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MCL coexpression mm9:2804: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0008624;induction of apoptosis by extracellular signals;0.0208184955897661;223453!GO:0012502;induction of programmed cell death;0.0361584397085411;223453!GO:0006917;induction of apoptosis;0.0361584397085411;223453!GO:0043065;positive regulation of apoptosis;0.0361584397085411;223453!GO:0043068;positive regulation of programmed cell death;0.0361584397085411;223453!
|gostat_on_MCL_coexpression=GO:0008624;induction of apoptosis by extracellular signals;0.0208184955897661;223453!GO:0012502;induction of programmed cell death;0.0361584397085411;223453!GO:0006917;induction of apoptosis;0.0361584397085411;223453!GO:0043065;positive regulation of apoptosis;0.0361584397085411;223453!GO:0043068;positive regulation of programmed cell death;0.0361584397085411;223453!
}}
}}

Revision as of 13:19, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:86715646..86715669,-p1@Gm4024
p1@Tmed10
Mm9::chr15:31154126..31154155,+p2@Dap
Mm9::chr15:31154161..31154285,+p1@Dap


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0008624induction of apoptosis by extracellular signals0.0208184955897661
GO:0012502induction of programmed cell death0.0361584397085411
GO:0006917induction of apoptosis0.0361584397085411
GO:0043065positive regulation of apoptosis0.0361584397085411
GO:0043068positive regulation of programmed cell death0.0361584397085411



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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