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MCL coexpression mm9:883: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0004105;choline-phosphate cytidylyltransferase activity;0.0179691565596517;236899!GO:0001541;ovarian follicle development;0.0409124068227524;236899!GO:0022601;menstrual cycle phase;0.0409124068227524;236899!GO:0022602;menstrual cycle process;0.0409124068227524;236899!GO:0008585;female gonad development;0.0409124068227524;236899!GO:0046545;development of primary female sexual characteristics;0.0409124068227524;236899!GO:0046660;female sex differentiation;0.0409124068227524;236899!GO:0042698;menstrual cycle;0.0409124068227524;236899!GO:0008406;gonad development;0.0409124068227524;236899!GO:0048608;reproductive structure development;0.0409124068227524;236899!GO:0045137;development of primary sexual characteristics;0.0409124068227524;236899!GO:0008654;phospholipid biosynthetic process;0.0409124068227524;236899!GO:0048609;reproductive process in a multicellular organism;0.0409124068227524;236899!GO:0032504;multicellular organism reproduction;0.0409124068227524;236899!GO:0046467;membrane lipid biosynthetic process;0.0409124068227524;236899!GO:0007548;sex differentiation;0.0409124068227524;236899!GO:0003006;reproductive developmental process;0.0453468041274223;236899!
|gostat_on_MCL_coexpression=GO:0004105;choline-phosphate cytidylyltransferase activity;0.0179691565596517;236899!GO:0001541;ovarian follicle development;0.0409124068227524;236899!GO:0022601;menstrual cycle phase;0.0409124068227524;236899!GO:0022602;menstrual cycle process;0.0409124068227524;236899!GO:0008585;female gonad development;0.0409124068227524;236899!GO:0046545;development of primary female sexual characteristics;0.0409124068227524;236899!GO:0046660;female sex differentiation;0.0409124068227524;236899!GO:0042698;menstrual cycle;0.0409124068227524;236899!GO:0008406;gonad development;0.0409124068227524;236899!GO:0048608;reproductive structure development;0.0409124068227524;236899!GO:0045137;development of primary sexual characteristics;0.0409124068227524;236899!GO:0008654;phospholipid biosynthetic process;0.0409124068227524;236899!GO:0048609;reproductive process in a multicellular organism;0.0409124068227524;236899!GO:0032504;multicellular organism reproduction;0.0409124068227524;236899!GO:0046467;membrane lipid biosynthetic process;0.0409124068227524;236899!GO:0007548;sex differentiation;0.0409124068227524;236899!GO:0003006;reproductive developmental process;0.0453468041274223;236899!
}}
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Revision as of 12:48, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:102180696..102180760,-p2@Ubtf
Mm9::chr11:94871166..94871204,+p2@Samd14
Mm9::chr11:94871212..94871233,+p4@Samd14
Mm9::chr11:94871250..94871261,+p11@Samd14
Mm9::chr11:94871280..94871343,+p1@Samd14
Mm9::chr11:94871558..94871590,+p5@Samd14
Mm9::chr11:94871607..94871639,-p@chr11:94871607..94871639
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Mm9::chrX:90920427..90920500,+p1@Pcyt1b


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004105choline-phosphate cytidylyltransferase activity0.0179691565596517
GO:0001541ovarian follicle development0.0409124068227524
GO:0022601menstrual cycle phase0.0409124068227524
GO:0022602menstrual cycle process0.0409124068227524
GO:0008585female gonad development0.0409124068227524
GO:0046545development of primary female sexual characteristics0.0409124068227524
GO:0046660female sex differentiation0.0409124068227524
GO:0042698menstrual cycle0.0409124068227524
GO:0008406gonad development0.0409124068227524
GO:0048608reproductive structure development0.0409124068227524
GO:0045137development of primary sexual characteristics0.0409124068227524
GO:0008654phospholipid biosynthetic process0.0409124068227524
GO:0048609reproductive process in a multicellular organism0.0409124068227524
GO:0032504multicellular organism reproduction0.0409124068227524
GO:0046467membrane lipid biosynthetic process0.0409124068227524
GO:0007548sex differentiation0.0409124068227524
GO:0003006reproductive developmental process0.0453468041274223



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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