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MacroAPE 1083:GGGTTGCGTCA,motif101: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;209.496;211.99;1927.862;144.652!2;99.76;202.014;2107.43;84.796!3;239.424;314.244;1646.04;294.292!4;72.326;246.906;202.014;1972.754!5;39.904;...")
 
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184-129A6;0.0842406!10809-111A8;0.0451478!10597-108E3;0.249264!10717-109I6;0.434221!10455-106G5;0.218276!10534-107G3;0.211035!10429-106D6;0.20796!10464-106H5;0.487928!10827-111C8;0.175108!10789-110H6;0.0780045!10828-111C9;0.0932345!10788-110H5;0.830294!10792-110H9;0.057669!10765-110E9;0.040267!10829-111D1;0.0303226!10830-111D2;0.0904331!10831-111D3;0.0129281!10832-111D4;0.0409715!10833-111D5;0.141757!10764-110E8;0.0982403!10770-110F5;0.458689!10399-106A3;0.280507!10400-106A4;0.128296!10405-106A9;0.146568!10834-111D6;0.2191!10835-111D7;0.0263393!10836-111D8;0.135233!10837-111D9;0.420594!10699-109G6;0.0220119!10802-111A1;0.142648!10796-110I4;0.0887395!10010-101C1;0.613035!10810-111A9;0.652051!10421-106C7;0.0222405!10708-109H6;0.94486!12235-129G3;0.525174!12236-129G4;0.0678733!12237-129G5;0.47469!10167-103B5;0.370756!10151-102I7;0.818407!10428-106D5;0.785447!10795-110I3;0.244844!10805-111A4;0.370359!10052-101G7;0.163644!10189-103D9;0.622367!10589-108D4;0.987446!10425-106D2;0.245594!10427-106D4;0.395051!10702-109G9;0.500281!10432-106D9;0.429575!10496-107C1;0.764432!10718-109I7;0.115711!10011-101C2;0.30379!10053-101G8;0.489521!10686-109F2;0.000649963!10084-102B3;0.96355!10012-101C3;0.772407!10085-102B4;0.974373!10482-107A5;0.608128!10419-106C5;0.462377!10080-102A8;0.112312!10760-110E4;0.614319!10709-109H7;0.225618!10710-109H8;0.374469!10703-109H1;0.127342!10719-109I8;0.556817!10642-109A3;0.751745!10177-103C6;0.782871!10164-103B2;0.916214!10173-103C2;0.801075!10166-103B4;0.618778!10083-102B2;0.66684!10188-103D8;0.578515!10552-107I3;0.974781!10553-107I4;0.702286!10013-101C4;0.93954!10536-107G5;0.995187!10618-108G6;0.11445!10423-106C9;0.81819!10785-110H2;0.894045!12238-129G6;0.959604!12239-129G7;0.115851!12240-129G8;0.513467!10416-106C2;0.161651!10801-110I9;0.0687188!10766-110F1;0.0111071!10824-111C5;0.0091621!10825-111C6;0.431231!10826-111C7;0.449991!10454-106G4;0.455596!10409-106B4;0.230776!10638-108I8;0.016222!10636-108I6;0.172893!10513-107D9;0.865215!10420-106C6;0.724539!10082-102B1;0.520541!10014-101C5;0.0943219!10070-101I7;0.369696!10452-106G2;0.951406!10453-106G3;0.000960499!10449-106F8;0.398282!10042-101F6;0.749987!10069-101I6;0.742907!10193-103E4;0.57485!10631-108I1;0.800355!10438-106E6;0.285789!10488-107B2;0.715829!10196-103E7;0.757512!10071-101I8;0.800518!10071-101I8;0.744969!10041-101F5;0.670666!10451-106G1;0.794179!10450-106F9;0.278323!10604-108F1;0.16722!10605-108F2;0.956635!10606-108F3;0.497039!10603-108E9;0.352069!10497-107C2;0.739731!10448-106F7;0.760854!10643-109A4;0.951409!10426-106D3;0.00637377!10431-106D8;0.8426!10197-103E8;0.190255!10443-106F2;0.988357!10815-111B5;0.278355!10816-111B6;0.328637!10817-111B7;0.646852!10015-101C6;0.319217!10410-106B5;0.919821!10054-101G9;0.92297!10758-110E2;0.760645!10711-109H9;0.732415!10040-101F4;0.133113!10470-106I2;0.815173!10415-106C1;0.224436!10198-103E9;0.681706!10614-108G2;0.759108!10612-108F9;0.955148!10549-107H9;0.393909!10615-108G3;0.139026!10487-107B1;0.962098!10433-106E1;0.048739!10688-109F4;0.672829!10444-106F3;0.680898!10444-106F3;0.184054!10485-107A8;0.257429!10413-106B8;0.240921!10175-103C4;0.149341!10161-103A8;0.938805!12131-128D7;0.634672!10624-108H3;0.508327!10712-109I1;0.344795!10205-103F7;0.66963!10206-103F8;0.278552!10207-103F9;0.96134!10050-101G5;0.0549563!10051-101G6;0.694162!10016-101C7;0.923767!10046-101G1;0.780741!10778-110G4;0.638795!10633-108I3;0.108823!10818-111B8;0.737896!10819-111B9;0.618832!10820-111C1;0.542612!10484-107A7;0.578519!10808-111A7;0.433815!10169-103B7;0.217733!10153-102I9;0.689573!13425-144D5;0.675204!13433-144E4;0.336174!13437-144E8;0.409528!11904-125F5;0.295602!11905-125F6;0.0072511!10039-101F3;7.57486e-06!10791-110H8;0.869363!10017-101C8;0.0763125!10045-101F9;0.195251!10509-107D5;0.524388!10839-111E2;0.999906!10692-109F8;0.768882!10079-102A7;0.818537!10078-102A6;0.746668!10721-110A1;0.815849!10569-108B2;0.362577!10570-108B3;0.12282!10571-108B4;0.48959!10647-109A8;0.425909!10752-110D5;0.140914!10782-110G8;0.13651!10726-110A6;0.839456!10018-101C9;0.0833699!10086-102B5;0.658098!10182-103D2;0.436451!10165-103B3;0.762984!10499-107C4;0.990846!10408-106B3;0.102869!10019-101D1;0.27374!10068-101I5;0.348674!10075-102A3;0.323287!10077-102A5;0.527555!10727-110A7;0.837726!10775-110G1;0.526975!10412-106B7;0.176161!12231-129F8;0.751343!12232-129F9;0.191878!12233-129G1;0.188043!12234-129G2;0.142352!10414-106B9;0.196251!10170-103B8;0.823973!10183-103D3;0.935983!10150-102I6;0.999904!10174-103C3;0.84192!10155-103A2;0.925384!10038-101F2;0.814473!10838-111E1;0.959168!10759-110E3;0.444062!10514-107E1;0.152657!10465-106H6;0.445965!10691-109F7;0.743179!10843-111E6;0.747673!10844-111E7;0.34678!11747-123G1;0.25557!11748-123G2;0.607752!11749-123G3;0.0382541!11750-123G4;0.613172!11751-123G5;0.929809!11840-124H4;0.460671!11752-123G6;0.758519!11753-123G7;0.188963!11754-123G8;0.345202!11755-123G9;0.342442!11756-123H1;0.744091!11833-124G6;0.0353518!11760-123H5;0.143753!11836-124G9;0.069499!11758-123H3;0.192161!11835-124G8;0.28983!11762-123H7;0.0194308!11838-124H2;0.249744!11757-123H2;0.91505!11759-123H4;0.235083!11761-123H6;0.00119162!11842-124H6;0.043816!11837-124H1;0.0213994!10568-108B1;0.0521607!13230-141I8;0.201981!13231-141I9;0.482883!10696-109G3;0.757236!10493-107B7;0.477947!10494-107B8;0.780769!10850-111F4;0.699945!10851-111F5;0.517241!10852-111F6;0.346588!10853-111F7;0.00257037!10854-111F8;0.893093!10855-111F9;0.0487842!10856-111G1;0.246729!10847-111F1;0.0233956!10846-111E9;0.0195994!10848-111F2;0.120164!10845-111E8;0.244097!10857-111G2;0.662014!10858-111G3;0.0298255!10156-103A3;0.0848578!11901-125F2;0.844461!11902-125F3;0.149165!11903-125F4;0.0185224!10689-109F5;0.152518!10648-109A9;0.826886!10784-110H1;0.68066!10744-110C6;0.621038!10772-110F7;0.945441!10474-106I6;0.0614665!10600-108E6;0.522974!10684-109E9;0.46238!12226-129F3;0.747716!12227-129F4;0.196078!10508-107D4;0.142267!10539-107G8;0.741631!10607-108F4;0.540379!10555-107I6;0.67022!10774-110F9;0.707617!10637-108I7;0.0118663!10663-109C6;0.793223!10728-110A8;0.460541!10729-110A9;0.651585!10430-106D7;0.20318!10730-110B1;0.859624!10813-111B3;0.881806!10812-111B2;0.14383!10037-101F1;0.619671!10172-103C1;0.871984!10163-103B1;0.979732!10076-102A4;0.855554!10073-102A1;0.951749!10036-101E9;0.71246!10195-103E6;0.792601!10277-104E7;0.756009!10434-106E2;0.87945!10550-107I1;0.632431!10545-107H5;0.186325!10544-107H4;0.397965!10704-109H2;0.735995!10510-107D6;0.391309!10558-107I9;0.616153!10020-101D2;0.0408417!10732-110B3;0.881073!10049-101G4;0.616879!10698-109G5;0.325648!10437-106E5;0.772668!10417-106C3;0.459976!10035-101E8;0.212662!10171-103B9;0.878139!10157-103A4;0.851288!10034-101E7;0.918875!10072-101I9;0.88379!10199-103F1;0.746386!10200-103F2;0.42059!10697-109G4;0.916973!10723-110A3;0.201414!10179-103C8;0.258689!10160-103A7;0.339503!10180-103C9;0.857741!10162-103A9;0.124835!10021-101D3;0.448264!10840-111E3;0.153054!10706-109H4;0.891582!10033-101E6;0.0795985!10032-101E5;0.856851!10490-107B4;0.802289!10439-106E7;0.255231!10022-101D4;0.21854!10176-103C5;0.679965!10469-106I1;0.952182!10067-101I4;0.15941!10411-106B6;0.450897!10471-106I3;0.584669!10030-101E3;0.938192!10475-106I7;0.67725!10787-110H4;0.308815!10477-106I9;0.504822!10695-109G2;0.789882!11771-123I7;0.80936!11772-123I8;0.910843!11773-123I9;0.880946!10093-102C3;0.445425!10442-106F1;0.114572!10442-106F1;0.479199!10201-103F3;0.518474!10639-108I9;0.374679!11843-124H7;0.834289!11841-124H5;0.142386!10693-109F9;0.990917!10436-106E4;0.559017!10483-107A6;0.41299!10282-104F3;0.928689!10023-101D5;0.700474!10066-101I3;0.718297!10065-101I2;0.561376!10800-110I8;0.615184!10610-108F7;0.246115!10841-111E4;0.718446!10541-107H1;0.132997!10842-111E5;0.612911!10562-108A4;0.569568!10024-101D6;0.699147!10064-101I1;0.556278!10609-108F6;0.144791!10048-101G3;0.833685!10781-110G7;0.840456!10181-103D1;0.231141!10159-103A6;0.861217!10056-101H2;0.907461!10737-110B8;0.683515!10025-101D7;0.506198!10044-101F8;0.476977!10424-106D1;0.87572!10463-106H4;0.300122!10616-108G4;0.88003!10486-107A9;0.424077!10062-101H8;0.915526!10202-103F4;0.448852!10158-103A5;0.369666!10441-106E9;0.697065!10031-101E4;0.0182748!10063-101H9;0.784806!10063-101H9;0.582877!11763-123H8;0.862338!11765-123I1;0.0301348!11768-123I4;0.0227769!10807-111A6;0.0147113!10790-110H7;0.503429!10798-110I6;0.152599!10786-110H3;0.731804!10591-108D6;0.469373!10593-108D8;0.506023!10590-108D5;0.61433!10026-101D8;0.158916!10096-102C6;0.713062!10168-103B6;0.0499814!10154-103A1;0.97896!10209-103G2;0.748788!10061-101H7;0.885073!10027-101D9;0.545539!10043-101F7;0.271873!10783-110G9;0.859405!10028-101E1;0.516417!10060-101H6;0.576016!10203-103F5;0.736961!10059-101H5;0.840107!10047-101G2;0.92129!10029-101E2;0.601024!10058-101H4;0.976021!10418-106C4;0.786283!10492-107B6;0.770118!10694-109G1;0.206044!10797-110I5;0.891956!10057-101H3;0.185932!10100-102D1;0.592828!10055-101H1;0.863215!10204-103F6;0.515104!10191-103E2;0.473434!10563-108A5;0.876307
|name=GGGTTGCGTCA,motif101,CNhs13473,T:2494.0(41.24%),B:25191.5(31.65%),P:1e-54
|name=GGGTTGCGTCA,motif101,CNhs13473,T:2494.0(41.24%),B:25191.5(31.65%),P:1e-54
|tomtom_result=FHL1#MA0295.1;-2;0.000159952;0.0761373;0.151111;8;GGGTTGCGTCA;TTTGCGTC;-!Cebpa#MA0102.1;1;0.000997785;0.474945;0.352332;11;GGGTTGCGTCA;GAGATTGCGAAA;-!AP1#MA0099.2;-4;0.00161513;0.768803;0.352332;7;GGGTTGCGTCA;TGAGTCA;-!ARG80#MA0271.1;-5;0.00204647;0.974119;0.352332;6;GGGTTGCGTCA;GCGTCT;-!CREB1#MA0018.2;-3;0.00214744;1.02218;0.352332;8;GGGTTGCGTCA;TGACGTCA;-!CEBPA#MA0102.2;-2;0.00245288;1.16757;0.352332;9;GGGTTGCGTCA;ATTGCGAAA;-!CIN5#MA0284.1;-1;0.00284204;1.35281;0.352332;10;GGGTTGCGTCA;GATTACGTAA;-!BRCA1#MA0133.1;0;0.0033031;1.57227;0.352332;7;GGGTTGCGTCA;GTGTTGT;-!TGA1A#MA0129.1;-4;0.00403898;1.92256;0.352332;7;GGGTTGCGTCA;TACGTCA;+!RPN4#MA0373.1;-1;0.00424246;2.01941;0.352332;7;GGGTTGCGTCA;GGTGGCG;+!CUP9#MA0288.1;-2;0.00428629;2.04027;0.352332;9;GGGTTGCGTCA;AATGTGTCA;-!HLF#MA0043.1;-1;0.00447537;2.13028;0.352332;10;GGGTTGCGTCA;GGTTACGCAATT;+!CST6#MA0286.1;-3;0.00540189;2.5713;0.364521;8;GGGTTGCGTCA;TTACGTCAT;-!Ddit3::Cebpa#MA0019.1;1;0.0058484;2.78384;0.368341;11;GGGTTGCGTCA;GGGATTGCATCT;-!GCN4#MA0303.1;3;0.0109614;5.21761;0.647216;11;GGGTTGCGTCA;CAAGGGATGAGTCATACTTCA;+!AFT2#MA0270.1;0;0.0119997;5.71185;0.666847;8;GGGTTGCGTCA;GGGGTGTG;-!NFIL3#MA0025.1;0;0.0148742;7.0801;0.699865;11;GGGTTGCGTCA;ATGTTACATAA;-!SNT2#MA0384.1;0;0.0153355;7.2997;0.699865;11;GGGTTGCGTCA;TGGTAGCGCCG;+!gt#MA0447.1;-2;0.0162544;7.73712;0.699865;9;GGGTTGCGTCA;ATTACGTAAT;+!NFE2L2#MA0150.1;-1;0.0162979;7.75781;0.699865;10;GGGTTGCGTCA;TGCTGAGTCAT;-!CREB1#MA0018.2;2;0.0175208;8.3399;0.719666;10;GGGTTGCGTCA;CCTGGTGACGTC;+!Spz1#MA0111.1;1;0.0201235;9.5788;0.792132;10;GGGTTGCGTCA;AGGGTAACAGC;+
}}
}}

Latest revision as of 13:17, 7 September 2012

Full Name: GGGTTGCGTCA,motif101,CNhs13473,T:2494.0(41.24%),B:25191.5(31.65%),P:1e-54

Motif matrix
POACGT
1209.496211.991927.862144.652
299.76202.0142107.4384.796
3239.424314.2441646.04294.292
472.326246.906202.0141972.754
539.90412.47202.0142239.612
6122.206154.6282147.33469.832
7231.9421985.22479.808197.026
8127.194184.5562035.104147.146
9209.496142.158157.1221985.224
102.4942274.528214.4842.494
112132.37107.24267.338187.05

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
FHL1#MA0295.1-20.0001599520.07613730.1511118GGGTTGCGTCATTTGCGTC-
Cebpa#MA0102.110.0009977850.4749450.35233211GGGTTGCGTCAGAGATTGCGAAA-
AP1#MA0099.2-40.001615130.7688030.3523327GGGTTGCGTCATGAGTCA-
ARG80#MA0271.1-50.002046470.9741190.3523326GGGTTGCGTCAGCGTCT-
CREB1#MA0018.2-30.002147441.022180.3523328GGGTTGCGTCATGACGTCA-
CEBPA#MA0102.2-20.002452881.167570.3523329GGGTTGCGTCAATTGCGAAA-
CIN5#MA0284.1-10.002842041.352810.35233210GGGTTGCGTCAGATTACGTAA-
BRCA1#MA0133.100.00330311.572270.3523327GGGTTGCGTCAGTGTTGT-
TGA1A#MA0129.1-40.004038981.922560.3523327GGGTTGCGTCATACGTCA+
RPN4#MA0373.1-10.004242462.019410.3523327GGGTTGCGTCAGGTGGCG+
CUP9#MA0288.1-20.004286292.040270.3523329GGGTTGCGTCAAATGTGTCA-
HLF#MA0043.1-10.004475372.130280.35233210GGGTTGCGTCAGGTTACGCAATT+
CST6#MA0286.1-30.005401892.57130.3645218GGGTTGCGTCATTACGTCAT-
Ddit3::Cebpa#MA0019.110.00584842.783840.36834111GGGTTGCGTCAGGGATTGCATCT-
GCN4#MA0303.130.01096145.217610.64721611GGGTTGCGTCACAAGGGATGAGTCATACTTCA+
AFT2#MA0270.100.01199975.711850.6668478GGGTTGCGTCAGGGGTGTG-
NFIL3#MA0025.100.01487427.08010.69986511GGGTTGCGTCAATGTTACATAA-
SNT2#MA0384.100.01533557.29970.69986511GGGTTGCGTCATGGTAGCGCCG+
gt#MA0447.1-20.01625447.737120.6998659GGGTTGCGTCAATTACGTAAT+
NFE2L2#MA0150.1-10.01629797.757810.69986510GGGTTGCGTCATGCTGAGTCAT-
CREB1#MA0018.220.01752088.33990.71966610GGGTTGCGTCACCTGGTGACGTC+
Spz1#MA0111.110.02012359.57880.79213210GGGTTGCGTCAAGGGTAACAGC+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:GGGTTGCGTCA,motif101&oldid=2133948"