NonredundantMotifs:75: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;24.832028;1.917258;68.678198;0.956812!2;2.928825;0;91.505237;1.950234!3;0.937477;3.795166;88.774324;2.877329!4;0.980334;0.93063;5.701175;88.772157!5;0.929355;91.626491;0;3.82845!6;78.155421;2.85302;10.480106;4.895749!7;17.086571;49.342896;2.958456;26.996373!8;21.02845;22.015464;32.091539;21.248843!9;12.559783;5.566321;74.328059;3.930133!10;52.179296;0.954716;43.250284;0!11;1.916475;1.881884;92.585937;0!12;0.986032;4.754196;24.95519;65.688878!13;8.446048;3.776238;5.895548;78.266462!14;8.87012;80.88622;1.892265;4.735691!15;75.535439;10.274354;8.601471;1.973032 | |||
|entrez_gene_id= | |entrez_gene_id= | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0074.1;RXRA::VDR | |motif_cluster_2013_march_motif_members= /SWISSREGULON:RXRA_VDR(dimer).p2 /JASPAR:MA0074.1;RXRA::VDR /HOMER:VDR_GM10855-VDR+vitD-ChIP-Seq /HOCOMOCO:VDR_f2 | ||
|name=known75 | |name=known75 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
Revision as of 10:46, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known75
- db :SWISSREGULON
- Id :RXRA_VDR(dimer).p2
- name :
- score :0.17179926901070464
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
