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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0005375;copper ion transmembrane transporter activity;0.00305968675443354;11979,20529!GO:0006825;copper ion transport;0.00305968675443354;11979,20529!GO:0004497;monooxygenase activity;0.011632809177397;226564,433247,102294!GO:0046915;transition metal ion transmembrane transporter activity;0.011632809177397;11979,20529!GO:0015082;di-, tri-valent inorganic cation transmembrane transporter activity;0.016651154664395;11979,20529!GO:0001681;sialate O-acetylesterase activity;0.0216281037515903;22619!GO:0004058;aromatic-L-amino-acid decarboxylase activity;0.0216281037515903;13195!GO:0015680;intracellular copper ion transport;0.0216281037515903;11979!GO:0004034;aldose 1-epimerase activity;0.0216281037515903;319625!GO:0005507;copper ion binding;0.0237324040824488;11979,20529!GO:0000041;transition metal ion transport;0.0248674700475204;11979,20529!GO:0043682;copper-transporting ATPase activity;0.0299334793539685;11979!GO:0004008;copper-exporting ATPase activity;0.0299334793539685;11979!GO:0050327;testosterone 17-beta-dehydrogenase activity;0.0416747881252043;27400!GO:0005783;endoplasmic reticulum;0.042507934462699;226564,27400,102294,12038!GO:0004104;cholinesterase activity;0.045740498844209;12038!GO:0008126;acetylesterase activity;0.045740498844209;22619!GO:0004091;carboxylesterase activity;0.0480169632723307;22619,12038!GO:0016491;oxidoreductase activity;0.0485779855711809;226564,433247,27400,102294!GO:0004499;flavin-containing monooxygenase activity;0.0485779855711809;226564!GO:0030001;metal ion transport;0.0497145519814456;11979,20529,241877!GO:0006882;cellular zinc ion homeostasis;0.0497145519814456;11979!GO:0055069;zinc ion homeostasis;0.0497145519814456;11979!GO:0022890;inorganic cation transmembrane transporter activity;0.0497145519814456;11979,20529!GO:0004745;retinol dehydrogenase activity;0.0497145519814456;27400!GO:0008508;bile acid:sodium symporter activity;0.0497145519814456;241877!GO:0016857;racemase and epimerase activity, acting on carbohydrates and derivatives;0.0497145519814456;319625!GO:0004303;estradiol 17-beta-dehydrogenase activity;0.0497145519814456;27400!GO:0015125;bile acid transmembrane transporter activity;0.0497145519814456;241877!GO:0006878;cellular copper ion homeostasis;0.0497145519814456;11979!GO:0005624;membrane fraction;0.0497145519814456;226564,27400,11979!GO:0008324;cation transmembrane transporter activity;0.0497145519814456;11979,20529,241877!GO:0006812;cation transport;0.0497145519814456;11979,20529,241877!GO:0055070;copper ion homeostasis;0.0497145519814456;11979!GO:0016853;isomerase activity;0.0497145519814456;319625,68636!GO:0005792;microsome;0.0497145519814456;226564,27400!GO:0042598;vesicular fraction;0.0497145519814456;226564,27400!GO:0042423;catecholamine biosynthetic process;0.0497145519814456;13195!GO:0005641;nuclear envelope lumen;0.0497145519814456;12038!}}
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.0011561014669065,1.05559262316648,1.02241568443072,1.17802789701214,1.18497879690149,0.63569229237027,0.651700909545432,-0.0963127039161774,-0.172330681868857,-0.163096554651642,-0.150562682853945,-0.156412514656379,-0.113447941126974,-0.136106252549036,-0.0120157912570062,-0.0073410944176997,-0.012293758453267,-0.082171954236076,-0.0785370767203471,-0.0868782070522703,0.221801542582572,-0.127616013010523,-0.127357002272211,1.07865007293839,1.02270237631378,1.02285722151824,1.0058042820218,0.953121133682709,1.0996618604117,1.08856568034825,0.661086439567756,-0.0945764758190479,-0.119638507155099,-0.191160692579678,0.560834195397412,0.594994774431507,0.514536526244394,-0.0894729733889982,-0.0729625356127023,-0.0792158019808808,-0.0932932697759579,-0.117477390656946,-0.101648633906886,0.00871891052435115,0.0222427932668517,-0.0260478470243846,-0.0399473725414936,-0.0351362770884973,0.0264103843092677,0.00867227188482872,-0.0058256636164082,-0.0629286042388048,-0.102516334906341,-0.114008618127093,-0.119228759919713,0.00199659180529014,0.0704699157252411,0.000230792951392291,-0.14420432761124,-0.149876466609382,-0.111426367837198,-0.0670489639326117,-0.023894196189639,-0.0195517550070054,-0.00951220814273091,-0.0190822134945897,-0.0808317895148672,-0.0675531391000236,-0.142508218602255,-0.138387595700563,-0.150141913155223,-0.0669538710141533,-0.0466294569065854,-0.153461737661835,-0.147871031723843,-0.1611479924823,-0.0595072115794508,-0.035132599034809,-0.0530162987265799,-0.13064556001065,-0.136257409662432,-0.124320551223969,-0.0476853739942187,-0.0323450180081635,0.00629376308823734,-0.0525944161586143,-0.0530783670396792,-0.0875478756453593,-0.0742954738660762,-0.0105963271077587,0.25724220840834,1.12914253312759,0.953731692878283,1.25456445561985,1.40107917927097,1.31336500942679,0.912988043321229,-0.00267024547068908,-0.0254648753985747,-0.0344156592359924,0.018820025767806,0.0569257566690562,-0.00706586138853614,-0.201402502721634,-0.0249984067607218,-0.0337503681316774,-0.0468719421934071,1.0782085392892,0.0333306408373671,0.133873228817884,0.0532849408165231,0.130142717638606,0.15807949824099,0.120213044654951,0.142901804908848,0.207382169441257,0.234000146824904,0.307384753022364,0.000281268177962451,0.0376635587455844,0.0496621986478527,0.0434477099778725,0.537229988693259,-0.0252703035043946,-0.0327445821770945,1.18593027177157,-0.0942047771208138,-0.0955144315401517,-0.0790119455994954,-0.0177765745063694,-0.0395328309233566,-0.117294466887518,-0.0382303116726672,-0.0434971938497976,-0.016121368343454,-0.0398637599748091,0.0349636430142184,0.153492109699917,0.109446144084379,0.104334492006935,-0.037872932610725,-0.0412236816130135,-0.022227352213265,0.0465560525132716,-0.0341154297915242,-0.0324349512775825,-0.0329253450800912,0.0507128750833501,-0.0943790363900063,-0.0396631186039902,-0.0549310702479849,-0.0562233522930392,-0.0409074529715645,-0.0160987722847432,-0.0289715651402463,-0.0342798751634308,-0.0887421897005545,-0.104984569362313,-0.0741250624525518,-0.002260603359991,0.0352884074064573,-0.0113585080143715,0.00143772885883813,0.00171233725999406,0.0033285026653024,0.00520647463268591,0.00943887844430687,0.0195571649408368,0.00162889640676881,0.0454086207791839,0.0649014784797778,0.0679418017298704,0.115702440616129,0.113302569161031,-0.01360820614348,-0.0687145152180298,1.64256452721462,1.03507456665013,0.0685995578170346,0.125149728555433,0.303817170656961,0.523984120469875,0.615527525694054,0.721179068981679,1.14930834894052,0.807127613626368,0.736022662853501,0.776119725525787,0.774118567483373,1.10965778455545,1.22788433433751,1.3028339117284,-0.0214260504512941,0.0830105986666449,0.0796325313262847,0.0944263480552288,0.149365453769187,0.172529617308694,0.282109026541992,0.418722603945677,0.447949410978404,0.483672450264385,1.35270642734595,0.238981928191182,0.318688265507218,0.396217382651723,0.446124025077065,0.553139056215596,0.621868723488051,0.706613168501024,0.72204937902729,0.95901990669847,1.00708052261599,1.09534100774518,1.16844215594005,1.2320800540676,1.30853432264615,1.28692150995279,0.141317629231152,-0.0179054334186734,-0.00906850240831827,-0.0105670216555272,0.00798946378729501,0.0159926745770181,0.0842701058301377,0.0847185571266853,0.0574795080931936,0.0778586621254999,0.0591877153462582,0.142031099994737,0.13500558593277,0.149912004489873,0.0814220754743735,0.0677432915388787,0.0800804210729047,0.0820820074720734,0.0193679516829059,0.00957608030829847,-0.0961379647037976,0.0810122167040205,0.0250173203369216,-0.0373486268945373,0.00772091810057442,0.0183336348677338,-0.00772058646379412,0.0172434535367947,0.0403595052084892,0.0362204128325811,0.0198288764001976,-0.0307701729032782,0.138930370542591,0.0682461795566781,0.0160611594002479,0.149876110335833,0.2158581096761,0.169459093390727,0.181507218480264,0.271241696178494,0.22057839894485,0.243578026537486,0.421719992466505,0.268430689630221,0.346524088810832,0.27690439462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|gostat_on_MCL_coexpression=GO:0005375;copper ion transmembrane transporter activity;0.00305968675443354;11979,20529!GO:0006825;copper ion transport;0.00305968675443354;11979,20529!GO:0004497;monooxygenase activity;0.011632809177397;226564,433247,102294!GO:0046915;transition metal ion transmembrane transporter activity;0.011632809177397;11979,20529!GO:0015082;di-, tri-valent inorganic cation transmembrane transporter activity;0.016651154664395;11979,20529!GO:0001681;sialate O-acetylesterase activity;0.0216281037515903;22619!GO:0004058;aromatic-L-amino-acid decarboxylase activity;0.0216281037515903;13195!GO:0015680;intracellular copper ion transport;0.0216281037515903;11979!GO:0004034;aldose 1-epimerase activity;0.0216281037515903;319625!GO:0005507;copper ion binding;0.0237324040824488;11979,20529!GO:0000041;transition metal ion transport;0.0248674700475204;11979,20529!GO:0043682;copper-transporting ATPase activity;0.0299334793539685;11979!GO:0004008;copper-exporting ATPase activity;0.0299334793539685;11979!GO:0050327;testosterone 17-beta-dehydrogenase activity;0.0416747881252043;27400!GO:0005783;endoplasmic reticulum;0.042507934462699;226564,27400,102294,12038!GO:0004104;cholinesterase activity;0.045740498844209;12038!GO:0008126;acetylesterase activity;0.045740498844209;22619!GO:0004091;carboxylesterase activity;0.0480169632723307;22619,12038!GO:0016491;oxidoreductase activity;0.0485779855711809;226564,433247,27400,102294!GO:0004499;flavin-containing monooxygenase activity;0.0485779855711809;226564!GO:0030001;metal ion transport;0.0497145519814456;11979,20529,241877!GO:0006882;cellular zinc ion homeostasis;0.0497145519814456;11979!GO:0055069;zinc ion homeostasis;0.0497145519814456;11979!GO:0022890;inorganic cation transmembrane transporter activity;0.0497145519814456;11979,20529!GO:0004745;retinol dehydrogenase activity;0.0497145519814456;27400!GO:0008508;bile acid:sodium symporter activity;0.0497145519814456;241877!GO:0016857;racemase and epimerase activity, acting on carbohydrates and derivatives;0.0497145519814456;319625!GO:0004303;estradiol 17-beta-dehydrogenase activity;0.0497145519814456;27400!GO:0015125;bile acid transmembrane transporter activity;0.0497145519814456;241877!GO:0006878;cellular copper ion homeostasis;0.0497145519814456;11979!GO:0005624;membrane fraction;0.0497145519814456;226564,27400,11979!GO:0008324;cation transmembrane transporter activity;0.0497145519814456;11979,20529,241877!GO:0006812;cation transport;0.0497145519814456;11979,20529,241877!GO:0055070;copper ion homeostasis;0.0497145519814456;11979!GO:0016853;isomerase activity;0.0497145519814456;319625,68636!GO:0005792;microsome;0.0497145519814456;226564,27400!GO:0042598;vesicular fraction;0.0497145519814456;226564,27400!GO:0042423;catecholamine biosynthetic process;0.0497145519814456;13195!GO:0005641;nuclear envelope lumen;0.0497145519814456;12038!
}}

Revision as of 11:05, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:127444645..127444684,-p1@Hsd17b6
Mm9::chr11:11798095..11798153,-p1@Ddc
Mm9::chr11:66838646..66838681,+p1@Tmem220
Mm9::chr11:72288544..72288572,-p3@Spns2
Mm9::chr12:37968316..37968345,+p2@Agmo
Mm9::chr12:37968391..37968484,+p1@Agmo
Mm9::chr12:37968486..37968491,+p11@Agmo
Mm9::chr12:37968492..37968508,+p3@Agmo
Mm9::chr12:37968512..37968526,+p4@Agmo
Mm9::chr12:60196558..60196620,+p1@Mia2
Mm9::chr12:60196640..60196645,+p2@Mia2
Mm9::chr13:24006867..24006880,-p1@Slc17a4
Mm9::chr13:95022995..95023025,-p@chr13:95022995..95023025
-
Mm9::chr14:22245905..22245906,+p@chr14:22245905..22245906
+
Mm9::chr15:75047106..75047122,+p1@uc007wgr.1
Mm9::chr17:24987235..24987264,-p1@Fahd1
Mm9::chr17:80526981..80527024,+p1@Galm
Mm9::chr17:80527039..80527050,+p3@Galm
Mm9::chr17:85082490..85082497,+p5@Abcg8
Mm9::chr19:39815583..39815604,-p1@Cyp2c68
Mm9::chr1:164744004..164744014,-p4@Fmo4
Mm9::chr3:10335715..10335724,-p4@Slc10a5
Mm9::chr3:73512124..73512199,-p1@Bche
Mm9::chr4:62021729..62021792,+p1@Slc31a1
Mm9::chr5:87335963..87335980,-p1@Ugt2b34
Mm9::chr7:4581876..4581935,-p1@Tmem86b
Mm9::chr8:107257897..107257924,+p1@Ces2a
Mm9::chr8:23170491..23170528,-p1@Atp7b
Mm9::chr8:46418478..46418530,-p1@Cyp4v3
Mm9::chr8:46418543..46418562,-p2@Cyp4v3
Mm9::chr9:37421391..37421443,+p1@Siae


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005375copper ion transmembrane transporter activity0.00305968675443354
GO:0006825copper ion transport0.00305968675443354
GO:0004497monooxygenase activity0.011632809177397
GO:0046915transition metal ion transmembrane transporter activity0.011632809177397
GO:0015082di-, tri-valent inorganic cation transmembrane transporter activity0.016651154664395
GO:0001681sialate O-acetylesterase activity0.0216281037515903
GO:0004058aromatic-L-amino-acid decarboxylase activity0.0216281037515903
GO:0015680intracellular copper ion transport0.0216281037515903
GO:0004034aldose 1-epimerase activity0.0216281037515903
GO:0005507copper ion binding0.0237324040824488
GO:0000041transition metal ion transport0.0248674700475204
GO:0043682copper-transporting ATPase activity0.0299334793539685
GO:0004008copper-exporting ATPase activity0.0299334793539685
GO:0050327testosterone 17-beta-dehydrogenase activity0.0416747881252043
GO:0005783endoplasmic reticulum0.042507934462699
GO:0004104cholinesterase activity0.045740498844209
GO:0008126acetylesterase activity0.045740498844209
GO:0004091carboxylesterase activity0.0480169632723307
GO:0016491oxidoreductase activity0.0485779855711809
GO:0004499flavin-containing monooxygenase activity0.0485779855711809
GO:0030001metal ion transport0.0497145519814456
GO:0006882cellular zinc ion homeostasis0.0497145519814456
GO:0055069zinc ion homeostasis0.0497145519814456
GO:0022890inorganic cation transmembrane transporter activity0.0497145519814456
GO:0004745retinol dehydrogenase activity0.0497145519814456
GO:0008508bile acid:sodium symporter activity0.0497145519814456
GO:0016857racemase and epimerase activity, acting on carbohydrates and derivatives0.0497145519814456
GO:0004303estradiol 17-beta-dehydrogenase activity0.0497145519814456
GO:0015125bile acid transmembrane transporter activity0.0497145519814456
GO:0006878cellular copper ion homeostasis0.0497145519814456
GO:0005624membrane fraction0.0497145519814456
GO:0008324cation transmembrane transporter activity0.0497145519814456
GO:0006812cation transport0.0497145519814456
GO:0055070copper ion homeostasis0.0497145519814456
GO:0016853isomerase activity0.0497145519814456
GO:0005792microsome0.0497145519814456
GO:0042598vesicular fraction0.0497145519814456
GO:0042423catecholamine biosynthetic process0.0497145519814456
GO:0005641nuclear envelope lumen0.0497145519814456



Relative expression of the co-expression cluster over median <br>Analyst:


"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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