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MacroAPE 1083:6-CTGATYACA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;37.474;798.836;76.776;0.914!2;207.478;0.914;22.85;682.758!3;0.914;0.914;893.892;18.28!4;593.186;15.538;40.216;265.06!5;0.914;0.914;247.694;6...")
 
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828-111C9;0.0833991!10788-110H5;0.296555!10792-110H9;0.0518386!10765-110E9;0.0118513!10829-111D1;0.0823895!10830-111D2;0.0427164!10831-111D3;0.0328855!10832-111D4;0.204191!10833-111D5;0.151174!10764-110E8;0.0946941!10770-110F5;0.113447!10399-106A3;0.0591065!10400-106A4;0.0820483!10405-106A9;0.100547!10834-111D6;0.128779!10835-111D7;0.0422297!10836-111D8;0.192983!10837-111D9;0.164331!10699-109G6;0.0758012!10802-111A1;0.33242!10796-110I4;0.0698726!10010-101C1;0.129066!10810-111A9;0.073173!10421-106C7;0.00281976!10708-109H6;0.691699!12235-129G3;0.12371!12236-129G4;0.55495!12237-129G5;0.0655326!10167-103B5;0.210878!10151-102I7;0.354282!10428-106D5;0.256619!10795-110I3;0.853272!10805-111A4;0.0389864!10052-101G7;0.0133678!10189-103D9;0.005751!10589-108D4;0.43573!10425-106D2;0.990936!10427-106D4;0.363398!10702-109G9;0.0625261!10432-106D9;0.727778!10496-107C1;0.529456!10718-109I7;0.289033!10011-101C2;0.339234!10053-101G8;0.0950948!10686-109F2;0.446974!10084-102B3;0.290163!10012-101C3;0.460514!10085-102B4;0.260211!10482-107A5;0.4484!10419-106C5;0.694917!10080-102A8;0.239919!10760-110E4;0.0760242!10709-109H7;0.0673381!10710-109H8;0.202829!10703-109H1;0.0411514!10719-109I8;0.0235822!10642-109A3;0.694662!10177-103C6;0.0431851!10164-103B2;0.256186!10173-103C2;0.331351!10166-103B4;0.42461!10083-102B2;0.354649!10188-103D8;0.39071!10552-107I3;0.193706!10553-107I4;0.0646779!10013-101C4;0.705907!10536-107G5;0.058921!10618-108G6;0.147111!10423-106C9;0.282482!10785-110H2;0.766813!12238-129G6;0.152711!12239-129G7;0.425081!12240-129G8;0.764932!10416-106C2;0.564569!10801-110I9;0.287541!10766-110F1;0.25947!10824-111C5;0.0338402!10825-111C6;0.0499197!10826-111C7;0.0466168!10454-106G4;0.0530307!10409-106B4;0.100319!10638-108I8;0.0910519!10636-108I6;0.272744!10513-107D9;0.210825!10420-106C6;0.424645!10082-102B1;0.0111915!10014-101C5;0.124!10070-101I7;0.211307!10452-106G2;0.293431!10453-106G3;0.52764!10449-106F8;0.203389!10042-101F6;0.218445!10069-101I6;0.196008!10193-103E4;0.02507!10631-108I1;0.289827!10438-106E6;0.188055!10488-107B2;0.67312!10196-103E7;0.0147598!10071-101I8;0.174116!10071-101I8;0.0609455!10041-101F5;0.389776!10451-106G1;0.0230611!10450-106F9;0.0432087!10604-108F1;0.0533031!10605-108F2;0.0306299!10606-108F3;0.00322619!10603-108E9;0.0215944!10497-107C2;0.0141525!10448-106F7;0.0308848!10643-109A4;0.0218451!10426-106D3;0.0677744!10431-106D8;0.673226!10197-103E8;0.453396!10443-106F2;0.0399388!10815-111B5;0.751999!10816-111B6;0.112415!10817-111B7;0.142403!10015-101C6;0.0926719!10410-106B5;0.0151474!10054-101G9;0.477061!10758-110E2;0.106692!10711-109H9;0.920011!10040-101F4;0.236286!10470-106I2;0.308661!10415-106C1;0.0913017!10198-103E9;0.936088!10614-108G2;0.0223765!10612-108F9;0.442513!10549-107H9;0.0999829!10615-108G3;0.263852!10487-107B1;0.773446!10433-106E1;0.143212!10688-109F4;0.132177!10444-106F3;0.300232!10444-106F3;0.225847!10485-107A8;0.358246!10413-106B8;0.860806!10175-103C4;0.115407!10161-103A8;0.233363!12131-128D7;0.152734!10624-108H3;0.214744!10712-109I1;0.812039!10205-103F7;0.403433!10206-103F8;0.201962!10207-103F9;0.0563624!10050-101G5;0.406115!10051-101G6;0.00728448!10016-101C7;0.00554676!10046-101G1;0.0320668!10778-110G4;0.0441794!10633-108I3;0.953421!10818-111B8;0.917744!10819-111B9;0.0814323!10820-111C1;0.0795567!10484-107A7;0.100556!10808-111A7;0.382769!10169-103B7;0.293955!10153-102I9;0.300264!13425-144D5;0.272625!13433-144E4;0.257273!13437-144E8;0.48068!11904-125F5;0.359038!11905-125F6;0.309355!10039-101F3;0.521085!10791-110H8;0.346013!10017-101C8;0.328435!10045-101F9;0.152972!10509-107D5;0.128429!10839-111E2;0.349031!10692-109F8;0.0446078!10079-102A7;0.724071!10078-102A6;0.0727664!10721-110A1;0.044157!10569-108B2;0.0287274!10570-108B3;0.457301!10571-108B4;0.546585!10647-109A8;0.856605!10752-110D5;0.249177!10782-110G8;0.050773!10726-110A6;0.688713!10018-101C9;0.301921!10086-102B5;0.24764!10182-103D2;0.667925!10165-103B3;0.25801!10499-107C4;0.216675!10408-106B3;0.00648608!10019-101D1;0.591748!10068-101I5;0.00693574!10075-102A3;0.0221938!10077-102A5;0.0463388!10727-110A7;0.391188!10775-110G1;0.525413!10412-106B7;0.0401336!12231-129F8;0.487328!12232-129F9;0.769893!12233-129G1;0.637199!12234-129G2;0.7691!10414-106B9;0.848156!10170-103B8;0.832094!10183-103D3;0.449663!10150-102I6;0.402445!10174-103C3;0.284245!10155-103A2;0.12158!10038-101F2;0.158971!10838-111E1;0.154626!10759-110E3;0.481634!10514-107E1;0.352375!10465-106H6;0.933214!10691-109F7;0.43706!10843-111E6;0.443731!10844-111E7;0.0687339!11747-123G1;0.966887!11748-123G2;0.858849!11749-123G3;0.82268!11750-123G4;0.597108!11751-123G5;0.222314!11840-124H4;0.390202!11752-123G6;0.50748!11753-123G7;0.500442!11754-123G8;0.310887!11755-123G9;0.79944!11756-123H1;0.811286!11833-124G6;0.888091!11760-123H5;0.673032!11836-124G9;0.958664!11758-123H3;0.727579!11835-124G8;0.83352!11762-123H7;0.486086!11838-124H2;0.394969!11757-123H2;0.961636!11759-123H4;0.643643!11761-123H6;0.772961!11842-124H6;0.694622!11837-124H1;0.342472!10568-108B1;0.882623!13230-141I8;0.536494!13231-141I9;0.22618!10696-109G3;0.320884!10493-107B7;0.40502!10494-107B8;0.153718!10850-111F4;0.304873!10851-111F5;0.246259!10852-111F6;0.22844!10853-111F7;0.795907!10854-111F8;0.163972!10855-111F9;0.693301!10856-111G1;0.64911!10847-111F1;0.0768141!10846-111E9;0.894749!10848-111F2;0.200001!10845-111E8;0.205118!10857-111G2;0.0620682!10858-111G3;0.117306!10156-103A3;0.148977!11901-125F2;0.268776!11902-125F3;0.206958!11903-125F4;0.0355589!10689-109F5;0.0910314!10648-109A9;0.0015597!10784-110H1;0.810153!10744-110C6;0.503575!10772-110F7;0.293003!10474-106I6;0.140361!10600-108E6;0.184841!10684-109E9;0.163009!12226-129F3;0.245465!12227-129F4;0.921866!10508-107D4;0.01425!10539-107G8;0.6449!10607-108F4;0.572518!10555-107I6;0.233464!10774-110F9;0.324007!10637-108I7;0.118942!10663-109C6;0.803301!10728-110A8;0.65142!10729-110A9;0.0796883!10430-106D7;0.367333!10730-110B1;0.149915!10813-111B3;0.393896!10812-111B2;0.749888!10037-101F1;0.0652145!10172-103C1;0.324598!10163-103B1;0.335257!10076-102A4;0.264093!10073-102A1;0.353435!10036-101E9;0.513376!10195-103E6;0.327945!10277-104E7;0.304359!10434-106E2;0.104655!10550-107I1;0.634319!10545-107H5;0.105494!10544-107H4;0.358303!10704-109H2;0.584116!10510-107D6;0.999248!10558-107I9;0.764701!10020-101D2;0.165161!10732-110B3;0.0897169!10049-101G4;0.70753!10698-109G5;0.0781066!10437-106E5;0.484668!10417-106C3;0.277888!10035-101E8;0.943244!10171-103B9;0.32797!10157-103A4;0.397856!10034-101E7;0.27732!10072-101I9;0.330442!10199-103F1;0.418349!10200-103F2;0.00216389!10697-109G4;0.0426299!10723-110A3;0.662812!10179-103C8;0.714039!10160-103A7;0.341202!10180-103C9;0.198596!10162-103A9;0.187017!10021-101D3;0.259657!10840-111E3;0.745454!10706-109H4;0.213457!10033-101E6;0.0746654!10032-101E5;0.260928!10490-107B4;0.35323!10439-106E7;0.0668643!10022-101D4;0.293656!10176-103C5;0.0770179!10469-106I1;0.470399!10067-101I4;0.537534!10411-106B6;0.375921!10471-106I3;0.104776!10030-101E3;0.130055!10475-106I7;0.134923!10787-110H4;0.0740918!10477-106I9;0.00729673!10695-109G2;0.659945!11771-123I7;0.876524!11772-123I8;0.515635!11773-123I9;0.851866!10093-102C3;0.456138!10442-106F1;0.112061!10442-106F1;0.491842!10201-103F3;0.318801!10639-108I9;0.168094!11843-124H7;0.451393!11841-124H5;0.127238!10693-109F9;0.0399917!10436-106E4;0.03551!10483-107A6;0.357132!10282-104F3;0.0669615!10023-101D5;0.0299667!10066-101I3;0.0576921!10065-101I2;0.21177!10800-110I8;0.16449!10610-108F7;0.412657!10841-111E4;0.710958!10541-107H1;0.0236159!10842-111E5;0.313935!10562-108A4;0.322374!10024-101D6;0.365361!10064-101I1;0.131705!10609-108F6;0.171257!10048-101G3;0.611141!10781-110G7;0.133882!10181-103D1;0.605178!10159-103A6;0.167234!10056-101H2;0.106042!10737-110B8;0.217726!10025-101D7;0.466317!10044-101F8;0.183277!10424-106D1;0.052167!10463-106H4;0.0334246!10616-108G4;0.134414!10486-107A9;0.996067!10062-101H8;0.587628!10202-103F4;0.131976!10158-103A5;0.0371101!10441-106E9;0.146418!10031-101E4;0.0290787!10063-101H9;0.32642!10063-101H9;0.482997!11763-123H8;0.0523699!11765-123I1;0.603821!11768-123I4;0.118428!10807-111A6;0.55864!10790-110H7;0.0188093!10798-110I6;0.041246!10786-110H3;0.00633578!10591-108D6;0.153672!10593-108D8;0.259677!10590-108D5;0.429966!10026-101D8;0.0888462!10096-102C6;0.0419784!10168-103B6;0.557004!10154-103A1;0.245849!10209-103G2;0.200237!10061-101H7;0.0135731!10027-101D9;0.00789123!10043-101F7;0.10993!10783-110G9;0.00619019!10028-101E1;0.707074!10060-101H6;0.000977107!10203-103F5;0.0190183!10059-101H5;0.0158368!10047-101G2;0.0440812!10029-101E2;0.0524928!10058-101H4;0.0134448!10418-106C4;0.017631!10492-107B6;0.379675!10694-109G1;0.300899!10797-110I5;0.968473!10057-101H3;0.0536062!10100-102D1;0.0370892!10055-101H1;0.0813147!10204-103F6;0.309456!10191-103E2;0.113633!10563-108A5;0.0327702
|name=6-CTGATYACA,CNhs10619,BestGuess:Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq/Homer(0.70948037213537),T:914.0(40.68%),B:14018.1(29.63%),P:1e-28
|name=6-CTGATYACA,CNhs10619,BestGuess:Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq/Homer(0.70948037213537),T:914.0(40.68%),B:14018.1(29.63%),P:1e-28
|tomtom_result=FOXO3#MA0157.1;-1;0.00109043;0.519045;1;8;CTGATTACA;TGTTTACA;-!FKH2#MA0297.1;-1;0.0115503;5.49793;1;7;CTGATTACA;TGTTTAC;-!FOXD1#MA0031.1;0;0.0120008;5.71237;1;8;CTGATTACA;ATGTTTAC;-!FOXA1#MA0148.1;0;0.012723;6.05617;1;9;CTGATTACA;CAAAGTAAACA;-!slp1#MA0458.1;0;0.0139586;6.6443;1;9;CTGATTACA;TTGTTTACATT;+!HMG-1#MA0044.1;-2;0.0150133;7.14634;1;7;CTGATTACA;GAATACAAC;-!YAP6#MA0418.1;3;0.0153028;7.28412;1;9;CTGATTACA;GGTCTGATTACGTAAGCGAC;+!Vsx2#MA0180.1;0;0.0188594;8.97707;1;9;CTGATTACA;CTAATTAAA;-
}}
}}

Latest revision as of 14:23, 7 September 2012

Full Name: 6-CTGATYACA,CNhs10619,BestGuess:Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq/Homer(0.70948037213537),T:914.0(40.68%),B:14018.1(29.63%),P:1e-28

Motif matrix
POACGT
137.474798.83676.7760.914
2207.4780.91422.85682.758
30.9140.914893.89218.28
4593.18615.53840.216265.06
50.9140.914247.694664.478
679.518314.41673.12446.032
7549.31474.034250.43640.216
8146.24523.722169.0974.948
9817.11684.08811.8820.914

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
FOXO3#MA0157.1-10.001090430.51904518CTGATTACATGTTTACA-
FKH2#MA0297.1-10.01155035.4979317CTGATTACATGTTTAC-
FOXD1#MA0031.100.01200085.7123718CTGATTACAATGTTTAC-
FOXA1#MA0148.100.0127236.0561719CTGATTACACAAAGTAAACA-
slp1#MA0458.100.01395866.644319CTGATTACATTGTTTACATT+
HMG-1#MA0044.1-20.01501337.1463417CTGATTACAGAATACAAC-
YAP6#MA0418.130.01530287.2841219CTGATTACAGGTCTGATTACGTAAGCGAC+
Vsx2#MA0180.100.01885948.9770719CTGATTACACTAATTAAA-
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