-108G4;0.00596476!10486-107A9;0.0814339!10062-101H8;0.0209906!10202-103F4;0.442535!10158-103A5;0.0170685!10441-106E9;0.000462446!10031-101E4;0.17792!10063-101H9;0.00019221!10063-101H9;0.0500833!11763-123H8;0.0411262!11765-123I1;0.671442!11768-123I4;0.280397!10807-111A6;0.560901!10790-110H7;0.162621!10798-110I6;0.449325!10786-110H3;0.219421!10591-108D6;0.006284!10593-108D8;0.0117972!10590-108D5;0.0157119!10026-101D8;0.023094!10096-102C6;0.139401!10168-103B6;0.588708!10154-103A1;6.19294e-05!10209-103G2;4.57584e-05!10061-101H7;0.0240745!10027-101D9;0.00172136!10043-101F7;0.559364!10783-110G9;0.0801612!10028-101E1;0.0608091!10060-101H6;0.034517!10203-103F5;0.0137795!10059-101H5;0.0502172!10047-101G2;0.013659!10029-101E2;0.128382!10058-101H4;0.155439!10418-106C4;0.00912526!10492-107B6;0.00011858!10694-109G1;0.0347101!10797-110I5;0.867107!10057-101H3;0.0300537!10100-102D1;0.00735327!10055-101H1;0.00338559!10204-103F6;0.0569981!10191-103E2;0.126178!10563-108A5;0.0254348 | ||
|name=motif_ANAGCT | |name=motif_ANAGCT | ||
|tomtom_result=Dof2#MA0020.1;0;0.00547324;2.60526;1;6;AAAGCT;AAAGCA;+!MNB1A#MA0053.1;0;0.00916154;4.36089;1;5;AAAGCT;AAAGC;+!PBF#MA0064.1;0;0.0104636;4.98068;1;5;AAAGCT;AAAGC;+!Nr2e3#MA0164.1;0;0.0165674;7.88607;1;6;AAAGCT;CAAGCTT;+!MET4#MA0335.1;2;0.0186334;8.86952;1;6;AAAGCT;CCACAGTT;-!TOD6#MA0350.1;4;0.0198583;9.45254;1;6;AAAGCT;AGGCACAGCTCATCGCGTTTT;+ | |||
}} | }} |
Latest revision as of 13:03, 7 September 2012
Full Name: motif_ANAGCT
Motif matrix | |||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
---|---|---|---|---|---|---|---|---|
Dof2#MA0020.1 | 0 | 0.00547324 | 2.60526 | 1 | 6 | AAAGCT | AAAGCA | + |
MNB1A#MA0053.1 | 0 | 0.00916154 | 4.36089 | 1 | 5 | AAAGCT | AAAGC | + |
PBF#MA0064.1 | 0 | 0.0104636 | 4.98068 | 1 | 5 | AAAGCT | AAAGC | + |
Nr2e3#MA0164.1 | 0 | 0.0165674 | 7.88607 | 1 | 6 | AAAGCT | CAAGCTT | + |
MET4#MA0335.1 | 2 | 0.0186334 | 8.86952 | 1 | 6 | AAAGCT | CCACAGTT | - |
TOD6#MA0350.1 | 4 | 0.0198583 | 9.45254 | 1 | 6 | AAAGCT | AGGCACAGCTCATCGCGTTTT | + |