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MacroAPE 1083:13-AATTCCG: Difference between revisions

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0257!10464-106H5;0.962905!10827-111C8;0.8303!10789-110H6;0.9874!10828-111C9;0.992856!10788-110H5;0.701433!10792-110H9;0.939552!10765-110E9;0.497108!10829-111D1;0.341552!10830-111D2;0.368108!10831-111D3;0.508428!10832-111D4;0.338849!10833-111D5;0.888241!10764-110E8;0.613577!10770-110F5;0.121648!10399-106A3;0.353325!10400-106A4;0.0345302!10405-106A9;0.0538176!10834-111D6;0.0829115!10835-111D7;0.413971!10836-111D8;0.784161!10837-111D9;0.638055!10699-109G6;0.586251!10802-111A1;0.674753!10796-110I4;0.228933!10010-101C1;0.955798!10810-111A9;0.0109457!10421-106C7;0.64012!10708-109H6;0.791237!12235-129G3;0.679273!12236-129G4;8.55203e-05!12237-129G5;0.650851!10167-103B5;0.160375!10151-102I7;0.010673!10428-106D5;0.0060236!10795-110I3;0.0642999!10805-111A4;0.540521!10052-101G7;0.752969!10189-103D9;0.11981!10589-108D4;0.862681!10425-106D2;0.814001!10427-106D4;0.502507!10702-109G9;0.103145!10432-106D9;0.755165!10496-107C1;0.00290774!10718-109I7;0.0270546!10011-101C2;0.3281!10053-101G8;0.314579!10686-109F2;0.0394367!10084-102B3;0.29498!10012-101C3;0.000478324!10085-102B4;0.00118985!10482-107A5;0.0181584!10419-106C5;0.578439!10080-102A8;0.556441!10760-110E4;0.543954!10709-109H7;0.0547695!10710-109H8;0.256529!10703-109H1;0.445634!10719-109I8;0.472585!10642-109A3;0.576232!10177-103C6;0.957395!10164-103B2;0.0133518!10173-103C2;0.00214774!10166-103B4;0.00707469!10083-102B2;0.0281277!10188-103D8;0.00631216!10552-107I3;0.000524228!10553-107I4;0.267991!10013-101C4;0.0107898!10536-107G5;0.172585!10618-108G6;0.000170039!10423-106C9;0.27993!10785-110H2;0.123938!12238-129G6;0.0887115!12239-129G7;4.33378e-06!12240-129G8;0.465055!10416-106C2;0.0235246!10801-110I9;0.3794!10766-110F1;0.732381!10824-111C5;0.787543!10825-111C6;0.600314!10826-111C7;0.635615!10454-106G4;0.646426!10409-106B4;0.2374!10638-108I8;0.656005!10636-108I6;0.00225966!10513-107D9;2.58819e-07!10420-106C6;0.0935268!10082-102B1;0.863347!10014-101C5;0.25502!10070-101I7;0.174607!10452-106G2;0.231221!10453-106G3;9.55821e-05!10449-106F8;0.00998241!10042-101F6;0.0262981!10069-101I6;0.0158248!10193-103E4;0.00056208!10631-108I1;0.00564819!10438-106E6;0.442306!10488-107B2;0.0474109!10196-103E7;0.63552!10071-101I8;0.183488!10071-101I8;0.0668705!10041-101F5;0.0112448!10451-106G1;0.0352233!10450-106F9;0.000536618!10604-108F1;0.923579!10605-108F2;0.170544!10606-108F3;0.0169833!10603-108E9;0.0859242!10497-107C2;0.123138!10448-106F7;0.0117053!10643-109A4;0.405299!10426-106D3;0.0786384!10431-106D8;0.000114284!10197-103E8;0.000120917!10443-106F2;0.00462508!10815-111B5;0.821498!10816-111B6;0.530068!10817-111B7;0.21778!10015-101C6;0.696342!10410-106B5;0.116975!10054-101G9;0.674577!10758-110E2;0.0381234!10711-109H9;0.11002!10040-101F4;0.00628898!10470-106I2;0.00122346!10415-106C1;0.101992!10198-103E9;0.000112927!10614-108G2;0.0226949!10612-108F9;0.0929629!10549-107H9;0.560532!10615-108G3;0.405974!10487-107B1;0.380881!10433-106E1;0.0012807!10688-109F4;0.0757014!10444-106F3;0.389533!10444-106F3;0.0441334!10485-107A8;0.0386454!10413-106B8;0.190851!10175-103C4;0.437404!10161-103A8;0.0153486!12131-128D7;0.0116808!10624-108H3;0.455409!10712-109I1;0.795891!10205-103F7;0.0169074!10206-103F8;0.0832324!10207-103F9;0.00356014!10050-101G5;0.55955!10051-101G6;0.0871392!10016-101C7;0.00303283!10046-101G1;0.0404412!10778-110G4;0.314726!10633-108I3;0.8647!10818-111B8;0.172445!10819-111B9;0.295464!10820-111C1;0.348402!10484-107A7;0.267964!10808-111A7;0.224001!10169-103B7;0.235975!10153-102I9;0.00652733!13425-144D5;0.00908338!13433-144E4;0.0958182!13437-144E8;0.0342807!11904-125F5;0.0780505!11905-125F6;0.00130143!10039-101F3;0.00129065!10791-110H8;0.00145898!10017-101C8;0.0398061!10045-101F9;0.0358597!10509-107D5;0.83709!10839-111E2;0.0778498!10692-109F8;0.473102!10079-102A7;0.00255233!10078-102A6;0.0122601!10721-110A1;0.00502415!10569-108B2;0.784045!10570-108B3;0.473695!10571-108B4;0.425173!10647-109A8;0.314126!10752-110D5;0.250541!10782-110G8;0.526545!10726-110A6;0.738933!10018-101C9;0.0810184!10086-102B5;0.131457!10182-103D2;0.553263!10165-103B3;0.0505196!10499-107C4;0.0432078!10408-106B3;0.168297!10019-101D1;0.417117!10068-101I5;0.495753!10075-102A3;0.704426!10077-102A5;0.0255775!10727-110A7;0.175166!10775-110G1;0.315503!10412-106B7;0.100565!12231-129F8;0.000151312!12232-129F9;0.266607!12233-129G1;0.419193!12234-129G2;0.0731411!10414-106B9;0.136635!10170-103B8;0.459864!10183-103D3;0.00201735!10150-102I6;0.00597995!10174-103C3;0.00316166!10155-103A2;0.054365!10038-101F2;0.0581245!10838-111E1;0.046377!10759-110E3;0.963871!10514-107E1;0.0135212!10465-106H6;0.370675!10691-109F7;0.765709!10843-111E6;0.050998!10844-111E7;0.698107!11747-123G1;0.989243!11748-123G2;0.243995!11749-123G3;0.197456!11750-123G4;0.369878!11751-123G5;0.606491!11840-124H4;0.888942!11752-123G6;0.338182!11753-123G7;0.000420979!11754-123G8;0.155923!11755-123G9;0.00459168!11756-123H1;0.000480747!11833-124G6;0.00808519!11760-123H5;0.000211312!11836-124G9;0.000194969!11758-123H3;0.478759!11835-124G8;0.593569!11762-123H7;0.288114!11838-124H2;0.00618206!11757-123H2;0.0325974!11759-123H4;0.00490953!11761-123H6;0.145244!11842-124H6;6.20162e-05!11837-124H1;0.213709!10568-108B1;0.236443!13230-141I8;0.54707!13231-141I9;0.74126!10696-109G3;0.777256!10493-107B7;0.593216!10494-107B8;0.0848733!10850-111F4;0.000263598!10851-111F5;0.078659!10852-111F6;0.834718!10853-111F7;0.690001!10854-111F8;0.00852454!10855-111F9;0.436833!10856-111G1;0.624328!10847-111F1;0.0113835!10846-111E9;0.591437!10848-111F2;0.00110523!10845-111E8;0.111982!10857-111G2;0.000467358!10858-111G3;0.124736!10156-103A3;0.117231!11901-125F2;0.00351671!11902-125F3;0.0336408!11903-125F4;0.131201!10689-109F5;0.123491!10648-109A9;0.148032!10784-110H1;0.0012583!10744-110C6;0.143129!10772-110F7;0.87474!10474-106I6;0.527793!10600-108E6;0.785935!10684-109E9;0.0660162!12226-129F3;0.0391816!12227-129F4;0.0327271!10508-107D4;0.837396!10539-107G8;0.992652!10607-108F4;0.949465!10555-107I6;0.646356!10774-110F9;0.600193!10637-108I7;0.0725753!10663-109C6;0.676507!10728-110A8;0.831757!10729-110A9;0.520984!10430-106D7;0.903305!10730-110B1;0.455263!10813-111B3;0.573653!10812-111B2;0.580099!10037-101F1;0.923752!10172-103C1;0.00134231!10163-103B1;0.00131992!10076-102A4;0.00521769!10073-102A1;0.000872216!10036-101E9;0.0245158!10195-103E6;0.000303711!10277-104E7;0.000738229!10434-106E2;0.0102955!10550-107I1;0.0141311!10545-107H5;0.00510048!10544-107H4;0.0054663!10704-109H2;0.0150027!10510-107D6;0.935575!10558-107I9;0.0266541!10020-101D2;0.0595323!10732-110B3;0.769955!10049-101G4;0.0467329!10698-109G5;0.00469661!10437-106E5;0.238253!10417-106C3;0.0108421!10035-101E8;0.00110228!10171-103B9;0.00151646!10157-103A4;0.00394456!10034-101E7;0.00494417!10072-101I9;0.00135887!10199-103F1;0.07103!10200-103F2;0.00303955!10697-109G4;0.00346347!10723-110A3;0.374324!10179-103C8;0.000389317!10160-103A7;0.0399161!10180-103C9;0.103767!10162-103A9;0.0066523!10021-101D3;0.0718172!10840-111E3;0.631612!10706-109H4;0.446759!10033-101E6;0.120709!10032-101E5;0.00843513!10490-107B4;0.00035368!10439-106E7;0.193429!10022-101D4;0.507026!10176-103C5;0.143927!10469-106I1;0.00299194!10067-101I4;0.101849!10411-106B6;0.138612!10471-106I3;0.000536776!10030-101E3;0.00022616!10475-106I7;0.0329627!10787-110H4;0.918441!10477-106I9;0.973913!10695-109G2;0.70111!11771-123I7;0.274243!11772-123I8;0.304971!11773-123I9;0.375862!10093-102C3;0.0866188!10442-106F1;0.0181609!10442-106F1;0.854146!10201-103F3;0.911791!10639-108I9;0.166337!11843-124H7;0.000853211!11841-124H5;0.00999416!10693-109F9;0.948258!10436-106E4;0.0761359!10483-107A6;0.141789!10282-104F3;0.0538253!10023-101D5;8.09678e-05!10066-101I3;0.00155378!10065-101I2;0.00267883!10800-110I8;0.0363581!10610-108F7;0.00174915!10841-111E4;0.990621!10541-107H1;0.632349!10842-111E5;0.428523!10562-108A4;0.712198!10024-101D6;0.526102!10064-101I1;0.333379!10609-108F6;0.0678964!10048-101G3;0.0179599!10781-110G7;0.476009!10181-103D1;0.212747!10159-103A6;0.151891!10056-101H2;0.167156!10737-110B8;0.0201934!10025-101D7;0.504403!10044-101F8;0.510593!10424-106D1;0.842511!10463-106H4;0.168947!10616-108G4;6.91741e-05!10486-107A9;1.98867e-05!10062-101H8;0.0864684!10202-103F4;0.687374!10158-103A5;0.00035243!10441-106E9;0.0829995!10031-101E4;0.924658!10063-101H9;0.000405574!10063-101H9;0.0201794!11763-123H8;0.0134868!11765-123I1;0.934658!11768-123I4;0.184567!10807-111A6;0.0909685!10790-110H7;0.2372!10798-110I6;0.336589!10786-110H3;0.630541!10591-108D6;0.254825!10593-108D8;0.0319249!10590-108D5;0.0205932!10026-101D8;0.0931602!10096-102C6;0.513127!10168-103B6;0.570058!10154-103A1;0.0319468!10209-103G2;0.0250771!10061-101H7;0.00508848!10027-101D9;0.0076073!10043-101F7;0.916769!10783-110G9;0.700277!10028-101E1;0.696083!10060-101H6;0.100941!10203-103F5;0.0765052!10059-101H5;0.00919953!10047-101G2;0.00590159!10029-101E2;0.527025!10058-101H4;0.452019!10418-106C4;0.0153984!10492-107B6;5.76546e-07!10694-109G1;0.00256667!10797-110I5;0.144145!10057-101H3;0.701998!10100-102D1;0.363535!10055-101H1;0.298561!10204-103F6;0.13627!10191-103E2;0.492335!10563-108A5;0.00555207
|name=13-AATTCCG,CNhs13473,BestGuess:TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq/Homer(0.742732423596976),T:1770.0(21.55%),B:5986.4(14.72%),P:1e-60
|name=13-AATTCCG,CNhs13473,BestGuess:TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq/Homer(0.742732423596976),T:1770.0(21.55%),B:5986.4(14.72%),P:1e-60
|tomtom_result=LYS14#MA0325.1;0;5.49096e-06;0.0026137;0.00514918;7;AATTCCG;AATTCCGG;-!RELA#MA0107.1;3;0.000846822;0.403087;0.322611;7;AATTCCG;GGAAATTCCC;-!HAL9#MA0311.1;-2;0.00103208;0.491268;0.322611;5;AATTCCG;TTCCG;-!YKL222C#MA0428.1;0;0.00169598;0.807288;0.355107;7;AATTCCG;ATTTCCGTT;-!YRM1#MA0438.1;0;0.00189339;0.901253;0.355107;7;AATTCCG;ATTTCCGT;-!YLR278C#MA0430.1;0;0.00245166;1.16699;0.383176;7;AATTCCG;AACTCCGG;-!YDR520C#MA0422.1;2;0.00300815;1.43188;0.402987;7;AATTCCG;TTATCTCCGG;-!ELK4#MA0076.1;0;0.00406091;1.93299;0.437013;7;AATTCCG;ACTTCCGGT;-!NF-kappaB#MA0061.1;3;0.00458903;2.18438;0.437013;7;AATTCCG;GGAAATTCCC;-!HAP1#MA0312.1;1;0.00524903;2.49854;0.437013;7;AATTCCG;TATCTCCG;-!STB5#MA0392.1;1;0.00524903;2.49854;0.437013;7;AATTCCG;TAACACCG;-!GABPA#MA0062.2;3;0.00565601;2.69226;0.437013;7;AATTCCG;GCCACTTCCGG;-!DAL81#MA0290.1;0;0.00605826;2.88373;0.437013;7;AATTCCG;AATCCCGCCCGCGGCTTTT;-!YRR1#MA0439.1;3;0.0074518;3.54706;0.478991;7;AATTCCG;CTTATCTCCGC;+!REL#MA0101.1;3;0.0078517;3.73741;0.478991;7;AATTCCG;GGAAATCCCC;-!YBR239C#MA0420.1;-1;0.00817255;3.89013;0.478991;6;AATTCCG;GTTCCGGT;-!ASG1#MA0275.1;-2;0.0103931;4.94712;0.541115;5;AATTCCG;TTCCGG;-!SUT2#MA0400.1;6;0.0112527;5.3563;0.541115;7;AATTCCG;ATGATAAACTCCGAAAATTT;+!STB4#MA0391.1;-2;0.0113753;5.41466;0.541115;5;AATTCCG;TTCCGAG;-!CEP3#MA0282.1;-1;0.0115407;5.49335;0.541115;6;AATTCCG;TTTCCGAG;-!Dll#MA0187.1;1;0.013972;6.65066;0.549791;6;AATTCCG;TAATTAC;+!RDR1#MA0360.1;-1;0.0149505;7.11644;0.549791;6;AATTCCG;GTTCCGCA;-!SPI1#MA0080.1;-1;0.0152767;7.27169;0.549791;6;AATTCCG;CTTCCG;-!YJL103C#MA0427.1;0;0.0162511;7.73552;0.549791;7;AATTCCG;AGCTCCGGAGA;+!Eip74EF#MA0026.1;-1;0.0171109;8.14477;0.549791;6;AATTCCG;CTTCCGG;-!CAT8#MA0280.1;-2;0.0172222;8.19778;0.549791;5;AATTCCG;TTCCGG;-!TEC1#MA0406.1;1;0.0173436;8.25554;0.549791;7;AATTCCG;ACATTCCC;+!FEV#MA0156.1;0;0.0180054;8.57058;0.549791;7;AATTCCG;ATTTCCTG;-!RGT1#MA0367.1;3;0.0182215;8.67342;0.549791;7;AATTCCG;AATTTTTCCGG;+!GSM1#MA0308.1;2;0.0186714;8.88757;0.549791;7;AATTCCG;TATACTCCGGAGTTTTTTAAT;-!GABPA#MA0062.2;1;0.0193449;9.20817;0.549791;7;AATTCCG;CTCTTCCGGT;-!ETS1#MA0098.1;-1;0.0193474;9.20934;0.549791;6;AATTCCG;CTTCCG;+!HLF#MA0043.1;0;0.0207508;9.8774;0.57233;7;AATTCCG;TATTACGTAACC;-
}}
}}

Latest revision as of 13:22, 7 September 2012

Full Name: 13-AATTCCG,CNhs13473,BestGuess:TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq/Homer(0.742732423596976),T:1770.0(21.55%),B:5986.4(14.72%),P:1e-60

Motif matrix
POACGT
11764.691.771.771.77
21764.691.771.771.77
31.771.771.771764.69
41.77194.71.771571.76
51.771359.36407.11.77
61.771764.691.771.77
71.77283.21483.261.77

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
LYS14#MA0325.105.49096e-060.00261370.005149187AATTCCGAATTCCGG-
RELA#MA0107.130.0008468220.4030870.3226117AATTCCGGGAAATTCCC-
HAL9#MA0311.1-20.001032080.4912680.3226115AATTCCGTTCCG-
YKL222C#MA0428.100.001695980.8072880.3551077AATTCCGATTTCCGTT-
YRM1#MA0438.100.001893390.9012530.3551077AATTCCGATTTCCGT-
YLR278C#MA0430.100.002451661.166990.3831767AATTCCGAACTCCGG-
YDR520C#MA0422.120.003008151.431880.4029877AATTCCGTTATCTCCGG-
ELK4#MA0076.100.004060911.932990.4370137AATTCCGACTTCCGGT-
NF-kappaB#MA0061.130.004589032.184380.4370137AATTCCGGGAAATTCCC-
HAP1#MA0312.110.005249032.498540.4370137AATTCCGTATCTCCG-
STB5#MA0392.110.005249032.498540.4370137AATTCCGTAACACCG-
GABPA#MA0062.230.005656012.692260.4370137AATTCCGGCCACTTCCGG-
DAL81#MA0290.100.006058262.883730.4370137AATTCCGAATCCCGCCCGCGGCTTTT-
YRR1#MA0439.130.00745183.547060.4789917AATTCCGCTTATCTCCGC+
REL#MA0101.130.00785173.737410.4789917AATTCCGGGAAATCCCC-
YBR239C#MA0420.1-10.008172553.890130.4789916AATTCCGGTTCCGGT-
ASG1#MA0275.1-20.01039314.947120.5411155AATTCCGTTCCGG-
SUT2#MA0400.160.01125275.35630.5411157AATTCCGATGATAAACTCCGAAAATTT+
STB4#MA0391.1-20.01137535.414660.5411155AATTCCGTTCCGAG-
CEP3#MA0282.1-10.01154075.493350.5411156AATTCCGTTTCCGAG-
Dll#MA0187.110.0139726.650660.5497916AATTCCGTAATTAC+
RDR1#MA0360.1-10.01495057.116440.5497916AATTCCGGTTCCGCA-
SPI1#MA0080.1-10.01527677.271690.5497916AATTCCGCTTCCG-
YJL103C#MA0427.100.01625117.735520.5497917AATTCCGAGCTCCGGAGA+
Eip74EF#MA0026.1-10.01711098.144770.5497916AATTCCGCTTCCGG-
CAT8#MA0280.1-20.01722228.197780.5497915AATTCCGTTCCGG-
TEC1#MA0406.110.01734368.255540.5497917AATTCCGACATTCCC+
FEV#MA0156.100.01800548.570580.5497917AATTCCGATTTCCTG-
RGT1#MA0367.130.01822158.673420.5497917AATTCCGAATTTTTCCGG+
GSM1#MA0308.120.01867148.887570.5497917AATTCCGTATACTCCGGAGTTTTTTAAT-
GABPA#MA0062.210.01934499.208170.5497917AATTCCGCTCTTCCGGT-
ETS1#MA0098.1-10.01934749.209340.5497916AATTCCGCTTCCG+
HLF#MA0043.100.02075089.87740.572337AATTCCGTATTACGTAACC-
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