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MacroAPE 1083:Motif GATCTN: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;544;0!02;544;0;0;0!03;0;0;0;544!04;0;544;0;0!05;0;0;0;544!06;136;136;136;136 |macroape_1083_sample_pvalues=11376-118A8;0.592632!11327-...")
 
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28-111C9;0.985721!10788-110H5;0.884914!10792-110H9;0.542463!10765-110E9;0.782159!10829-111D1;0.307926!10830-111D2;0.875885!10831-111D3;0.780227!10832-111D4;0.564031!10833-111D5;0.400598!10764-110E8;0.420938!10770-110F5;0.783872!10399-106A3;0.524051!10400-106A4;0.104266!10405-106A9;0.0894974!10834-111D6;0.226609!10835-111D7;0.57773!10836-111D8;0.16058!10837-111D9;0.832356!10699-109G6;0.0677228!10802-111A1;0.614329!10796-110I4;0.289245!10010-101C1;0.0108999!10810-111A9;0.649878!10421-106C7;0.836436!10708-109H6;0.81469!12235-129G3;0.238484!12236-129G4;0.351938!12237-129G5;0.334387!10167-103B5;0.475691!10151-102I7;0.202994!10428-106D5;0.318554!10795-110I3;0.459202!10805-111A4;0.379478!10052-101G7;0.961468!10189-103D9;0.285142!10589-108D4;0.566957!10425-106D2;0.642934!10427-106D4;0.299166!10702-109G9;0.874863!10432-106D9;0.395801!10496-107C1;0.223542!10718-109I7;0.710286!10011-101C2;0.311483!10053-101G8;0.504595!10686-109F2;0.469915!10084-102B3;0.471565!10012-101C3;0.188224!10085-102B4;0.332199!10482-107A5;0.11637!10419-106C5;0.571201!10080-102A8;0.208248!10760-110E4;0.33513!10709-109H7;0.576104!10710-109H8;0.454916!10703-109H1;0.808919!10719-109I8;0.402672!10642-109A3;0.922096!10177-103C6;0.745158!10164-103B2;0.169817!10173-103C2;0.244364!10166-103B4;0.0940825!10083-102B2;0.1522!10188-103D8;0.165886!10552-107I3;0.181344!10553-107I4;0.927498!10013-101C4;0.786014!10536-107G5;0.863718!10618-108G6;0.689458!10423-106C9;0.201375!10785-110H2;0.582346!12238-129G6;0.334531!12239-129G7;0.467596!12240-129G8;0.928882!10416-106C2;0.88519!10801-110I9;0.773736!10766-110F1;0.313828!10824-111C5;0.133554!10825-111C6;0.416681!10826-111C7;0.320538!10454-106G4;0.362222!10409-106B4;0.130861!10638-108I8;0.049118!10636-108I6;0.567208!10513-107D9;0.936563!10420-106C6;0.744349!10082-102B1;0.569401!10014-101C5;0.619506!10070-101I7;0.815425!10452-106G2;0.554991!10453-106G3;0.926202!10449-106F8;0.481797!10042-101F6;0.527866!10069-101I6;0.26588!10193-103E4;0.74831!10631-108I1;0.231042!10438-106E6;0.442509!10488-107B2;0.873074!10196-103E7;0.645017!10071-101I8;0.227421!10071-101I8;0.767919!10041-101F5;0.2513!10451-106G1;0.636453!10450-106F9;0.579952!10604-108F1;0.997257!10605-108F2;0.922248!10606-108F3;0.52702!10603-108E9;0.980406!10497-107C2;0.849161!10448-106F7;0.46443!10643-109A4;0.899231!10426-106D3;0.806425!10431-106D8;0.168167!10197-103E8;0.623527!10443-106F2;0.703718!10815-111B5;0.237042!10816-111B6;0.603516!10817-111B7;0.862828!10015-101C6;0.694882!10410-106B5;0.547019!10054-101G9;0.640969!10758-110E2;0.224477!10711-109H9;0.524937!10040-101F4;0.702443!10470-106I2;0.230955!10415-106C1;0.884759!10198-103E9;0.187915!10614-108G2;0.709271!10612-108F9;0.866241!10549-107H9;0.668792!10615-108G3;0.762897!10487-107B1;0.381436!10433-106E1;0.725971!10688-109F4;0.810527!10444-106F3;0.673469!10444-106F3;0.217283!10485-107A8;0.139939!10413-106B8;0.329547!10175-103C4;0.444857!10161-103A8;0.197954!12131-128D7;0.345162!10624-108H3;0.896109!10712-109I1;0.697277!10205-103F7;0.639496!10206-103F8;0.693149!10207-103F9;0.545917!10050-101G5;0.612032!10051-101G6;0.325508!10016-101C7;0.403162!10046-101G1;0.422093!10778-110G4;0.340382!10633-108I3;0.943489!10818-111B8;0.399777!10819-111B9;0.743747!10820-111C1;0.77231!10484-107A7;0.687472!10808-111A7;0.994012!10169-103B7;0.745135!10153-102I9;0.287344!13425-144D5;0.337058!13433-144E4;0.85966!13437-144E8;0.710413!11904-125F5;0.787997!11905-125F6;0.935305!10039-101F3;0.862147!10791-110H8;0.219289!10017-101C8;0.601667!10045-101F9;0.868913!10509-107D5;0.188202!10839-111E2;0.432252!10692-109F8;0.0356411!10079-102A7;0.829077!10078-102A6;0.957763!10721-110A1;0.646123!10569-108B2;0.969119!10570-108B3;0.132384!10571-108B4;0.0479564!10647-109A8;0.212112!10752-110D5;0.988367!10782-110G8;0.0326269!10726-110A6;0.843609!10018-101C9;0.248197!10086-102B5;0.624235!10182-103D2;0.969856!10165-103B3;0.21435!10499-107C4;0.289757!10408-106B3;0.901852!10019-101D1;0.883525!10068-101I5;0.947337!10075-102A3;0.687959!10077-102A5;0.77615!10727-110A7;0.777198!10775-110G1;0.617826!10412-106B7;0.482934!12231-129F8;0.81376!12232-129F9;0.474987!12233-129G1;0.372514!12234-129G2;0.529306!10414-106B9;0.674418!10170-103B8;0.631736!10183-103D3;0.210037!10150-102I6;0.283033!10174-103C3;0.283704!10155-103A2;0.14979!10038-101F2;0.274376!10838-111E1;0.167301!10759-110E3;0.48766!10514-107E1;0.347059!10465-106H6;0.670203!10691-109F7;0.409898!10843-111E6;0.0310665!10844-111E7;0.932436!11747-123G1;0.311427!11748-123G2;0.0734434!11749-123G3;0.40401!11750-123G4;0.111312!11751-123G5;0.569557!11840-124H4;0.600414!11752-123G6;0.755797!11753-123G7;0.992605!11754-123G8;0.0875085!11755-123G9;0.149717!11756-123H1;0.621626!11833-124G6;0.62938!11760-123H5;0.277742!11836-124G9;0.730217!11758-123H3;0.121662!11835-124G8;0.406719!11762-123H7;0.614721!11838-124H2;0.163261!11757-123H2;0.193784!11759-123H4;0.750395!11761-123H6;0.850204!11842-124H6;0.486526!11837-124H1;0.664498!10568-108B1;0.330132!13230-141I8;0.995654!13231-141I9;0.626588!10696-109G3;0.504179!10493-107B7;0.306571!10494-107B8;0.406981!10850-111F4;0.216313!10851-111F5;0.780815!10852-111F6;0.0538681!10853-111F7;0.040419!10854-111F8;0.138915!10855-111F9;0.1579!10856-111G1;0.130838!10847-111F1;0.0120904!10846-111E9;0.593145!10848-111F2;0.143868!10845-111E8;0.167155!10857-111G2;0.374708!10858-111G3;0.510624!10156-103A3;0.378839!11901-125F2;0.286453!11902-125F3;0.227706!11903-125F4;0.466059!10689-109F5;0.260789!10648-109A9;0.449951!10784-110H1;0.977873!10744-110C6;0.679564!10772-110F7;0.170453!10474-106I6;0.476248!10600-108E6;0.0806943!10684-109E9;0.495722!12226-129F3;0.731211!12227-129F4;0.928802!10508-107D4;0.996238!10539-107G8;0.0163798!10607-108F4;0.249185!10555-107I6;0.445943!10774-110F9;0.0732885!10637-108I7;0.936571!10663-109C6;0.997937!10728-110A8;0.743424!10729-110A9;0.786773!10430-106D7;0.385323!10730-110B1;0.67125!10813-111B3;0.946109!10812-111B2;0.34549!10037-101F1;0.0465249!10172-103C1;0.193643!10163-103B1;0.151781!10076-102A4;0.276915!10073-102A1;0.289695!10036-101E9;0.268769!10195-103E6;0.151974!10277-104E7;0.235509!10434-106E2;0.186854!10550-107I1;0.561575!10545-107H5;0.855618!10544-107H4;0.395411!10704-109H2;0.21361!10510-107D6;0.74878!10558-107I9;0.477427!10020-101D2;0.940635!10732-110B3;0.686316!10049-101G4;0.348213!10698-109G5;0.419348!10437-106E5;0.819969!10417-106C3;0.712867!10035-101E8;0.627598!10171-103B9;0.180145!10157-103A4;0.248052!10034-101E7;0.279852!10072-101I9;0.185592!10199-103F1;0.276855!10200-103F2;0.297242!10697-109G4;0.65347!10723-110A3;0.754771!10179-103C8;0.915016!10160-103A7;0.154258!10180-103C9;0.305217!10162-103A9;0.0453318!10021-101D3;0.0974825!10840-111E3;0.783355!10706-109H4;0.577096!10033-101E6;0.421829!10032-101E5;0.228145!10490-107B4;0.156518!10439-106E7;0.451793!10022-101D4;0.292348!10176-103C5;0.489588!10469-106I1;0.184373!10067-101I4;0.998898!10411-106B6;0.352122!10471-106I3;0.53307!10030-101E3;0.615752!10475-106I7;0.227848!10787-110H4;0.555281!10477-106I9;0.268941!10695-109G2;0.715761!11771-123I7;0.124815!11772-123I8;0.976104!11773-123I9;0.340221!10093-102C3;0.108123!10442-106F1;0.333189!10442-106F1;0.91756!10201-103F3;0.759805!10639-108I9;0.410693!11843-124H7;0.891134!11841-124H5;0.985966!10693-109F9;0.951352!10436-106E4;0.436102!10483-107A6;0.720157!10282-104F3;0.546754!10023-101D5;0.772313!10066-101I3;0.792452!10065-101I2;0.671493!10800-110I8;0.543674!10610-108F7;0.243548!10841-111E4;0.319411!10541-107H1;0.435913!10842-111E5;0.926896!10562-108A4;0.236663!10024-101D6;0.132879!10064-101I1;0.931272!10609-108F6;0.678913!10048-101G3;0.39196!10781-110G7;0.568918!10181-103D1;0.487544!10159-103A6;0.239296!10056-101H2;0.352627!10737-110B8;0.184308!10025-101D7;0.792538!10044-101F8;0.980286!10424-106D1;0.688954!10463-106H4;0.830411!10616-108G4;0.949869!10486-107A9;0.688779!10062-101H8;0.625016!10202-103F4;0.152683!10158-103A5;0.604586!10441-106E9;0.415018!10031-101E4;0.580088!10063-101H9;0.197756!10063-101H9;0.253969!11763-123H8;0.727822!11765-123I1;0.729972!11768-123I4;0.87213!10807-111A6;0.671968!10790-110H7;0.882574!10798-110I6;0.922108!10786-110H3;0.87545!10591-108D6;0.654753!10593-108D8;0.786541!10590-108D5;0.493595!10026-101D8;0.826118!10096-102C6;0.307075!10168-103B6;0.101322!10154-103A1;0.237895!10209-103G2;0.316587!10061-101H7;0.673139!10027-101D9;0.475511!10043-101F7;0.38991!10783-110G9;0.212033!10028-101E1;0.762357!10060-101H6;0.554247!10203-103F5;0.348865!10059-101H5;0.774437!10047-101G2;0.593467!10029-101E2;0.594077!10058-101H4;0.564288!10418-106C4;0.389349!10492-107B6;0.81458!10694-109G1;0.316976!10797-110I5;0.476386!10057-101H3;0.136654!10100-102D1;0.536963!10055-101H1;0.546999!10204-103F6;0.540441!10191-103E2;0.275987!10563-108A5;0.519156
|name=motif_GATCTN
|name=motif_GATCTN
|tomtom_result=GAT4#MA0302.1;4;1.0467e-05;0.0049823;0.00990948;6;GATCTA;TTTAGATCTTT;-!ECM23#MA0293.1;4;3.57805e-05;0.0170315;0.0169373;6;GATCTA;TTTAGATCTTT;-!SRD1#MA0389.1;1;0.000111163;0.0529138;0.0323377;6;GATCTA;AGATCTAC;+!GAT3#MA0301.1;1;0.000335896;0.159886;0.0530006;6;GATCTA;AGATCTACA;+!YPR013C#MA0434.1;1;0.00251615;1.19769;0.264681;6;GATCTA;TGATCTACA;-!ARR10#MA0121.1;3;0.00438074;2.08523;0.41474;5;GATCTA;GCGGATCT;-!NR4A2#MA0160.1;2;0.0139168;6.62442;0.994468;6;GATCTA;GTGACCTT;-!HAP5#MA0316.1;3;0.0150547;7.16602;0.994468;6;GATCTA;TGGGATCTGATTGGT;+
}}
}}

Latest revision as of 14:38, 7 September 2012

Full Name: motif_GATCTN

Motif matrix
POACGT
01005440
02544000
03000544
04054400
05000544
06136136136136

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GAT4#MA0302.141.0467e-050.00498230.009909486GATCTATTTAGATCTTT-
ECM23#MA0293.143.57805e-050.01703150.01693736GATCTATTTAGATCTTT-
SRD1#MA0389.110.0001111630.05291380.03233776GATCTAAGATCTAC+
GAT3#MA0301.110.0003358960.1598860.05300066GATCTAAGATCTACA+
YPR013C#MA0434.110.002516151.197690.2646816GATCTATGATCTACA-
ARR10#MA0121.130.004380742.085230.414745GATCTAGCGGATCT-
NR4A2#MA0160.120.01391686.624420.9944686GATCTAGTGACCTT-
HAP5#MA0316.130.01505477.166020.9944686GATCTATGGGATCTGATTGGT+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:Motif_GATCTN&oldid=2134435"