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MacroAPE 1083:CNhs11828 bu f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.0;113.07266420001709;0.0;72.17352305907278!2;0.0;0.2920044382307436;0.0;184.95418282085905!3;0.44665627935193153;5.784748035122733;26.1527...")
 
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!11292-117A5;0.0728327!11369-118A1;0.0391895!11441-118I1;0.375448!10007-101B4;0.155284!11520-119H8;0.0857193!11600-120H7;0.220672!11681-122H7;0.852223!11216-116B1;0.546299!12179-129A1;0.029014!12180-129A2;0.00316153!12181-129A3;0.000804734!12176-128I7;0.00157951!12177-128I8;0.000476724!12182-129A4;0.000776661!12183-129A5;0.00246507!12184-129A6;0.00336839!10809-111A8;0.000314294!10597-108E3;0.0643789!10717-109I6;0.0809736!10455-106G5;0.0653027!10534-107G3;0.10116!10429-106D6;0.408835!10464-106H5;0.244395!10827-111C8;0.202213!10789-110H6;0.000144955!10828-111C9;0.0036783!10788-110H5;0.000730866!10792-110H9;0.00837279!10765-110E9;0.00629421!10829-111D1;0.0187481!10830-111D2;0.0127902!10831-111D3;0.0606609!10832-111D4;0.0294743!10833-111D5;0.000489847!10764-110E8;0.00192061!10770-110F5;0.00408886!10399-106A3;0.0125371!10400-106A4;0.00959828!10405-106A9;0.0116501!10834-111D6;0.0115079!10835-111D7;0.0053586!10836-111D8;0.947578!10837-111D9;0.25661!10699-109G6;0.00466182!10802-111A1;0.436634!10796-110I4;0.171334!10010-101C1;0.982017!10810-111A9;0.00880474!10421-106C7;0.00181823!10708-109H6;0.423542!12235-129G3;0.428362!12236-129G4;0.157496!12237-129G5;0.554975!10167-103B5;0.196603!10151-102I7;0.732298!10428-106D5;0.529365!10795-110I3;0.528186!10805-111A4;0.943665!10052-101G7;0.00384104!10189-103D9;0.458175!10589-108D4;0.000221493!10425-106D2;0.868361!10427-106D4;8.44397e-05!10702-109G9;0.0961697!10432-106D9;0.00548051!10496-107C1;0.721217!10718-109I7;0.500735!10011-101C2;0.000810609!10053-101G8;0.0168784!10686-109F2;0.00519493!10084-102B3;0.000268435!10012-101C3;0.485584!10085-102B4;0.426745!10482-107A5;0.588208!10419-106C5;0.0175818!10080-102A8;0.00263063!10760-110E4;0.0126239!10709-109H7;0.265865!10710-109H8;0.500081!10703-109H1;0.00233619!10719-109I8;0.112663!10642-109A3;0.0506331!10177-103C6;0.0707829!10164-103B2;0.535457!10173-103C2;0.604838!10166-103B4;0.948117!10083-102B2;0.917928!10188-103D8;0.93668!10552-107I3;0.994262!10553-107I4;0.0281253!10013-101C4;0.014177!10536-107G5;0.103685!10618-108G6;0.0185723!10423-106C9;0.148293!10785-110H2;0.346265!12238-129G6;0.076468!12239-129G7;0.800962!12240-129G8;0.00570901!10416-106C2;0.963374!10801-110I9;0.058943!10766-110F1;0.00112907!10824-111C5;0.0239799!10825-111C6;0.476612!10826-111C7;0.584347!10454-106G4;0.422565!10409-106B4;0.425258!10638-108I8;0.0252233!10636-108I6;0.172975!10513-107D9;0.0505527!10420-106C6;0.133528!10082-102B1;0.323203!10014-101C5;0.14909!10070-101I7;0.000569711!10452-106G2;0.0588564!10453-106G3;0.004284!10449-106F8;0.05748!10042-101F6;0.140546!10069-101I6;0.526968!10193-103E4;0.891043!10631-108I1;0.756693!10438-106E6;0.226335!10488-107B2;0.0119435!10196-103E7;0.113951!10071-101I8;0.186413!10071-101I8;0.0052584!10041-101F5;0.363247!10451-106G1;0.0073427!10450-106F9;0.00149729!10604-108F1;0.0776534!10605-108F2;0.316702!10606-108F3;0.174999!10603-108E9;0.164016!10497-107C2;0.218281!10448-106F7;0.129678!10643-109A4;0.246199!10426-106D3;0.415602!10431-106D8;0.0585515!10197-103E8;0.0055417!10443-106F2;0.221269!10815-111B5;0.00058217!10816-111B6;0.0740214!10817-111B7;0.0382487!10015-101C6;0.083017!10410-106B5;0.199498!10054-101G9;0.0269089!10758-110E2;0.777206!10711-109H9;0.0433856!10040-101F4;0.317755!10470-106I2;0.804085!10415-106C1;0.798948!10198-103E9;0.246587!10614-108G2;0.00732021!10612-108F9;0.108265!10549-107H9;0.135727!10615-108G3;0.018389!10487-107B1;0.57498!10433-106E1;0.490338!10688-109F4;0.776752!10444-106F3;0.0517116!10444-106F3;0.0443937!10485-107A8;0.0575089!10413-106B8;0.0997274!10175-103C4;0.000812736!10161-103A8;0.39004!12131-128D7;0.222933!10624-108H3;0.103945!10712-109I1;0.00114935!10205-103F7;0.143075!10206-103F8;0.87727!10207-103F9;0.940923!10050-101G5;0.497996!10051-101G6;0.412286!10016-101C7;0.595177!10046-101G1;0.592524!10778-110G4;0.790189!10633-108I3;0.0107442!10818-111B8;0.451374!10819-111B9;0.224841!10820-111C1;0.209237!10484-107A7;0.26082!10808-111A7;0.24323!10169-103B7;0.4207!10153-102I9;0.454979!13425-144D5;0.437582!13433-144E4;0.416778!13437-144E8;0.33065!11904-125F5;0.449719!11905-125F6;0.161768!10039-101F3;0.496619!10791-110H8;0.840055!10017-101C8;0.220432!10045-101F9;0.022928!10509-107D5;0.782528!10839-111E2;0.0486334!10692-109F8;0.987077!10079-102A7;0.000541515!10078-102A6;0.0938386!10721-110A1;0.419558!10569-108B2;0.0451034!10570-108B3;0.234739!10571-108B4;0.317298!10647-109A8;0.153683!10752-110D5;0.00984509!10782-110G8;0.0135589!10726-110A6;1.26705e-05!10018-101C9;0.131462!10086-102B5;0.0519918!10182-103D2;0.282127!10165-103B3;0.706013!10499-107C4;0.290229!10408-106B3;0.24618!10019-101D1;0.778923!10068-101I5;0.000527895!10075-102A3;0.479964!10077-102A5;9.24886e-05!10727-110A7;7.44328e-09!10775-110G1;0.0142025!10412-106B7;0.15834!12231-129F8;0.040064!12232-129F9;0.67828!12233-129G1;0.936063!12234-129G2;0.815659!10414-106B9;0.546329!10170-103B8;0.0993623!10183-103D3;0.880996!10150-102I6;0.755981!10174-103C3;0.578329!10155-103A2;0.513468!10038-101F2;0.260128!10838-111E1;0.298094!10759-110E3;0.0463953!10514-107E1;0.0490256!10465-106H6;0.550693!10691-109F7;0.285451!10843-111E6;0.653985!10844-111E7;0.162764!11747-123G1;0.15669!11748-123G2;0.000231073!11749-123G3;2.70656e-05!11750-123G4;0.125077!11751-123G5;0.00127939!11840-124H4;0.0230535!11752-123G6;0.165719!11753-123G7;0.00401927!11754-123G8;0.0234688!11755-123G9;0.0132986!11756-123H1;0.0134862!11833-124G6;0.0020131!11760-123H5;0.0301514!11836-124G9;0.0236302!11758-123H3;0.0631073!11835-124G8;0.00551201!11762-123H7;0.0231401!11838-124H2;0.00656968!11757-123H2;0.0159888!11759-123H4;0.000115415!11761-123H6;0.000122459!11842-124H6;0.0356207!11837-124H1;0.0035353!10568-108B1;0.0170803!13230-141I8;0.0117655!13231-141I9;0.0124484!10696-109G3;0.0235522!10493-107B7;0.044657!10494-107B8;0.000566509!10850-111F4;0.0443417!10851-111F5;0.129963!10852-111F6;0.0126759!10853-111F7;0.0537373!10854-111F8;0.0113605!10855-111F9;0.000589124!10856-111G1;0.663554!10847-111F1;0.126161!10846-111E9;0.1892!10848-111F2;0.0366458!10845-111E8;0.00485731!10857-111G2;0.0868082!10858-111G3;0.0172576!10156-103A3;0.000880562!11901-125F2;0.606581!11902-125F3;0.511431!11903-125F4;0.673569!10689-109F5;0.281284!10648-109A9;0.0107012!10784-110H1;0.0281335!10744-110C6;0.240809!10772-110F7;0.437462!10474-106I6;0.00700805!10600-108E6;0.0767043!10684-109E9;1.77959e-05!12226-129F3;4.84453e-05!12227-129F4;0.00390804!10508-107D4;0.104013!10539-107G8;0.152565!10607-108F4;0.0294589!10555-107I6;0.104847!10774-110F9;0.107725!10637-108I7;0.392679!10663-109C6;0.104475!10728-110A8;0.501812!10729-110A9;0.105509!10430-106D7;0.00972825!10730-110B1;0.623066!10813-111B3;0.194347!10812-111B2;0.00284005!10037-101F1;0.379945!10172-103C1;0.822021!10163-103B1;0.956244!10076-102A4;0.499387!10073-102A1;0.712263!10036-101E9;0.416992!10195-103E6;0.843691!10277-104E7;0.752929!10434-106E2;0.875705!10550-107I1;0.0410077!10545-107H5;0.00877396!10544-107H4;0.318782!10704-109H2;0.126196!10510-107D6;0.000549586!10558-107I9;0.0937639!10020-101D2;0.0178607!10732-110B3;0.534768!10049-101G4;0.00221497!10698-109G5;0.401534!10437-106E5;0.330493!10417-106C3;0.0166645!10035-101E8;0.921904!10171-103B9;0.941337!10157-103A4;0.798721!10034-101E7;0.591136!10072-101I9;0.896126!10199-103F1;0.331678!10200-103F2;8.10809e-05!10697-109G4;0.694786!10723-110A3;0.0838886!10179-103C8;0.340428!10160-103A7;0.999268!10180-103C9;0.621472!10162-103A9;0.207405!10021-101D3;0.136704!10840-111E3;0.407889!10706-109H4;0.0916152!10033-101E6;0.0624734!10032-101E5;0.648509!10490-107B4;0.872084!10439-106E7;0.000304896!10022-101D4;0.0262324!10176-103C5;0.025818!10469-106I1;0.832679!10067-101I4;0.449264!10411-106B6;0.436201!10471-106I3;0.00473671!10030-101E3;0.0416379!10475-106I7;0.315633!10787-110H4;0.212642!10477-106I9;0.093186!10695-109G2;0.00237417!11771-123I7;0.0687772!11772-123I8;0.0004054!11773-123I9;0.000167432!10093-102C3;0.0258598!10442-106F1;0.0285789!10442-106F1;0.0390575!10201-103F3;0.0454701!10639-108I9;0.557248!11843-124H7;0.0189127!11841-124H5;0.182593!10693-109F9;0.170585!10436-106E4;0.199198!10483-107A6;0.397637!10282-104F3;0.331309!10023-101D5;0.958122!10066-101I3;0.915374!10065-101I2;0.731363!10800-110I8;0.991244!10610-108F7;0.0772874!10841-111E4;0.157297!10541-107H1;0.00606786!10842-111E5;0.0252326!10562-108A4;0.149817!10024-101D6;0.572642!10064-101I1;0.00172658!10609-108F6;0.142959!10048-101G3;0.547037!10781-110G7;0.417034!10181-103D1;0.149966!10159-103A6;0.278655!10056-101H2;0.312824!10737-110B8;0.966269!10025-101D7;0.00241474!10044-101F8;9.6807e-06!10424-106D1;0.00204655!10463-106H4;0.286477!10616-108G4;0.190123!10486-107A9;0.117022!10062-101H8;0.18241!10202-103F4;0.206558!10158-103A5;0.000292712!10441-106E9;0.175774!10031-101E4;0.097242!10063-101H9;0.701585!10063-101H9;0.292026!11763-123H8;0.0441121!11765-123I1;5.04785e-05!11768-123I4;0.000493828!10807-111A6;0.00376195!10790-110H7;0.141516!10798-110I6;0.346189!10786-110H3;0.0362027!10591-108D6;0.362412!10593-108D8;0.272149!10590-108D5;0.232441!10026-101D8;0.186935!10096-102C6;0.677608!10168-103B6;0.0570161!10154-103A1;0.820472!10209-103G2;0.312629!10061-101H7;0.521572!10027-101D9;0.776113!10043-101F7;0.00415139!10783-110G9;0.0163501!10028-101E1;0.0512871!10060-101H6;0.204055!10203-103F5;0.63603!10059-101H5;0.707375!10047-101G2;0.696313!10029-101E2;0.00159532!10058-101H4;0.0140167!10418-106C4;0.897332!10492-107B6;0.112765!10694-109G1;0.00624231!10797-110I5;0.00733475!10057-101H3;0.583134!10100-102D1;0.551793!10055-101H1;0.267145!10204-103F6;0.591555!10191-103E2;0.00633497!10563-108A5;0.000603014
|name=CNhs11828_bu_f2
|name=CNhs11828_bu_f2
|tomtom_result=AZF1#MA0277.1;-1;3.41176e-06;0.001624;0.00324717;9;CTTTCTTTTTT;TTTCTTTTT;-!Klf4#MA0039.1;1;0.00113734;0.541372;0.541235;9;CTTTCTTTTTT;CCTTCCTTTA;-!squamosa#MA0082.1;0;0.00225537;1.07355;0.624316;11;CTTTCTTTTTT;ATTTCCATTTTTGG;-!FKH1#MA0296.1;0;0.00262384;1.24895;0.624316;11;CTTTCTTTTTT;TCCTCTTTGTTTACAATTCA;-!id1#MA0120.1;0;0.00379474;1.8063;0.722336;11;CTTTCTTTTTT;TTTTCCTTTTCG;+!hb#MA0049.1;-2;0.00509473;2.42509;0.766752;9;CTTTCTTTTTT;TTTTTTATGC;-!HMG-I/Y#MA0045.1;4;0.00563931;2.68431;0.766752;11;CTTTCTTTTTT;GTTTTTCCATTTGTTG;-!IRF1#MA0050.1;1;0.0083884;3.99288;0.888406;11;CTTTCTTTTTT;GGTTTCACTTTC;-!br_Z4#MA0013.1;-1;0.00840093;3.99884;0.888406;10;CTTTCTTTTTT;TTTGTTTACTA;-!Foxd3#MA0041.1;0;0.0136101;6.4784;0.999747;11;CTTTCTTTTTT;GAATGTTTGTTT;+!br_Z1#MA0010.1;1;0.0167791;7.98686;0.999747;11;CTTTCTTTTTT;GATTTGTCTATTAC;-!D#MA00445.1;-2;0.020833;9.9165;0.999747;9;CTTTCTTTTTT;TCCATTGTTCT;+
}}
}}

Latest revision as of 14:15, 7 September 2012

Full Name: CNhs11828_bu_f2

Motif matrix
POACGT
10.0113.072664200017090.072.17352305907278
20.00.29200443823074360.0184.95418282085905
30.446656279351931535.78474803512273326.152756466394376152.8620264782207
40.029.2929073841127847.598036722086112148.3552431528909
50.0150.52517988235070.034.7210073767392
60.00.00.0185.2461872590898
70.037.7424642765133512.685621554538109134.8181014280384
80.01.38512974115766933.468891988730164150.392165529202
92.34944650998993952.443606984436441685.0611264798144295.39200728484906
100.042.934262648791663.3296216375955527138.98230297270268
112.9051514422064674.0361595913896623.606119395756743154.69875682973694

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

AZF1#MA0277.1-13.41176e-060.0016240.003247179CTTTCTTTTTTTTTCTTTTT-
Klf4#MA0039.110.001137340.5413720.5412359CTTTCTTTTTTCCTTCCTTTA-
squamosa#MA0082.100.002255371.073550.62431611CTTTCTTTTTTATTTCCATTTTTGG-
FKH1#MA0296.100.002623841.248950.62431611CTTTCTTTTTTTCCTCTTTGTTTACAATTCA-
id1#MA0120.100.003794741.80630.72233611CTTTCTTTTTTTTTTCCTTTTCG+
hb#MA0049.1-20.005094732.425090.7667529CTTTCTTTTTTTTTTTTATGC-
HMG-I/Y#MA0045.140.005639312.684310.76675211CTTTCTTTTTTGTTTTTCCATTTGTTG-
IRF1#MA0050.110.00838843.992880.88840611CTTTCTTTTTTGGTTTCACTTTC-
br_Z4#MA0013.1-10.008400933.998840.88840610CTTTCTTTTTTTTTGTTTACTA-
Foxd3#MA0041.100.01361016.47840.99974711CTTTCTTTTTTGAATGTTTGTTT+
br_Z1#MA0010.110.01677917.986860.99974711CTTTCTTTTTTGATTTGTCTATTAC-
D#MA00445.1-20.0208339.91650.9997479CTTTCTTTTTTTCCATTGTTCT+