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MacroAPE 1083:9-GATCCGCTA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;90.321;1.309;1153.229;64.141!2;1199.044;83.776;24.871;1.309!3;1.309;1.309;1.309;1305.073!4;206.822;1066.835;1.309;34.034!5;1.309;1305.073;1....")
 
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9-110H6;0.718958!10828-111C9;0.44603!10788-110H5;0.370025!10792-110H9;0.977602!10765-110E9;0.824794!10829-111D1;0.916196!10830-111D2;0.908057!10831-111D3;0.44629!10832-111D4;0.447017!10833-111D5;0.797025!10764-110E8;0.850571!10770-110F5;0.361255!10399-106A3;0.714233!10400-106A4;0.57545!10405-106A9;0.623256!10834-111D6;0.674841!10835-111D7;0.686224!10836-111D8;0.734643!10837-111D9;0.514885!10699-109G6;0.826791!10802-111A1;0.740784!10796-110I4;0.0680826!10010-101C1;0.376822!10810-111A9;0.915747!10421-106C7;0.319639!10708-109H6;0.501083!12235-129G3;0.865946!12236-129G4;0.334776!12237-129G5;0.982445!10167-103B5;0.604403!10151-102I7;0.779532!10428-106D5;0.788143!10795-110I3;0.880843!10805-111A4;0.63511!10052-101G7;0.459572!10189-103D9;0.530431!10589-108D4;0.786165!10425-106D2;0.743612!10427-106D4;0.687617!10702-109G9;0.213374!10432-106D9;0.142749!10496-107C1;0.424014!10718-109I7;0.243937!10011-101C2;0.956211!10053-101G8;0.609504!10686-109F2;0.967657!10084-102B3;0.767215!10012-101C3;0.857376!10085-102B4;0.797688!10482-107A5;0.471223!10419-106C5;0.183239!10080-102A8;0.123058!10760-110E4;0.523365!10709-109H7;0.856836!10710-109H8;0.305326!10703-109H1;0.0487705!10719-109I8;0.951848!10642-109A3;0.440407!10177-103C6;0.458553!10164-103B2;0.764879!10173-103C2;0.943208!10166-103B4;0.694537!10083-102B2;0.615621!10188-103D8;0.96686!10552-107I3;0.686482!10553-107I4;0.493643!10013-101C4;0.555608!10536-107G5;0.65712!10618-108G6;0.138844!10423-106C9;0.495554!10785-110H2;0.925375!12238-129G6;0.515591!12239-129G7;0.690982!12240-129G8;0.665178!10416-106C2;0.811517!10801-110I9;0.926099!10766-110F1;0.862862!10824-111C5;0.744406!10825-111C6;0.769916!10826-111C7;0.909438!10454-106G4;0.833618!10409-106B4;0.814651!10638-108I8;0.812093!10636-108I6;0.557464!10513-107D9;0.555269!10420-106C6;0.793982!10082-102B1;0.42462!10014-101C5;0.552663!10070-101I7;0.878609!10452-106G2;0.713441!10453-106G3;0.583846!10449-106F8;0.657394!10042-101F6;0.492924!10069-101I6;0.906219!10193-103E4;0.238251!10631-108I1;0.715!10438-106E6;0.847648!10488-107B2;0.540891!10196-103E7;0.664111!10071-101I8;0.600126!10071-101I8;0.637209!10041-101F5;0.775906!10451-106G1;0.655466!10450-106F9;0.423509!10604-108F1;0.373871!10605-108F2;0.23837!10606-108F3;0.500535!10603-108E9;0.326261!10497-107C2;0.479729!10448-106F7;0.195134!10643-109A4;0.865843!10426-106D3;0.797561!10431-106D8;0.567244!10197-103E8;0.702523!10443-106F2;0.386573!10815-111B5;0.881311!10816-111B6;0.95723!10817-111B7;0.960656!10015-101C6;0.861147!10410-106B5;0.589339!10054-101G9;0.301974!10758-110E2;0.601789!10711-109H9;0.956914!10040-101F4;0.565994!10470-106I2;0.854947!10415-106C1;0.955887!10198-103E9;0.962234!10614-108G2;0.824499!10612-108F9;0.61031!10549-107H9;0.239764!10615-108G3;0.846315!10487-107B1;0.628953!10433-106E1;0.778653!10688-109F4;0.78483!10444-106F3;0.99769!10444-106F3;0.561282!10485-107A8;0.724483!10413-106B8;0.668401!10175-103C4;0.711941!10161-103A8;0.771413!12131-128D7;0.759898!10624-108H3;0.11729!10712-109I1;0.816357!10205-103F7;0.516482!10206-103F8;0.150905!10207-103F9;0.259456!10050-101G5;0.951973!10051-101G6;0.300898!10016-101C7;0.164121!10046-101G1;0.342757!10778-110G4;0.258537!10633-108I3;0.0463009!10818-111B8;0.488001!10819-111B9;0.750288!10820-111C1;0.770961!10484-107A7;0.730102!10808-111A7;0.0131371!10169-103B7;0.724857!10153-102I9;0.93452!13425-144D5;0.832819!13433-144E4;0.353917!13437-144E8;0.301704!11904-125F5;0.502455!11905-125F6;0.138188!10039-101F3;0.0782987!10791-110H8;0.870914!10017-101C8;0.982537!10045-101F9;0.890971!10509-107D5;0.821512!10839-111E2;0.635115!10692-109F8;0.939489!10079-102A7;0.785374!10078-102A6;0.238094!10721-110A1;0.0694153!10569-108B2;0.798956!10570-108B3;0.0754229!10571-108B4;0.0677267!10647-109A8;0.0618401!10752-110D5;0.695901!10782-110G8;0.529783!10726-110A6;0.990728!10018-101C9;0.152083!10086-102B5;0.584149!10182-103D2;0.991191!10165-103B3;0.774528!10499-107C4;0.940793!10408-106B3;0.181438!10019-101D1;0.244874!10068-101I5;0.715501!10075-102A3;0.238416!10077-102A5;0.639793!10727-110A7;0.856067!10775-110G1;0.252058!10412-106B7;0.510667!12231-129F8;0.852259!12232-129F9;0.0325476!12233-129G1;0.299741!12234-129G2;0.158193!10414-106B9;0.053555!10170-103B8;0.999235!10183-103D3;0.567281!10150-102I6;0.77178!10174-103C3;0.978651!10155-103A2;0.549847!10038-101F2;0.793183!10838-111E1;0.678245!10759-110E3;0.379607!10514-107E1;0.44992!10465-106H6;0.795401!10691-109F7;0.940837!10843-111E6;0.713379!10844-111E7;0.1984!11747-123G1;0.632391!11748-123G2;0.126614!11749-123G3;0.0819286!11750-123G4;0.224946!11751-123G5;0.0922952!11840-124H4;0.0999838!11752-123G6;0.0834503!11753-123G7;0.0407459!11754-123G8;0.236676!11755-123G9;0.0594258!11756-123H1;0.35066!11833-124G6;0.155736!11760-123H5;0.202282!11836-124G9;0.218417!11758-123H3;0.160115!11835-124G8;0.0871304!11762-123H7;0.164574!11838-124H2;0.571056!11757-123H2;0.423372!11759-123H4;0.165988!11761-123H6;0.116686!11842-124H6;0.260209!11837-124H1;0.0156255!10568-108B1;0.24075!13230-141I8;0.38937!13231-141I9;0.0816772!10696-109G3;0.0659329!10493-107B7;0.578965!10494-107B8;0.19774!10850-111F4;0.271563!10851-111F5;0.872927!10852-111F6;0.944439!10853-111F7;0.697542!10854-111F8;0.472259!10855-111F9;0.787218!10856-111G1;0.945208!10847-111F1;0.626215!10846-111E9;0.840257!10848-111F2;0.306352!10845-111E8;0.310167!10857-111G2;0.370397!10858-111G3;0.599635!10156-103A3;0.586601!11901-125F2;0.926993!11902-125F3;0.18552!11903-125F4;0.125873!10689-109F5;0.271212!10648-109A9;0.934057!10784-110H1;0.628094!10744-110C6;0.29581!10772-110F7;0.235266!10474-106I6;0.782577!10600-108E6;0.604068!10684-109E9;0.510124!12226-129F3;0.803483!12227-129F4;0.757111!10508-107D4;0.450472!10539-107G8;0.901295!10607-108F4;0.693129!10555-107I6;0.620768!10774-110F9;0.421849!10637-108I7;0.263992!10663-109C6;0.379565!10728-110A8;0.33971!10729-110A9;0.0542265!10430-106D7;0.221613!10730-110B1;0.262533!10813-111B3;0.876404!10812-111B2;0.123917!10037-101F1;0.179053!10172-103C1;0.914752!10163-103B1;0.747593!10076-102A4;0.793502!10073-102A1;0.737456!10036-101E9;0.495976!10195-103E6;0.786771!10277-104E7;0.884798!10434-106E2;0.678485!10550-107I1;0.739978!10545-107H5;0.963151!10544-107H4;0.985844!10704-109H2;0.505155!10510-107D6;0.793446!10558-107I9;0.171752!10020-101D2;0.198603!10732-110B3;0.857247!10049-101G4;0.765276!10698-109G5;0.522615!10437-106E5;0.467285!10417-106C3;0.116839!10035-101E8;0.492865!10171-103B9;0.79064!10157-103A4;0.735355!10034-101E7;0.976297!10072-101I9;0.809142!10199-103F1;0.688266!10200-103F2;0.198777!10697-109G4;0.340514!10723-110A3;0.519946!10179-103C8;0.703457!10160-103A7;0.63656!10180-103C9;0.613952!10162-103A9;0.358407!10021-101D3;0.741066!10840-111E3;0.979817!10706-109H4;0.28187!10033-101E6;0.951046!10032-101E5;0.708475!10490-107B4;0.720282!10439-106E7;0.317428!10022-101D4;0.671275!10176-103C5;0.77532!10469-106I1;0.914432!10067-101I4;0.539169!10411-106B6;0.857993!10471-106I3;0.136727!10030-101E3;0.714651!10475-106I7;0.771758!10787-110H4;0.248039!10477-106I9;0.75682!10695-109G2;0.0887064!11771-123I7;0.87508!11772-123I8;0.719732!11773-123I9;0.57868!10093-102C3;0.839265!10442-106F1;0.254065!10442-106F1;0.375592!10201-103F3;0.332317!10639-108I9;0.332351!11843-124H7;0.419329!11841-124H5;0.248778!10693-109F9;0.682663!10436-106E4;0.138336!10483-107A6;0.591206!10282-104F3;0.172533!10023-101D5;0.172567!10066-101I3;0.36359!10065-101I2;0.416719!10800-110I8;0.432843!10610-108F7;0.935094!10841-111E4;0.415192!10541-107H1;0.353843!10842-111E5;0.903352!10562-108A4;0.665044!10024-101D6;0.983425!10064-101I1;0.765087!10609-108F6;0.716334!10048-101G3;0.726806!10781-110G7;0.824207!10181-103D1;0.236197!10159-103A6;0.79365!10056-101H2;0.874073!10737-110B8;0.687126!10025-101D7;0.0586987!10044-101F8;0.884637!10424-106D1;0.694686!10463-106H4;0.168341!10616-108G4;0.390291!10486-107A9;0.675559!10062-101H8;0.947208!10202-103F4;0.955676!10158-103A5;0.182137!10441-106E9;0.812719!10031-101E4;0.204706!10063-101H9;0.782734!10063-101H9;0.48685!11763-123H8;0.525444!11765-123I1;0.0327685!11768-123I4;0.223798!10807-111A6;0.200076!10790-110H7;0.0704766!10798-110I6;0.220536!10786-110H3;0.0784748!10591-108D6;0.586669!10593-108D8;0.942494!10590-108D5;0.789972!10026-101D8;0.846194!10096-102C6;0.165884!10168-103B6;0.140002!10154-103A1;0.558741!10209-103G2;0.813749!10061-101H7;0.138907!10027-101D9;0.405328!10043-101F7;0.549368!10783-110G9;0.763568!10028-101E1;0.205132!10060-101H6;0.940387!10203-103F5;0.254566!10059-101H5;0.171966!10047-101G2;0.241313!10029-101E2;0.502048!10058-101H4;0.427207!10418-106C4;0.392208!10492-107B6;0.550813!10694-109G1;0.402397!10797-110I5;0.986594!10057-101H3;0.0108367!10100-102D1;0.226513!10055-101H1;0.600493!10204-103F6;0.638709!10191-103E2;0.600664!10563-108A5;0.415078
|name=9-GATCCGCTA,CNhs13799,BestGuess:SPIB.p2.SwissRegulon.nucfreq(0.570792469807206),T:1309.0(27.04%),B:8805.0(20.32%),P:1e-28
|name=9-GATCCGCTA,CNhs13799,BestGuess:SPIB.p2.SwissRegulon.nucfreq(0.570792469807206),T:1309.0(27.04%),B:8805.0(20.32%),P:1e-28
|tomtom_result=ARR10#MA0121.1;1;0.00144851;0.689491;0.517146;7;GATCCGCTA;AGATCCGC;+!RDR1#MA0360.1;0;0.00190324;0.905944;0.517146;8;GATCCGCTA;GTTCCGCA;-!TBS1#MA0404.1;2;0.00217288;1.03429;0.517146;6;GATCCGCTA;CGGATCCG;+!YBR239C#MA0420.1;0;0.00530271;2.52409;1;8;GATCCGCTA;GTTCCGGT;-!STP4#MA0397.1;-2;0.0113813;5.4175;1;7;GATCCGCTA;TGCGCTATC;-!STP3#MA0396.1;-2;0.0118002;5.61689;1;7;GATCCGCTA;TGCGCTAGC;-!ASG1#MA0275.1;-1;0.0134312;6.39327;1;6;GATCCGCTA;TTCCGG;-!SPIB#MA0081.1;-1;0.0153073;7.28626;1;7;GATCCGCTA;TTCCTCT;-!ASH1#MA0276.1;3;0.015497;7.37658;1;7;GATCCGCTA;CCCGATCCGG;-
}}
}}

Latest revision as of 13:35, 7 September 2012

Full Name: 9-GATCCGCTA,CNhs13799,BestGuess:SPIB.p2.SwissRegulon.nucfreq(0.570792469807206),T:1309.0(27.04%),B:8805.0(20.32%),P:1e-28

Motif matrix
POACGT
190.3211.3091153.22964.141
21199.04483.77624.8711.309
31.3091.3091.3091305.073
4206.8221066.8351.30934.034
51.3091305.0731.3091.309
61.3091.3091305.0731.309
71.309993.531312.8511.309
857.596141.37279.8491030.183
91100.869147.91730.10730.107

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ARR10#MA0121.110.001448510.6894910.5171467GATCCGCTAAGATCCGC+
RDR1#MA0360.100.001903240.9059440.5171468GATCCGCTAGTTCCGCA-
TBS1#MA0404.120.002172881.034290.5171466GATCCGCTACGGATCCG+
YBR239C#MA0420.100.005302712.5240918GATCCGCTAGTTCCGGT-
STP4#MA0397.1-20.01138135.417517GATCCGCTATGCGCTATC-
STP3#MA0396.1-20.01180025.6168917GATCCGCTATGCGCTAGC-
ASG1#MA0275.1-10.01343126.3932716GATCCGCTATTCCGG-
SPIB#MA0081.1-10.01530737.2862617GATCCGCTATTCCTCT-
ASH1#MA0276.130.0154977.3765817GATCCGCTACCCGATCCGG-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:9-GATCCGCTA&oldid=2134053"