NonredundantMotifs:116: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|PWM=PO;A;C;G;T!1;17.811892;23.718126;235.57367;20.216234!2;189.5473;20.427225;23.359456;63.985941!3;28.064217;7.052422;65.435993;196.76729!4;12.386786;6.521042;12.166767;266.245327!5;28.45556;4.536592;3.368424;260.959346!6;285.785454;4.314371;3.071382;4.148715!7;257.17135;15.935174;5.185202;19.028196!8;56.399198;122.126412;7.639521;111.154791!9;209.108851;7.714919;49.149441;31.346711!10;27.864448;38.655092;6.287882;224.5125!11;240.21541;14.125543;35.257974;7.720995!12;210.10813;6.228612;50.970281;30.012899 | |PWM=PO;A;C;G;T!1;17.811892;23.718126;235.57367;20.216234!2;189.5473;20.427225;23.359456;63.985941!3;28.064217;7.052422;65.435993;196.76729!4;12.386786;6.521042;12.166767;266.245327!5;28.45556;4.536592;3.368424;260.959346!6;285.785454;4.314371;3.071382;4.148715!7;257.17135;15.935174;5.185202;19.028196!8;56.399198;122.126412;7.639521;111.154791!9;209.108851;7.714919;49.149441;31.346711!10;27.864448;38.655092;6.287882;224.5125!11;240.21541;14.125543;35.257974;7.720995!12;210.10813;6.228612;50.970281;30.012899 | ||
|entrez_gene_id=CDC5L | |entrez_gene_id=CDC5L | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:CDC5L. | |motif_cluster_2013_march_motif_members= /HOCOMOCO:CDC5L_si /SWISSREGULON:CDC5L.p2 | ||
|name= | |name=non-redundant116 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=CDC5L.p2 | |representative_motif_id=CDC5L.p2 | ||
| Line 12: | Line 12: | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Revision as of 16:47, 29 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant116
- db :SWISSREGULON
- Id :CDC5L.p2
- name :CDC5L
- score :0.04744553038122821
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
