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MacroAPE 1083:10-TCTATGAC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.496;0.496;0.496;494.512!2;33.728;300.08;55.552;106.64!3;101.68;0.496;0.496;393.328!4;399.776;0.496;95.232;0.496!5;0.496;196.416;0.496;298....")
 
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111C9;0.695448!10788-110H5;0.253791!10792-110H9;0.39208!10765-110E9;0.298012!10829-111D1;0.721146!10830-111D2;0.402193!10831-111D3;0.518404!10832-111D4;0.396939!10833-111D5;0.698211!10764-110E8;0.454465!10770-110F5;0.487204!10399-106A3;0.369647!10400-106A4;0.985998!10405-106A9;0.916517!10834-111D6;0.945763!10835-111D7;0.451477!10836-111D8;0.327478!10837-111D9;0.514783!10699-109G6;0.84257!10802-111A1;0.354545!10796-110I4;0.750357!10010-101C1;0.795759!10810-111A9;0.986478!10421-106C7;0.317954!10708-109H6;0.281365!12235-129G3;0.728961!12236-129G4;0.725208!12237-129G5;0.753057!10167-103B5;0.440185!10151-102I7;0.657486!10428-106D5;0.54026!10795-110I3;0.820245!10805-111A4;0.502579!10052-101G7;0.603045!10189-103D9;0.365422!10589-108D4;0.237468!10425-106D2;0.478615!10427-106D4;0.677517!10702-109G9;0.398613!10432-106D9;0.945717!10496-107C1;0.493814!10718-109I7;0.762802!10011-101C2;0.77133!10053-101G8;0.298434!10686-109F2;0.330183!10084-102B3;0.041607!10012-101C3;0.407342!10085-102B4;0.37291!10482-107A5;0.453492!10419-106C5;0.210338!10080-102A8;0.833831!10760-110E4;0.212842!10709-109H7;0.627417!10710-109H8;0.648708!10703-109H1;0.895078!10719-109I8;0.68613!10642-109A3;0.913677!10177-103C6;0.0076141!10164-103B2;0.50212!10173-103C2;0.476474!10166-103B4;0.616374!10083-102B2;0.472816!10188-103D8;0.330912!10552-107I3;0.248309!10553-107I4;0.379923!10013-101C4;0.620991!10536-107G5;0.193073!10618-108G6;0.206234!10423-106C9;0.460774!10785-110H2;0.632905!12238-129G6;0.678338!12239-129G7;0.964838!12240-129G8;0.555475!10416-106C2;0.652731!10801-110I9;0.398663!10766-110F1;0.41841!10824-111C5;0.957585!10825-111C6;0.795139!10826-111C7;0.944105!10454-106G4;0.924498!10409-106B4;0.80341!10638-108I8;0.936051!10636-108I6;0.664167!10513-107D9;0.846123!10420-106C6;0.734791!10082-102B1;0.794561!10014-101C5;0.0410239!10070-101I7;0.129947!10452-106G2;0.0783714!10453-106G3;0.477017!10449-106F8;0.789901!10042-101F6;0.788268!10069-101I6;0.424709!10193-103E4;0.95648!10631-108I1;0.315924!10438-106E6;0.699025!10488-107B2;0.756787!10196-103E7;0.853574!10071-101I8;0.421842!10071-101I8;0.162524!10041-101F5;0.776695!10451-106G1;0.794106!10450-106F9;0.758106!10604-108F1;0.803664!10605-108F2;0.608736!10606-108F3;0.745663!10603-108E9;0.880735!10497-107C2;0.639418!10448-106F7;0.866374!10643-109A4;0.776621!10426-106D3;0.452982!10431-106D8;0.750094!10197-103E8;0.614313!10443-106F2;0.709539!10815-111B5;0.727689!10816-111B6;0.522962!10817-111B7;0.52054!10015-101C6;0.487082!10410-106B5;0.215063!10054-101G9;0.37174!10758-110E2;0.0790585!10711-109H9;0.30052!10040-101F4;0.572649!10470-106I2;0.456061!10415-106C1;0.410165!10198-103E9;0.350041!10614-108G2;0.452816!10612-108F9;0.233248!10549-107H9;0.976046!10615-108G3;0.82173!10487-107B1;0.986569!10433-106E1;0.351532!10688-109F4;0.350069!10444-106F3;0.923982!10444-106F3;0.240933!10485-107A8;0.255012!10413-106B8;0.511592!10175-103C4;0.054057!10161-103A8;0.522515!12131-128D7;0.572378!10624-108H3;0.315095!10712-109I1;0.159372!10205-103F7;0.615672!10206-103F8;0.834721!10207-103F9;0.474649!10050-101G5;0.186575!10051-101G6;0.546587!10016-101C7;0.201898!10046-101G1;0.246927!10778-110G4;0.956834!10633-108I3;0.647501!10818-111B8;0.525974!10819-111B9;0.909484!10820-111C1;0.843194!10484-107A7;0.849624!10808-111A7;0.245835!10169-103B7;0.712364!10153-102I9;0.668505!13425-144D5;0.484572!13433-144E4;0.182771!13437-144E8;0.200183!11904-125F5;0.341572!11905-125F6;0.531315!10039-101F3;0.826806!10791-110H8;0.416625!10017-101C8;0.675699!10045-101F9;0.289197!10509-107D5;0.173797!10839-111E2;0.669972!10692-109F8;0.61719!10079-102A7;0.190311!10078-102A6;0.912909!10721-110A1;0.234445!10569-108B2;0.871156!10570-108B3;0.860263!10571-108B4;0.731059!10647-109A8;0.430362!10752-110D5;0.311747!10782-110G8;0.742602!10726-110A6;0.208608!10018-101C9;0.385736!10086-102B5;0.620805!10182-103D2;0.53761!10165-103B3;0.385129!10499-107C4;0.482835!10408-106B3;0.63353!10019-101D1;0.114504!10068-101I5;0.461756!10075-102A3;0.451318!10077-102A5;0.623794!10727-110A7;0.759068!10775-110G1;0.482905!10412-106B7;0.58767!12231-129F8;0.408378!12232-129F9;0.990072!12233-129G1;0.96775!12234-129G2;0.89845!10414-106B9;0.997001!10170-103B8;0.73355!10183-103D3;0.758742!10150-102I6;0.598816!10174-103C3;0.487858!10155-103A2;0.375715!10038-101F2;0.340906!10838-111E1;0.307601!10759-110E3;0.810484!10514-107E1;0.353187!10465-106H6;0.740775!10691-109F7;0.839852!10843-111E6;0.339955!10844-111E7;0.732022!11747-123G1;0.792736!11748-123G2;0.683088!11749-123G3;0.691762!11750-123G4;0.906239!11751-123G5;0.850903!11840-124H4;0.60075!11752-123G6;0.98732!11753-123G7;0.987548!11754-123G8;0.848629!11755-123G9;0.97608!11756-123H1;0.839808!11833-124G6;0.990143!11760-123H5;0.723066!11836-124G9;0.657917!11758-123H3;0.641358!11835-124G8;0.753467!11762-123H7;0.941023!11838-124H2;0.374286!11757-123H2;0.456636!11759-123H4;0.961869!11761-123H6;0.818817!11842-124H6;0.632816!11837-124H1;0.842174!10568-108B1;0.889427!13230-141I8;0.635726!13231-141I9;0.602449!10696-109G3;0.541345!10493-107B7;0.23992!10494-107B8;0.97182!10850-111F4;0.25584!10851-111F5;0.647056!10852-111F6;0.817756!10853-111F7;0.3996!10854-111F8;0.307556!10855-111F9;0.660864!10856-111G1;0.493035!10847-111F1;0.339463!10846-111E9;0.522717!10848-111F2;0.430345!10845-111E8;0.734795!10857-111G2;0.973256!10858-111G3;0.59615!10156-103A3;0.608571!11901-125F2;0.58681!11902-125F3;0.182348!11903-125F4;0.154496!10689-109F5;0.290007!10648-109A9;0.889166!10784-110H1;0.12935!10744-110C6;0.940933!10772-110F7;0.813961!10474-106I6;0.565514!10600-108E6;0.72173!10684-109E9;0.174241!12226-129F3;0.303293!12227-129F4;0.841865!10508-107D4;0.395066!10539-107G8;0.680953!10607-108F4;0.65869!10555-107I6;0.636704!10774-110F9;0.984006!10637-108I7;0.581866!10663-109C6;0.621143!10728-110A8;0.753574!10729-110A9;0.701514!10430-106D7;0.56547!10730-110B1;0.257016!10813-111B3;0.637524!10812-111B2;0.787617!10037-101F1;0.451323!10172-103C1;0.497426!10163-103B1;0.613692!10076-102A4;0.595748!10073-102A1;0.407593!10036-101E9;0.747674!10195-103E6;0.384465!10277-104E7;0.410333!10434-106E2;0.692198!10550-107I1;0.602988!10545-107H5;0.951134!10544-107H4;0.766028!10704-109H2;0.810445!10510-107D6;0.105451!10558-107I9;0.260825!10020-101D2;0.220396!10732-110B3;0.705521!10049-101G4;0.548788!10698-109G5;0.432278!10437-106E5;0.633259!10417-106C3;0.736361!10035-101E8;0.711182!10171-103B9;0.477258!10157-103A4;0.788088!10034-101E7;0.637137!10072-101I9;0.486044!10199-103F1;0.889065!10200-103F2;0.504532!10697-109G4;0.941626!10723-110A3;0.341983!10179-103C8;0.0253787!10160-103A7;0.836867!10180-103C9;0.754883!10162-103A9;0.811769!10021-101D3;0.791684!10840-111E3;0.378531!10706-109H4;0.401349!10033-101E6;0.15323!10032-101E5;0.545014!10490-107B4;0.446819!10439-106E7;0.745246!10022-101D4;0.636492!10176-103C5;0.161098!10469-106I1;0.62782!10067-101I4;0.245815!10411-106B6;0.0815481!10471-106I3;0.714321!10030-101E3;0.625511!10475-106I7;0.124946!10787-110H4;0.883762!10477-106I9;0.579806!10695-109G2;0.383271!11771-123I7;0.436461!11772-123I8;0.654732!11773-123I9;0.342812!10093-102C3;0.179045!10442-106F1;0.748907!10442-106F1;0.773719!10201-103F3;0.595688!10639-108I9;0.524486!11843-124H7;0.767776!11841-124H5;0.397597!10693-109F9;0.183476!10436-106E4;0.485318!10483-107A6;0.44906!10282-104F3;0.823851!10023-101D5;0.115762!10066-101I3;0.389486!10065-101I2;0.70029!10800-110I8;0.238714!10610-108F7;0.897583!10841-111E4;0.625422!10541-107H1;0.674095!10842-111E5;0.407537!10562-108A4;0.909892!10024-101D6;0.407709!10064-101I1;0.301668!10609-108F6;0.0289637!10048-101G3;0.745659!10781-110G7;0.572105!10181-103D1;0.638901!10159-103A6;0.393934!10056-101H2;0.407502!10737-110B8;0.223571!10025-101D7;0.648261!10044-101F8;0.579434!10424-106D1;0.6099!10463-106H4;0.361085!10616-108G4;0.319568!10486-107A9;0.71364!10062-101H8;0.849175!10202-103F4;0.0848387!10158-103A5;0.817332!10441-106E9;0.615055!10031-101E4;0.344791!10063-101H9;0.3615!10063-101H9;0.822169!11763-123H8;0.286113!11765-123I1;0.988439!11768-123I4;0.728916!10807-111A6;0.691986!10790-110H7;0.683516!10798-110I6;0.688675!10786-110H3;0.0683012!10591-108D6;0.451457!10593-108D8;0.934307!10590-108D5;0.411591!10026-101D8;0.972856!10096-102C6;0.300706!10168-103B6;0.0100259!10154-103A1;0.449013!10209-103G2;0.490465!10061-101H7;0.858688!10027-101D9;0.505096!10043-101F7;0.419806!10783-110G9;0.544592!10028-101E1;0.346566!10060-101H6;0.751573!10203-103F5;0.768892!10059-101H5;0.880449!10047-101G2;0.849095!10029-101E2;0.386815!10058-101H4;0.318054!10418-106C4;0.350196!10492-107B6;0.0400533!10694-109G1;0.647853!10797-110I5;0.258029!10057-101H3;0.952311!10100-102D1;0.70085!10055-101H1;0.126896!10204-103F6;0.0493297!10191-103E2;0.223433!10563-108A5;0.956819
|name=10-TCTATGAC,CNhs10632,BestGuess:MAFG_si_HM09(0.722940260759648),T:496.0(9.31%),B:2315.3(5.37%),P:1e-30
|name=10-TCTATGAC,CNhs10632,BestGuess:MAFG_si_HM09(0.722940260759648),T:496.0(9.31%),B:2315.3(5.37%),P:1e-30
|tomtom_result=Abd-B#MA0165.1;0;0.00226826;1.07969;0.917063;7;TCTATGAC;TTTATGA;+!br_Z1#MA0010.1;6;0.00281123;1.33815;0.917063;8;TCTATGAC;GATTTGTCTATTAC;-!NFE2L1::MafG#MA0089.1;-2;0.00288991;1.37559;0.917063;6;TCTATGAC;CATGAC;+!RXRA::VDR#MA0074.1;5;0.00494768;2.3551;1;8;TCTATGAC;TGAACCCGATGACCC;-!RXR::RAR_DR5#MA0159.1;7;0.00985176;4.68944;1;8;TCTATGAC;TGACCTCTCCGTGACCT;-!CG42234#MA0174.1;0;0.00993676;4.7299;1;7;TCTATGAC;TTTATTA;+!UPC2#MA0411.1;0;0.0159753;7.60426;1;7;TCTATGAC;TATACGA;+!GCN4#MA0303.1;3;0.0199866;9.51363;1;8;TCTATGAC;TGAAGTATGACTCATCCCTTG;-
}}
}}

Latest revision as of 14:18, 7 September 2012

Full Name: 10-TCTATGAC,CNhs10632,BestGuess:MAFG_si_HM09(0.722940260759648),T:496.0(9.31%),B:2315.3(5.37%),P:1e-30

Motif matrix
POACGT
10.4960.4960.496494.512
233.728300.0855.552106.64
3101.680.4960.496393.328
4399.7760.49695.2320.496
50.496196.4160.496298.592
60.4960.496494.5120.496
7428.04866.960.4960.496
80.496407.2160.49687.792

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Abd-B#MA0165.100.002268261.079690.9170637TCTATGACTTTATGA+
br_Z1#MA0010.160.002811231.338150.9170638TCTATGACGATTTGTCTATTAC-
NFE2L1::MafG#MA0089.1-20.002889911.375590.9170636TCTATGACCATGAC+
RXRA::VDR#MA0074.150.004947682.355118TCTATGACTGAACCCGATGACCC-
RXR::RAR_DR5#MA0159.170.009851764.6894418TCTATGACTGACCTCTCCGTGACCT-
CG42234#MA0174.100.009936764.729917TCTATGACTTTATTA+
UPC2#MA0411.100.01597537.6042617TCTATGACTATACGA+
GCN4#MA0303.130.01998669.5136318TCTATGACTGAAGTATGACTCATCCCTTG-
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