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MacroAPE 1083:13-CGTCACAGGAAAC: Difference between revisions

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.0105441!12176-128I7;0.00318848!12177-128I8;0.0100788!12182-129A4;0.00465129!12183-129A5;0.00163931!12184-129A6;0.00231615!10809-111A8;0.0043257!10597-108E3;0.135227!10717-109I6;0.46095!10455-106G5;0.0749816!10534-107G3;0.412449!10429-106D6;0.899296!10464-106H5;0.396084!10827-111C8;0.550464!10789-110H6;0.336769!10828-111C9;0.147399!10788-110H5;0.0261108!10792-110H9;0.89381!10765-110E9;0.379246!10829-111D1;0.75724!10830-111D2;0.969044!10831-111D3;0.41289!10832-111D4;0.0728674!10833-111D5;0.810094!10764-110E8;0.810254!10770-110F5;0.992652!10399-106A3;0.289783!10400-106A4;0.711863!10405-106A9;0.621473!10834-111D6;0.789115!10835-111D7;0.295972!10836-111D8;0.367257!10837-111D9;0.793774!10699-109G6;0.342203!10802-111A1;0.0782752!10796-110I4;0.0633291!10010-101C1;0.487347!10810-111A9;0.402834!10421-106C7;0.254868!10708-109H6;0.16475!12235-129G3;0.381259!12236-129G4;0.537212!12237-129G5;0.404027!10167-103B5;0.937577!10151-102I7;0.511541!10428-106D5;0.513039!10795-110I3;0.742487!10805-111A4;0.705517!10052-101G7;0.0218685!10189-103D9;0.741283!10589-108D4;0.0814773!10425-106D2;0.00864777!10427-106D4;0.283325!10702-109G9;0.139126!10432-106D9;0.262959!10496-107C1;0.731096!10718-109I7;0.974578!10011-101C2;0.916787!10053-101G8;0.542089!10686-109F2;0.00164477!10084-102B3;0.617068!10012-101C3;0.410958!10085-102B4;0.525265!10482-107A5;0.18191!10419-106C5;0.385407!10080-102A8;0.225247!10760-110E4;0.700056!10709-109H7;0.00685487!10710-109H8;0.0526082!10703-109H1;0.209903!10719-109I8;0.000327627!10642-109A3;0.169526!10177-103C6;0.00112561!10164-103B2;0.694909!10173-103C2;0.453482!10166-103B4;0.216973!10083-102B2;0.249151!10188-103D8;0.178738!10552-107I3;0.646322!10553-107I4;0.313765!10013-101C4;0.116805!10536-107G5;0.961417!10618-108G6;0.438713!10423-106C9;0.178212!10785-110H2;0.361288!12238-129G6;0.0763868!12239-129G7;0.414219!12240-129G8;0.0393174!10416-106C2;0.353366!10801-110I9;0.408401!10766-110F1;0.133129!10824-111C5;0.190688!10825-111C6;0.919649!10826-111C7;0.836948!10454-106G4;0.741665!10409-106B4;0.251798!10638-108I8;0.103036!10636-108I6;0.435181!10513-107D9;0.101209!10420-106C6;0.0351039!10082-102B1;0.0111938!10014-101C5;0.930901!10070-101I7;0.969668!10452-106G2;0.997265!10453-106G3;0.868304!10449-106F8;0.477408!10042-101F6;0.402694!10069-101I6;0.698457!10193-103E4;0.89235!10631-108I1;0.469243!10438-106E6;0.923219!10488-107B2;0.364229!10196-103E7;0.648439!10071-101I8;0.853598!10071-101I8;0.852374!10041-101F5;0.147974!10451-106G1;0.502218!10450-106F9;0.152602!10604-108F1;0.0101838!10605-108F2;0.769666!10606-108F3;0.770626!10603-108E9;0.862179!10497-107C2;0.940804!10448-106F7;0.54257!10643-109A4;0.439226!10426-106D3;0.444718!10431-106D8;0.250971!10197-103E8;0.137923!10443-106F2;0.891317!10815-111B5;0.100549!10816-111B6;0.124236!10817-111B7;0.243702!10015-101C6;0.142556!10410-106B5;0.981004!10054-101G9;0.879703!10758-110E2;0.499589!10711-109H9;0.547168!10040-101F4;0.981979!10470-106I2;0.457973!10415-106C1;0.0877937!10198-103E9;0.436282!10614-108G2;0.317325!10612-108F9;0.0107149!10549-107H9;0.209569!10615-108G3;0.411699!10487-107B1;0.0583934!10433-106E1;0.465182!10688-109F4;0.195792!10444-106F3;0.273553!10444-106F3;0.0736476!10485-107A8;0.0366483!10413-106B8;0.0538422!10175-103C4;0.0649465!10161-103A8;0.76251!12131-128D7;0.773969!10624-108H3;0.276953!10712-109I1;0.259398!10205-103F7;0.286152!10206-103F8;0.546863!10207-103F9;0.751077!10050-101G5;0.077621!10051-101G6;0.967122!10016-101C7;0.633121!10046-101G1;0.613954!10778-110G4;0.658087!10633-108I3;0.67685!10818-111B8;0.0677893!10819-111B9;0.207967!10820-111C1;0.237339!10484-107A7;0.252448!10808-111A7;0.129574!10169-103B7;0.638136!10153-102I9;0.497525!13425-144D5;0.532186!13433-144E4;0.00219262!13437-144E8;0.00519081!11904-125F5;0.00523917!11905-125F6;0.0353648!10039-101F3;0.0757742!10791-110H8;0.427968!10017-101C8;0.0677491!10045-101F9;0.702174!10509-107D5;0.632789!10839-111E2;0.958439!10692-109F8;0.115912!10079-102A7;0.153507!10078-102A6;0.710156!10721-110A1;0.548063!10569-108B2;0.731938!10570-108B3;0.408941!10571-108B4;0.099338!10647-109A8;0.135726!10752-110D5;0.706429!10782-110G8;0.70152!10726-110A6;0.177594!10018-101C9;0.441942!10086-102B5;0.426674!10182-103D2;0.849878!10165-103B3;0.643212!10499-107C4;0.667418!10408-106B3;0.714781!10019-101D1;0.227916!10068-101I5;0.0233021!10075-102A3;0.211427!10077-102A5;0.0386588!10727-110A7;0.000739339!10775-110G1;0.0570803!10412-106B7;0.784528!12231-129F8;0.0202621!12232-129F9;0.524814!12233-129G1;0.359982!12234-129G2;0.512086!10414-106B9;0.779934!10170-103B8;0.0406496!10183-103D3;0.449838!10150-102I6;0.480775!10174-103C3;0.623805!10155-103A2;0.438693!10038-101F2;0.665258!10838-111E1;0.672912!10759-110E3;0.0417744!10514-107E1;0.198557!10465-106H6;0.639192!10691-109F7;0.913443!10843-111E6;0.454237!10844-111E7;0.00310228!11747-123G1;0.0065071!11748-123G2;0.41474!11749-123G3;0.581785!11750-123G4;0.570749!11751-123G5;0.58507!11840-124H4;0.390474!11752-123G6;0.0971089!11753-123G7;0.296641!11754-123G8;0.698452!11755-123G9;0.159158!11756-123H1;0.188382!11833-124G6;0.0733985!11760-123H5;0.395185!11836-124G9;0.362478!11758-123H3;0.961545!11835-124G8;0.804245!11762-123H7;0.507228!11838-124H2;0.411288!11757-123H2;0.503573!11759-123H4;0.910614!11761-123H6;0.119212!11842-124H6;0.0993247!11837-124H1;0.750453!10568-108B1;0.587051!13230-141I8;0.0304638!13231-141I9;0.0459953!10696-109G3;0.0225316!10493-107B7;0.974987!10494-107B8;0.562751!10850-111F4;0.331369!10851-111F5;0.160573!10852-111F6;0.088107!10853-111F7;0.00359275!10854-111F8;0.162325!10855-111F9;0.00792334!10856-111G1;0.933252!10847-111F1;0.0109038!10846-111E9;0.105733!10848-111F2;0.473459!10845-111E8;0.0233306!10857-111G2;0.0227653!10858-111G3;0.29823!10156-103A3;0.055743!11901-125F2;0.547807!11902-125F3;0.631358!11903-125F4;0.611997!10689-109F5;0.574377!10648-109A9;0.015145!10784-110H1;0.0527605!10744-110C6;0.700684!10772-110F7;0.00561012!10474-106I6;0.403114!10600-108E6;0.420204!10684-109E9;0.26394!12226-129F3;0.73469!12227-129F4;0.235916!10508-107D4;0.498847!10539-107G8;0.124064!10607-108F4;0.191973!10555-107I6;0.0835936!10774-110F9;0.242678!10637-108I7;0.150784!10663-109C6;0.936571!10728-110A8;0.338689!10729-110A9;0.335759!10430-106D7;0.502073!10730-110B1;0.764637!10813-111B3;0.04526!10812-111B2;0.426275!10037-101F1;0.0137769!10172-103C1;0.476603!10163-103B1;0.551582!10076-102A4;0.688988!10073-102A1;0.420128!10036-101E9;0.104727!10195-103E6;0.483189!10277-104E7;0.480005!10434-106E2;0.947046!10550-107I1;0.258164!10545-107H5;0.0316781!10544-107H4;0.225661!10704-109H2;0.265581!10510-107D6;0.444795!10558-107I9;0.434907!10020-101D2;0.334381!10732-110B3;0.629233!10049-101G4;0.374635!10698-109G5;0.13068!10437-106E5;0.816482!10417-106C3;0.609157!10035-101E8;0.544191!10171-103B9;0.447579!10157-103A4;0.492357!10034-101E7;0.613887!10072-101I9;0.469844!10199-103F1;0.117562!10200-103F2;0.816826!10697-109G4;0.649332!10723-110A3;0.710746!10179-103C8;0.0216308!10160-103A7;0.645541!10180-103C9;0.533887!10162-103A9;0.649799!10021-101D3;0.707641!10840-111E3;0.55182!10706-109H4;0.195882!10033-101E6;0.955747!10032-101E5;0.556954!10490-107B4;0.467696!10439-106E7;0.147758!10022-101D4;0.045893!10176-103C5;0.874204!10469-106I1;0.567774!10067-101I4;0.754649!10411-106B6;0.468571!10471-106I3;0.0505627!10030-101E3;0.271552!10475-106I7;0.828353!10787-110H4;0.035497!10477-106I9;0.266452!10695-109G2;0.113851!11771-123I7;0.218867!11772-123I8;0.170602!11773-123I9;0.164303!10093-102C3;0.41941!10442-106F1;0.696058!10442-106F1;0.721404!10201-103F3;0.744949!10639-108I9;0.466194!11843-124H7;0.0941461!11841-124H5;0.184!10693-109F9;0.0998999!10436-106E4;0.496467!10483-107A6;0.912077!10282-104F3;0.696068!10023-101D5;0.884041!10066-101I3;0.855353!10065-101I2;0.391806!10800-110I8;0.332887!10610-108F7;0.0981144!10841-111E4;0.0144961!10541-107H1;0.137342!10842-111E5;0.0788485!10562-108A4;0.0178508!10024-101D6;0.213911!10064-101I1;0.565198!10609-108F6;0.748231!10048-101G3;0.236366!10781-110G7;0.670936!10181-103D1;0.568702!10159-103A6;0.930194!10056-101H2;0.900454!10737-110B8;0.377938!10025-101D7;0.235324!10044-101F8;0.00339636!10424-106D1;0.0844173!10463-106H4;0.6471!10616-108G4;0.256273!10486-107A9;0.73341!10062-101H8;0.893422!10202-103F4;0.503739!10158-103A5;0.750926!10441-106E9;0.900344!10031-101E4;0.0469299!10063-101H9;0.493465!10063-101H9;0.175836!11763-123H8;0.748575!11765-123I1;0.193126!11768-123I4;0.125309!10807-111A6;0.180928!10790-110H7;0.00553901!10798-110I6;1.46032e-07!10786-110H3;0.569825!10591-108D6;0.00437002!10593-108D8;0.00258438!10590-108D5;0.000357084!10026-101D8;0.014401!10096-102C6;0.87961!10168-103B6;0.157606!10154-103A1;0.688853!10209-103G2;0.750487!10061-101H7;0.874638!10027-101D9;0.415313!10043-101F7;0.00210988!10783-110G9;0.0333167!10028-101E1;0.0137095!10060-101H6;0.324202!10203-103F5;0.880261!10059-101H5;0.917252!10047-101G2;0.438764!10029-101E2;0.17685!10058-101H4;0.697713!10418-106C4;0.495416!10492-107B6;0.115623!10694-109G1;0.474972!10797-110I5;0.856536!10057-101H3;0.527674!10100-102D1;0.723276!10055-101H1;0.796937!10204-103F6;0.243627!10191-103E2;0.761743!10563-108A5;0.165248
|name=13-CGTCACAGGAAAC,CNhs11959,BestGuess:EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq/Homer(0.731501031790585),T:4914.0(53.57%),B:19036.8(47.52%),P:1e-30
|name=13-CGTCACAGGAAAC,CNhs11959,BestGuess:EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq/Homer(0.731501031790585),T:4914.0(53.57%),B:19036.8(47.52%),P:1e-30
|tomtom_result=SPIB#MA0081.1;-4;0.00332494;1.58267;1;7;CGTCACAGGAAAC;AGAGGAA;+!ABF1#MA0265.1;1;0.00369762;1.76007;1;13;CGTCACAGGAAAC;ATATCACTTTATACGA;-!FEV#MA0156.1;-5;0.00461858;2.19844;1;8;CGTCACAGGAAAC;CAGGAAAT;+!FOXA1#MA0148.1;-3;0.0069196;3.29373;1;10;CGTCACAGGAAAC;CAAAGTAAACA;-!id1#MA0120.1;0;0.007786;3.70614;1;12;CGTCACAGGAAAC;CGAAAAGGAAAA;-!MET31#MA0333.1;0;0.00967666;4.60609;1;9;CGTCACAGGAAAC;CGCCACACT;-!RME1#MA0370.1;-1;0.00969529;4.61496;1;10;CGTCACAGGAAAC;TCCAAAGGAA;+!MET32#MA0334.1;0;0.0105458;5.01982;1;7;CGTCACAGGAAAC;CGCCACA;+!Pax2#MA0067.1;0;0.0116055;5.52423;1;8;CGTCACAGGAAAC;AGTCACGG;+!STAT1#MA0137.2;1;0.0127321;6.06049;1;13;CGTCACAGGAAAC;CATTTCCCGGAAACC;+!ETS1#MA0098.1;-6;0.0138704;6.6023;1;6;CGTCACAGGAAAC;CGGAAA;-!Eip74EF#MA0026.1;-5;0.014388;6.8487;1;7;CGTCACAGGAAAC;CCGGAAG;+!LEU3#MA0324.1;1;0.0145681;6.9344;1;9;CGTCACAGGAAAC;CCGTTACCGG;+!ELK1#MA0028.1;-2;0.0154894;7.37294;1;10;CGTCACAGGAAAC;GAGCCGGAAG;+!Stat3#MA0144.1;-2;0.0159694;7.60142;1;10;CGTCACAGGAAAC;TTCCAGGAAG;+!Foxa2#MA0047.2;-2;0.0181539;8.64123;1;11;CGTCACAGGAAAC;CCTAAGTAAACA;-
}}
}}

Latest revision as of 18:17, 7 September 2012

Full Name: 13-CGTCACAGGAAAC,CNhs11959,BestGuess:EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq/Homer(0.731501031790585),T:4914.0(53.57%),B:19036.8(47.52%),P:1e-30

Motif matrix
POACGT
1491.43439.8491.4491.4
2491.4491.43439.8491.4
3491.4491.4491.43439.8
4491.43439.8491.4491.4
53439.8491.4491.4491.4
6491.43439.8491.4491.4
73439.8491.4491.4491.4
8491.4491.43439.8491.4
9491.4491.43439.8491.4
103439.8491.4491.4491.4
113439.8491.4491.4491.4
123439.8491.4491.4491.4
13491.43439.8491.4491.4

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SPIB#MA0081.1-40.003324941.5826717CGTCACAGGAAACAGAGGAA+
ABF1#MA0265.110.003697621.76007113CGTCACAGGAAACATATCACTTTATACGA-
FEV#MA0156.1-50.004618582.1984418CGTCACAGGAAACCAGGAAAT+
FOXA1#MA0148.1-30.00691963.29373110CGTCACAGGAAACCAAAGTAAACA-
id1#MA0120.100.0077863.70614112CGTCACAGGAAACCGAAAAGGAAAA-
MET31#MA0333.100.009676664.6060919CGTCACAGGAAACCGCCACACT-
RME1#MA0370.1-10.009695294.61496110CGTCACAGGAAACTCCAAAGGAA+
MET32#MA0334.100.01054585.0198217CGTCACAGGAAACCGCCACA+
Pax2#MA0067.100.01160555.5242318CGTCACAGGAAACAGTCACGG+
STAT1#MA0137.210.01273216.06049113CGTCACAGGAAACCATTTCCCGGAAACC+
ETS1#MA0098.1-60.01387046.602316CGTCACAGGAAACCGGAAA-
Eip74EF#MA0026.1-50.0143886.848717CGTCACAGGAAACCCGGAAG+
LEU3#MA0324.110.01456816.934419CGTCACAGGAAACCCGTTACCGG+
ELK1#MA0028.1-20.01548947.37294110CGTCACAGGAAACGAGCCGGAAG+
Stat3#MA0144.1-20.01596947.60142110CGTCACAGGAAACTTCCAGGAAG+
Foxa2#MA0047.2-20.01815398.64123111CGTCACAGGAAACCCTAAGTAAACA-
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