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Revision as of 19:54, 22 November 2012
FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) provide a way to explore samples, transcriptional initiations, and regulators analyzed in the FANTOM5 project
Gene Search | |||
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Examples | Browse | ||
Samples | Details of profiled samples (incl. primary cells, cell lines, and tissues) | ||
Co-expression |
CAGE peaks (TSS regions) are grouped based on expression, by using MCL |
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MOTIFs |
de-novo motifs discovered in the proximal region to the CAGE peaks, which are grouped by MacroApe |
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Transcription factors |
Transcription factors. |
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Sample classifications |
Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology, consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON). |