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MCL coexpression mm9:2827: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000107!4.61e-09!9;CL:0000540!2.34e-08!33;CL:0000047!2.34e-08!33;CL:0000031!2.34e-08!33;CL:0000404!2.34e-08!33;CL:0000221!4.51e-08!44;CL:0000133!4.51e-08!44;CL:0002319!1.24e-07!43
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000010!7.52e-11!11;UBERON:0002410!4.61e-09!9;UBERON:0002107!2.93e-08!22;UBERON:0007499!2.93e-08!22;UBERON:0006925!2.93e-08!22;UBERON:0009497!2.93e-08!22;UBERON:0000015!2.93e-08!22;UBERON:0002423!2.93e-08!22;UBERON:0006235!2.93e-08!22;UBERON:0008835!2.93e-08!22;UBERON:0003894!2.93e-08!22;UBERON:0004161!2.93e-08!22;UBERON:0008836!2.93e-08!22;UBERON:0009854!1.32e-07!23;UBERON:0009856!1.32e-07!23
}}
}}

Revision as of 19:05, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:20320305..20320309,-p@chr13:20320305..20320309
-
Mm9::chr19:58528925..58528963,-p6@Gfra1
Mm9::chr19:58528980..58529002,-p8@Gfra1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
autonomic neuron4.61e-099
neuron2.34e-0833
neuronal stem cell2.34e-0833
neuroblast2.34e-0833
electrically signaling cell2.34e-0833
ectodermal cell4.51e-0844
neurectodermal cell4.51e-0844
neural cell1.24e-0743

Uber Anatomy
Ontology termp-valuen
peripheral nervous system7.52e-1111
autonomic nervous system4.61e-099
liver2.93e-0822
epithelial sac2.93e-0822
digestive gland2.93e-0822
epithelium of foregut-midgut junction2.93e-0822
anatomical boundary2.93e-0822
hepatobiliary system2.93e-0822
foregut-midgut junction2.93e-0822
hepatic diverticulum2.93e-0822
liver primordium2.93e-0822
septum transversum2.93e-0822
liver bud2.93e-0822
digestive tract diverticulum1.32e-0723
sac1.32e-0723


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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