MacroAPE 1083:8-TGCTGATT: Difference between revisions
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(Created page with "{{Macroape_1083
|PWM=PO;A;C;G;T!1;289.801;77.712;101.997;1149.49!2;74.474;1.619;1450.624;92.283!3;1.619;1398.816;216.946;1.619!4;365.894;108.473;404.75;738.264!5;524.556;1.61...") |
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0789-110H6;0.86075!10828-111C9;0.706473!10788-110H5;0.911261!10792-110H9;0.595171!10765-110E9;0.58463!10829-111D1;0.958966!10830-111D2;0.892994!10831-111D3;0.645794!10832-111D4;0.952856!10833-111D5;0.894238!10764-110E8;0.854692!10770-110F5;0.407412!10399-106A3;0.378773!10400-106A4;0.395216!10405-106A9;0.332692!10834-111D6;0.353529!10835-111D7;0.687838!10836-111D8;0.378302!10837-111D9;0.873721!10699-109G6;0.798787!10802-111A1;0.948339!10796-110I4;0.642664!10010-101C1;0.486205!10810-111A9;0.853182!10421-106C7;0.781777!10708-109H6;0.835395!12235-129G3;0.702401!12236-129G4;0.0117299!12237-129G5;0.963634!10167-103B5;0.0174175!10151-102I7;0.0124219!10428-106D5;0.00895943!10795-110I3;0.708647!10805-111A4;0.565447!10052-101G7;0.79336!10189-103D9;0.897553!10589-108D4;0.576325!10425-106D2;0.958208!10427-106D4;0.24831!10702-109G9;0.809775!10432-106D9;0.218267!10496-107C1;0.393465!10718-109I7;0.267867!10011-101C2;0.51579!10053-101G8;0.701917!10686-109F2;0.610278!10084-102B3;0.570982!10012-101C3;0.0109191!10085-102B4;0.0110331!10482-107A5;0.000684411!10419-106C5;0.820217!10080-102A8;0.747513!10760-110E4;0.878282!10709-109H7;0.592455!10710-109H8;0.219614!10703-109H1;0.839548!10719-109I8;0.101829!10642-109A3;0.0769417!10177-103C6;0.0128505!10164-103B2;0.0197372!10173-103C2;0.00696498!10166-103B4;0.0102497!10083-102B2;0.0105036!10188-103D8;0.00886019!10552-107I3;0.0159146!10553-107I4;0.663226!10013-101C4;0.711013!10536-107G5;0.679447!10618-108G6;0.640701!10423-106C9;0.770875!10785-110H2;0.641414!12238-129G6;0.704353!12239-129G7;0.0101476!12240-129G8;0.0421575!10416-106C2;0.123474!10801-110I9;0.777457!10766-110F1;0.852512!10824-111C5;0.484!10825-111C6;0.399576!10826-111C7;0.318618!10454-106G4;0.346934!10409-106B4;0.644603!10638-108I8;0.77573!10636-108I6;0.313958!10513-107D9;0.400003!10420-106C6;0.665373!10082-102B1;0.417864!10014-101C5;0.212789!10070-101I7;0.652292!10452-106G2;0.599315!10453-106G3;0.920281!10449-106F8;0.944297!10042-101F6;0.915068!10069-101I6;0.0326956!10193-103E4;0.428341!10631-108I1;0.0105396!10438-106E6;0.874982!10488-107B2;0.363179!10196-103E7;0.429916!10071-101I8;0.713289!10071-101I8;0.277278!10041-101F5;0.00179851!10451-106G1;0.0826709!10450-106F9;0.930268!10604-108F1;0.661497!10605-108F2;0.569224!10606-108F3;0.242897!10603-108E9;0.426221!10497-107C2;0.190292!10448-106F7;0.152245!10643-109A4;0.123204!10426-106D3;0.129947!10431-106D8;0.335243!10197-103E8;0.193179!10443-106F2;0.739252!10815-111B5;0.71093!10816-111B6;0.955061!10817-111B7;0.997139!10015-101C6;0.922993!10410-106B5;0.739641!10054-101G9;0.784763!10758-110E2;0.156253!10711-109H9;0.245359!10040-101F4;0.528842!10470-106I2;0.0165654!10415-106C1;0.648333!10198-103E9;0.00959453!10614-108G2;0.947786!10612-108F9;0.105308!10549-107H9;0.588625!10615-108G3;0.637043!10487-107B1;0.375979!10433-106E1;0.226117!10688-109F4;0.618545!10444-106F3;0.252969!10444-106F3;0.408167!10485-107A8;0.388806!10413-106B8;0.882798!10175-103C4;0.826814!10161-103A8;0.00849437!12131-128D7;0.0102884!10624-108H3;0.143065!10712-109I1;0.161188!10205-103F7;0.797037!10206-103F8;0.789709!10207-103F9;0.80545!10050-101G5;0.624213!10051-101G6;0.242772!10016-101C7;0.509861!10046-101G1;0.707446!10778-110G4;0.713958!10633-108I3;0.10542!10818-111B8;0.919415!10819-111B9;0.686003!10820-111C1;0.645464!10484-107A7;0.730482!10808-111A7;0.39773!10169-103B7;0.655699!10153-102I9;0.0139139!13425-144D5;0.0137341!13433-144E4;0.455242!13437-144E8;0.553846!11904-125F5;0.426604!11905-125F6;0.413015!10039-101F3;0.244282!10791-110H8;0.0209502!10017-101C8;0.757679!10045-101F9;0.353878!10509-107D5;0.980597!10839-111E2;0.226993!10692-109F8;0.877939!10079-102A7;0.458201!10078-102A6;0.974625!10721-110A1;0.582592!10569-108B2;0.928427!10570-108B3;0.745382!10571-108B4;0.453963!10647-109A8;0.885674!10752-110D5;0.33973!10782-110G8;0.557908!10726-110A6;0.179653!10018-101C9;0.49718!10086-102B5;0.19222!10182-103D2;0.719812!10165-103B3;0.00514952!10499-107C4;0.0104343!10408-106B3;0.554639!10019-101D1;0.603975!10068-101I5;0.81684!10075-102A3;0.86129!10077-102A5;0.849078!10727-110A7;0.454983!10775-110G1;0.332065!10412-106B7;0.800737!12231-129F8;0.51044!12232-129F9;0.138333!12233-129G1;0.253604!12234-129G2;0.288156!10414-106B9;0.175299!10170-103B8;0.882128!10183-103D3;0.0104772!10150-102I6;0.0167643!10174-103C3;0.0115504!10155-103A2;0.0192598!10038-101F2;0.0188284!10838-111E1;0.0152156!10759-110E3;0.0284247!10514-107E1;0.545737!10465-106H6;0.396873!10691-109F7;0.824782!10843-111E6;0.153906!10844-111E7;0.0520066!11747-123G1;0.00161561!11748-123G2;0.664914!11749-123G3;0.543411!11750-123G4;0.406459!11751-123G5;0.308421!11840-124H4;0.632999!11752-123G6;0.457973!11753-123G7;0.208431!11754-123G8;0.544869!11755-123G9;0.727881!11756-123H1;0.434588!11833-124G6;0.236894!11760-123H5;0.135271!11836-124G9;0.142632!11758-123H3;0.858637!11835-124G8;0.105809!11762-123H7;0.0891239!11838-124H2;0.292756!11757-123H2;0.106065!11759-123H4;0.102572!11761-123H6;0.138298!11842-124H6;0.269078!11837-124H1;0.0967539!10568-108B1;0.0629322!13230-141I8;0.879021!13231-141I9;0.755354!10696-109G3;0.899093!10493-107B7;0.377393!10494-107B8;0.372211!10850-111F4;0.696601!10851-111F5;0.188923!10852-111F6;0.166278!10853-111F7;0.0851782!10854-111F8;0.66277!10855-111F9;0.297819!10856-111G1;0.512759!10847-111F1;0.239406!10846-111E9;0.524299!10848-111F2;0.26995!10845-111E8;0.962543!10857-111G2;0.839932!10858-111G3;0.720831!10156-103A3;0.270335!11901-125F2;0.0142565!11902-125F3;0.499179!11903-125F4;0.452105!10689-109F5;0.353526!10648-109A9;0.237473!10784-110H1;0.771501!10744-110C6;0.508422!10772-110F7;0.953981!10474-106I6;0.520956!10600-108E6;0.616063!10684-109E9;0.721351!12226-129F3;0.429816!12227-129F4;0.00369984!10508-107D4;0.750867!10539-107G8;0.00570392!10607-108F4;0.000635954!10555-107I6;0.075896!10774-110F9;0.000832042!10637-108I7;0.735741!10663-109C6;0.0310915!10728-110A8;0.00188796!10729-110A9;0.450738!10430-106D7;0.127281!10730-110B1;0.991263!10813-111B3;0.00819013!10812-111B2;0.197102!10037-101F1;0.0146773!10172-103C1;0.0178393!10163-103B1;0.00957045!10076-102A4;0.0123835!10073-102A1;0.012827!10036-101E9;0.00107112!10195-103E6;0.0171029!10277-104E7;0.0158944!10434-106E2;0.0603241!10550-107I1;0.133383!10545-107H5;0.310519!10544-107H4;0.311684!10704-109H2;0.113516!10510-107D6;0.180213!10558-107I9;0.85395!10020-101D2;0.127983!10732-110B3;0.916367!10049-101G4;0.114733!10698-109G5;0.412465!10437-106E5;0.801243!10417-106C3;0.74544!10035-101E8;0.143113!10171-103B9;0.0205943!10157-103A4;0.0158782!10034-101E7;0.0152275!10072-101I9;0.019743!10199-103F1;0.000433097!10200-103F2;0.0528891!10697-109G4;0.640393!10723-110A3;0.000839843!10179-103C8;0.153077!10160-103A7;0.0209288!10180-103C9;0.0190577!10162-103A9;0.149478!10021-101D3;0.134006!10840-111E3;0.204572!10706-109H4;0.683642!10033-101E6;0.116602!10032-101E5;0.0208985!10490-107B4;0.017256!10439-106E7;0.781709!10022-101D4;0.409878!10176-103C5;0.532098!10469-106I1;0.00468755!10067-101I4;0.423537!10411-106B6;0.0953867!10471-106I3;0.309197!10030-101E3;0.203502!10475-106I7;0.0692166!10787-110H4;0.624715!10477-106I9;0.894333!10695-109G2;0.641275!11771-123I7;0.643766!11772-123I8;0.55979!11773-123I9;0.169219!10093-102C3;0.262814!10442-106F1;0.0603103!10442-106F1;0.848264!10201-103F3;0.867941!10639-108I9;0.471243!11843-124H7;0.0807074!11841-124H5;0.0313375!10693-109F9;0.969914!10436-106E4;0.0770318!10483-107A6;0.7222!10282-104F3;0.506252!10023-101D5;0.305211!10066-101I3;0.323148!10065-101I2;0.937259!10800-110I8;0.9521!10610-108F7;0.0610343!10841-111E4;0.934451!10541-107H1;0.729317!10842-111E5;0.606899!10562-108A4;0.0716664!10024-101D6;0.0174079!10064-101I1;0.787007!10609-108F6;0.484034!10048-101G3;0.342547!10781-110G7;0.831396!10181-103D1;0.0270772!10159-103A6;0.00359648!10056-101H2;0.0124178!10737-110B8;0.00249682!10025-101D7;0.0590297!10044-101F8;0.650132!10424-106D1;0.829088!10463-106H4;0.566332!10616-108G4;0.157002!10486-107A9;0.0434944!10062-101H8;0.128076!10202-103F4;0.316809!10158-103A5;0.211211!10441-106E9;0.0366047!10031-101E4;0.396183!10063-101H9;0.0171276!10063-101H9;0.00117298!11763-123H8;0.194567!11765-123I1;0.986204!11768-123I4;0.831056!10807-111A6;0.507081!10790-110H7;0.995127!10798-110I6;0.170772!10786-110H3;0.634393!10591-108D6;0.415007!10593-108D8;0.485314!10590-108D5;0.650056!10026-101D8;0.772803!10096-102C6;0.95455!10168-103B6;0.327576!10154-103A1;0.0155221!10209-103G2;0.0158752!10061-101H7;0.744538!10027-101D9;0.729296!10043-101F7;0.311204!10783-110G9;0.202234!10028-101E1;0.83942!10060-101H6;0.863823!10203-103F5;0.425013!10059-101H5;0.565029!10047-101G2;0.559622!10029-101E2;0.393615!10058-101H4;0.600463!10418-106C4;0.940169!10492-107B6;0.657457!10694-109G1;0.277237!10797-110I5;0.880295!10057-101H3;0.379185!10100-102D1;0.498295!10055-101H1;0.893223!10204-103F6;0.477391!10191-103E2;0.221675!10563-108A5;0.797346 | ||
|name=8-TGCTGATT,BestGuess:VSX2_si_HMv8(0.725637678725681),T:1619.0(29.95%),B:9670.9(22.47%),P:1e-32 | |name=8-TGCTGATT,BestGuess:VSX2_si_HMv8(0.725637678725681),T:1619.0(29.95%),B:9670.9(22.47%),P:1e-32 | ||
|tomtom_result=SWI5#MA0402.1;0;0.00411331;1.95793;1;8;TGCTGATT;TGCTGGTT;+!NFYA#MA0060.1;1;0.00433851;2.06513;1;8;TGCTGATT;GCGCTGATTGGCTGAG;-!NFE2L2#MA0150.1;0;0.00485895;2.31286;1;8;TGCTGATT;TGCTGAGTCAT;-!SMP1#MA0383.1;0;0.00556035;2.64673;1;8;TGCTGATT;TGCTAATTTAATTATAGGTAA;-!run::Bgb#MA0242.1;1;0.00640326;3.04795;1;8;TGCTGATT;TTGCGGTTA;-!nub#MA0453.1;2;0.00743102;3.53716;1;8;TGCTGATT;TATGCAAATTAG;+!mab-3#MA0262.1;5;0.0087866;4.18242;1;8;TGCTGATT;AATGTTGCGAATT;+!HAP5#MA0316.1;4;0.012791;6.08852;1;8;TGCTGATT;TGGGATCTGATTGGT;+!HAP4#MA0315.1;4;0.0134858;6.41924;1;8;TGCTGATT;TCGCCTCTGATTGGT;-!Pou5f1#MA0142.1;8;0.0157627;7.50302;1;7;TGCTGATT;CTTTGTTATGCAAAT;+!ACE2#MA0267.1;0;0.0172098;8.19185;1;7;TGCTGATT;TGCTGGT;-!Pdx1#MA0132.1;-2;0.0184634;8.78857;1;6;TGCTGATT;CTAATT;+!Mafb#MA0117.1;-1;0.0200169;9.52805;1;7;TGCTGATT;GCTGACGG;+ | |||
}} | }} |
Latest revision as of 13:50, 7 September 2012
Full Name: 8-TGCTGATT,BestGuess:VSX2_si_HMv8(0.725637678725681),T:1619.0(29.95%),B:9670.9(22.47%),P:1e-32
Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||
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|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
---|---|---|---|---|---|---|---|---|
SWI5#MA0402.1 | 0 | 0.00411331 | 1.95793 | 1 | 8 | TGCTGATT | TGCTGGTT | + |
NFYA#MA0060.1 | 1 | 0.00433851 | 2.06513 | 1 | 8 | TGCTGATT | GCGCTGATTGGCTGAG | - |
NFE2L2#MA0150.1 | 0 | 0.00485895 | 2.31286 | 1 | 8 | TGCTGATT | TGCTGAGTCAT | - |
SMP1#MA0383.1 | 0 | 0.00556035 | 2.64673 | 1 | 8 | TGCTGATT | TGCTAATTTAATTATAGGTAA | - |
run::Bgb#MA0242.1 | 1 | 0.00640326 | 3.04795 | 1 | 8 | TGCTGATT | TTGCGGTTA | - |
nub#MA0453.1 | 2 | 0.00743102 | 3.53716 | 1 | 8 | TGCTGATT | TATGCAAATTAG | + |
mab-3#MA0262.1 | 5 | 0.0087866 | 4.18242 | 1 | 8 | TGCTGATT | AATGTTGCGAATT | + |
HAP5#MA0316.1 | 4 | 0.012791 | 6.08852 | 1 | 8 | TGCTGATT | TGGGATCTGATTGGT | + |
HAP4#MA0315.1 | 4 | 0.0134858 | 6.41924 | 1 | 8 | TGCTGATT | TCGCCTCTGATTGGT | - |
Pou5f1#MA0142.1 | 8 | 0.0157627 | 7.50302 | 1 | 7 | TGCTGATT | CTTTGTTATGCAAAT | + |
ACE2#MA0267.1 | 0 | 0.0172098 | 8.19185 | 1 | 7 | TGCTGATT | TGCTGGT | - |
Pdx1#MA0132.1 | -2 | 0.0184634 | 8.78857 | 1 | 6 | TGCTGATT | CTAATT | + |
Mafb#MA0117.1 | -1 | 0.0200169 | 9.52805 | 1 | 7 | TGCTGATT | GCTGACGG | + |