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MacroAPE 1083:9-VCTTKCTKC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;159.229;125.902;178.273;65.596!2;17.986;290.95;187.795;32.269!3;26.45;134.895;13.225;354.43!4;25.921;57.661;100.51;344.908!5;14.283;132.25;2...")
 
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32752!10789-110H6;0.749164!10828-111C9;0.273019!10788-110H5;0.929242!10792-110H9;0.519212!10765-110E9;0.807241!10829-111D1;0.323626!10830-111D2;0.88618!10831-111D3;0.694455!10832-111D4;0.39462!10833-111D5;0.43291!10764-110E8;0.377991!10770-110F5;0.34399!10399-106A3;0.87952!10400-106A4;0.301059!10405-106A9;0.261085!10834-111D6;0.289243!10835-111D7;0.659069!10836-111D8;0.269729!10837-111D9;0.357212!10699-109G6;0.568372!10802-111A1;0.486044!10796-110I4;0.536391!10010-101C1;0.0691366!10810-111A9;0.703826!10421-106C7;0.225113!10708-109H6;0.986647!12235-129G3;0.0939682!12236-129G4;0.935883!12237-129G5;0.366766!10167-103B5;0.847871!10151-102I7;0.244331!10428-106D5;0.319511!10795-110I3;0.387138!10805-111A4;0.227963!10052-101G7;0.161363!10189-103D9;0.361275!10589-108D4;0.424788!10425-106D2;0.187769!10427-106D4;0.991141!10702-109G9;0.835351!10432-106D9;0.568799!10496-107C1;0.215963!10718-109I7;0.353369!10011-101C2;0.147304!10053-101G8;0.545876!10686-109F2;0.278531!10084-102B3;0.951598!10012-101C3;0.339071!10085-102B4;0.25809!10482-107A5;0.908031!10419-106C5;0.48193!10080-102A8;0.130443!10760-110E4;0.848626!10709-109H7;0.387135!10710-109H8;0.256069!10703-109H1;0.374336!10719-109I8;0.407996!10642-109A3;0.63268!10177-103C6;0.161296!10164-103B2;0.541104!10173-103C2;0.55795!10166-103B4;0.4718!10083-102B2;0.406766!10188-103D8;0.462858!10552-107I3;0.318683!10553-107I4;0.24066!10013-101C4;0.213414!10536-107G5;0.288674!10618-108G6;0.371808!10423-106C9;0.314021!10785-110H2;0.209944!12238-129G6;0.121354!12239-129G7;0.599749!12240-129G8;0.424304!10416-106C2;0.64578!10801-110I9;0.949593!10766-110F1;0.099479!10824-111C5;0.284245!10825-111C6;0.233122!10826-111C7;0.245102!10454-106G4;0.261758!10409-106B4;0.187229!10638-108I8;0.170631!10636-108I6;0.267703!10513-107D9;0.349082!10420-106C6;0.518524!10082-102B1;0.236007!10014-101C5;0.938552!10070-101I7;0.840767!10452-106G2;0.662614!10453-106G3;0.948751!10449-106F8;0.858666!10042-101F6;0.698367!10069-101I6;0.532953!10193-103E4;0.684837!10631-108I1;0.28812!10438-106E6;0.868364!10488-107B2;0.339744!10196-103E7;0.15236!10071-101I8;0.943163!10071-101I8;0.822557!10041-101F5;0.239364!10451-106G1;0.482944!10450-106F9;0.515072!10604-108F1;0.315233!10605-108F2;0.503775!10606-108F3;0.559289!10603-108E9;0.406931!10497-107C2;0.297078!10448-106F7;0.273857!10643-109A4;0.943314!10426-106D3;0.32961!10431-106D8;0.184984!10197-103E8;0.165223!10443-106F2;0.485277!10815-111B5;0.393242!10816-111B6;0.301636!10817-111B7;0.256107!10015-101C6;0.272581!10410-106B5;0.604846!10054-101G9;0.0207473!10758-110E2;0.307983!10711-109H9;0.90161!10040-101F4;0.628855!10470-106I2;0.268848!10415-106C1;0.246851!10198-103E9;0.479419!10614-108G2;0.495156!10612-108F9;0.151698!10549-107H9;0.100372!10615-108G3;0.242441!10487-107B1;0.217398!10433-106E1;0.767178!10688-109F4;0.195704!10444-106F3;0.22129!10444-106F3;0.687528!10485-107A8;0.736927!10413-106B8;0.128322!10175-103C4;0.489746!10161-103A8;0.576286!12131-128D7;0.55186!10624-108H3;0.84068!10712-109I1;0.826931!10205-103F7;0.365656!10206-103F8;0.614843!10207-103F9;0.786344!10050-101G5;0.885904!10051-101G6;0.542603!10016-101C7;0.990288!10046-101G1;0.91941!10778-110G4;0.753199!10633-108I3;0.624385!10818-111B8;0.225783!10819-111B9;0.20136!10820-111C1;0.205545!10484-107A7;0.206036!10808-111A7;0.136898!10169-103B7;0.888733!10153-102I9;0.328207!13425-144D5;0.425366!13433-144E4;0.541143!13437-144E8;0.569332!11904-125F5;0.415355!11905-125F6;0.467013!10039-101F3;0.583191!10791-110H8;0.250007!10017-101C8;0.325787!10045-101F9;0.356015!10509-107D5;0.364404!10839-111E2;0.350322!10692-109F8;0.673371!10079-102A7;0.103039!10078-102A6;0.712446!10721-110A1;0.79076!10569-108B2;0.320207!10570-108B3;0.0250024!10571-108B4;0.168641!10647-109A8;0.0251104!10752-110D5;0.569573!10782-110G8;0.107839!10726-110A6;0.929211!10018-101C9;0.45933!10086-102B5;0.47005!10182-103D2;0.0944824!10165-103B3;0.457322!10499-107C4;0.442541!10408-106B3;0.297887!10019-101D1;0.49473!10068-101I5;0.630848!10075-102A3;0.393165!10077-102A5;0.44047!10727-110A7;0.385984!10775-110G1;0.866125!10412-106B7;0.510557!12231-129F8;0.545478!12232-129F9;0.327917!12233-129G1;0.486448!12234-129G2;0.417163!10414-106B9;0.0683206!10170-103B8;0.299968!10183-103D3;0.291802!10150-102I6;0.234285!10174-103C3;0.284947!10155-103A2;0.80428!10038-101F2;0.512498!10838-111E1;0.318804!10759-110E3;0.0363163!10514-107E1;0.683744!10465-106H6;0.175982!10691-109F7;0.126055!10843-111E6;0.923011!10844-111E7;0.128002!11747-123G1;0.166765!11748-123G2;0.328619!11749-123G3;0.546265!11750-123G4;0.194584!11751-123G5;0.137858!11840-124H4;0.290059!11752-123G6;0.30282!11753-123G7;0.793905!11754-123G8;0.124758!11755-123G9;0.179932!11756-123H1;0.42791!11833-124G6;0.565382!11760-123H5;0.275597!11836-124G9;0.282275!11758-123H3;0.0273037!11835-124G8;0.261544!11762-123H7;0.0515973!11838-124H2;0.693777!11757-123H2;0.489223!11759-123H4;0.372767!11761-123H6;0.088151!11842-124H6;0.346549!11837-124H1;0.0854347!10568-108B1;0.0705753!13230-141I8;0.544256!13231-141I9;0.387502!10696-109G3;0.374695!10493-107B7;0.277282!10494-107B8;0.053655!10850-111F4;0.170903!10851-111F5;0.210445!10852-111F6;0.624098!10853-111F7;0.602927!10854-111F8;0.318405!10855-111F9;0.993717!10856-111G1;0.601007!10847-111F1;0.145909!10846-111E9;0.507684!10848-111F2;0.645029!10845-111E8;0.409626!10857-111G2;0.480528!10858-111G3;0.30457!10156-103A3;0.571873!11901-125F2;0.275864!11902-125F3;0.998485!11903-125F4;0.960708!10689-109F5;0.977732!10648-109A9;0.264671!10784-110H1;0.198542!10744-110C6;0.222215!10772-110F7;0.415962!10474-106I6;0.26117!10600-108E6;0.763487!10684-109E9;0.175029!12226-129F3;0.658269!12227-129F4;0.466257!10508-107D4;0.250833!10539-107G8;0.162301!10607-108F4;0.303616!10555-107I6;0.156262!10774-110F9;0.154236!10637-108I7;0.0909414!10663-109C6;0.513128!10728-110A8;0.175089!10729-110A9;0.260263!10430-106D7;0.848168!10730-110B1;0.610655!10813-111B3;0.370629!10812-111B2;0.733455!10037-101F1;0.555772!10172-103C1;0.310289!10163-103B1;0.267216!10076-102A4;0.340544!10073-102A1;0.284511!10036-101E9;0.622417!10195-103E6;0.309911!10277-104E7;0.246019!10434-106E2;0.468284!10550-107I1;0.337254!10545-107H5;0.276831!10544-107H4;0.307258!10704-109H2;0.252496!10510-107D6;0.188267!10558-107I9;0.317993!10020-101D2;0.061786!10732-110B3;0.672452!10049-101G4;0.820979!10698-109G5;0.301476!10437-106E5;0.230854!10417-106C3;0.984198!10035-101E8;0.312992!10171-103B9;0.303981!10157-103A4;0.263458!10034-101E7;0.325243!10072-101I9;0.27462!10199-103F1;0.602644!10200-103F2;0.55079!10697-109G4;0.513456!10723-110A3;0.283552!10179-103C8;0.374447!10160-103A7;0.949667!10180-103C9;0.98658!10162-103A9;0.880558!10021-101D3;0.809358!10840-111E3;0.763849!10706-109H4;0.884802!10033-101E6;0.682826!10032-101E5;0.304951!10490-107B4;0.287523!10439-106E7;0.218816!10022-101D4;0.306785!10176-103C5;0.606635!10469-106I1;0.455615!10067-101I4;0.0430072!10411-106B6;0.814276!10471-106I3;0.327684!10030-101E3;0.337738!10475-106I7;0.797026!10787-110H4;0.1163!10477-106I9;0.112728!10695-109G2;0.149402!11771-123I7;0.784793!11772-123I8;0.580447!11773-123I9;0.837733!10093-102C3;0.458202!10442-106F1;0.566441!10442-106F1;0.496309!10201-103F3;0.918242!10639-108I9;0.768951!11843-124H7;0.613549!11841-124H5;0.702915!10693-109F9;0.559744!10436-106E4;0.441275!10483-107A6;0.330614!10282-104F3;0.393316!10023-101D5;0.94691!10066-101I3;0.894737!10065-101I2;0.852999!10800-110I8;0.528096!10610-108F7;0.227045!10841-111E4;0.0479277!10541-107H1;0.12358!10842-111E5;0.256032!10562-108A4;0.323073!10024-101D6;0.284114!10064-101I1;0.830903!10609-108F6;0.747342!10048-101G3;0.815886!10781-110G7;0.496797!10181-103D1;0.854348!10159-103A6;0.542192!10056-101H2;0.516657!10737-110B8;0.371107!10025-101D7;0.616078!10044-101F8;0.751592!10424-106D1;0.823388!10463-106H4;0.724404!10616-108G4;0.29152!10486-107A9;0.969521!10062-101H8;0.918546!10202-103F4;0.77424!10158-103A5;0.413128!10441-106E9;0.687826!10031-101E4;0.057561!10063-101H9;0.320306!10063-101H9;0.310054!11763-123H8;0.427654!11765-123I1;0.199975!11768-123I4;0.507943!10807-111A6;0.301128!10790-110H7;0.446117!10798-110I6;0.594782!10786-110H3;0.124393!10591-108D6;0.428124!10593-108D8;0.312213!10590-108D5;0.525694!10026-101D8;0.326752!10096-102C6;0.292002!10168-103B6;0.189289!10154-103A1;0.423643!10209-103G2;0.445896!10061-101H7;0.467076!10027-101D9;0.562154!10043-101F7;0.795404!10783-110G9;0.657682!10028-101E1;0.67274!10060-101H6;0.557537!10203-103F5;0.774761!10059-101H5;0.634046!10047-101G2;0.643167!10029-101E2;0.279289!10058-101H4;0.516006!10418-106C4;0.391382!10492-107B6;0.172501!10694-109G1;0.233049!10797-110I5;0.365683!10057-101H3;0.282635!10100-102D1;0.568181!10055-101H1;0.341692!10204-103F6;0.857356!10191-103E2;0.989751!10563-108A5;0.550208
|name=9-VCTTKCTKC,CNhs13512,BestGuess:ETS1,2.p2.SwissRegulon.nucfreq(0.628080460919971),T:529.0(20.76%),B:5677.6(12.79%),P:1e-28
|name=9-VCTTKCTKC,CNhs13512,BestGuess:ETS1,2.p2.SwissRegulon.nucfreq(0.628080460919971),T:529.0(20.76%),B:5677.6(12.79%),P:1e-28
|tomtom_result=Klf4#MA0039.1;0;0.00466774;2.22184;1;9;GCTTGCTTC;CCTTCCTTTA;-!SFL1#MA0377.1;3;0.00880922;4.19319;1;9;GCTTGCTTC;TTTTATTTCTTCTATTCTCTA;-!EWSR1-FLI1#MA0149.1;0;0.0103393;4.9215;1;9;GCTTGCTTC;CCTTCCTTCCTTCCTTCC;-!DOT6#MA0351.1;0;0.0115096;5.47855;1;9;GCTTGCTTC;TTCTGCACCTCATCGCATCCT;+!SPI1#MA0080.2;0;0.0147167;7.00515;1;7;GCTTGCTTC;ACTTCCT;-
}}
}}

Latest revision as of 14:03, 7 September 2012

Full Name: 9-VCTTKCTKC,CNhs13512,BestGuess:ETS1,2.p2.SwissRegulon.nucfreq(0.628080460919971),T:529.0(20.76%),B:5677.6(12.79%),P:1e-28

Motif matrix
POACGT
1159.229125.902178.27365.596
217.986290.95187.79532.269
326.45134.89513.225354.43
425.92157.661100.51344.908
514.283132.25214.245168.222
613.225343.32115.87156.584
738.61787.28530.682372.416
829.09571.415185.15243.34
924.863457.5856.34840.204

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Klf4#MA0039.100.004667742.2218419GCTTGCTTCCCTTCCTTTA-
SFL1#MA0377.130.008809224.1931919GCTTGCTTCTTTTATTTCTTCTATTCTCTA-
EWSR1-FLI1#MA0149.100.01033934.921519GCTTGCTTCCCTTCCTTCCTTCCTTCC-
DOT6#MA0351.100.01150965.4785519GCTTGCTTCTTCTGCACCTCATCGCATCCT+
SPI1#MA0080.200.01471677.0051517GCTTGCTTCACTTCCT-
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