MCL coexpression mm9:1005

Phase1 CAGE Peaks

	Short description
Mm9::chr10:10277929..10277988,-	p1@Rab32
Mm9::chr7:19470028..19470058,+	p1@Pglyrp1
Mm9::chr7:19475704..19475720,-	p@chr7:19475704..19475720 -
Mm9::chr7:19475766..19475773,-	p@chr7:19475766..19475773 -
Mm9::chr7:38968666..38968687,+	p4@1600014C10Rik
Mm9::chr7:38968823..38968888,+	p1@1600014C10Rik
Mm9::chrX:35988243..35988270,-	p2@C1galt1c1

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0016019	peptidoglycan receptor activity	0.0188384740196361
GO:0042834	peptidoglycan binding	0.0188384740196361
GO:0008329	pattern recognition receptor activity	0.0188384740196361
GO:0008745	N-acetylmuramoyl-L-alanine amidase activity	0.0188384740196361
GO:0009253	peptidoglycan catabolic process	0.0188384740196361
GO:0000270	peptidoglycan metabolic process	0.0188384740196361

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

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Uber Anatomy

Ontology term	p-value	n
gastrointestinal system	3.50e-13	47
endoderm-derived structure	4.00e-13	118
endoderm	4.00e-13	118
presumptive endoderm	4.00e-13	118
digestive system	5.91e-13	116
digestive tract	5.91e-13	116
primitive gut	5.91e-13	116
subdivision of digestive tract	6.08e-12	114
intestine	2.05e-10	31
organ component layer	4.25e-10	24
mucosa	1.42e-08	15
intestinal mucosa	2.56e-07	13
anatomical wall	2.56e-07	13
wall of intestine	2.56e-07	13
gastrointestinal system mucosa	2.56e-07	13

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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