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NonredundantMotifs:121: Difference between revisions

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|PWM=P0;A;C;G;T!1;0.251681069561104;0.208273402702388;0.178525465436638;0.36152006229987!2;0.323865334035595;0.334303016731432;0.205542325777833;0.13628932345514!3;0.30808401815191;0.277004132087553;0.326202749970933;0.0887090997896037!4;0.280609245904245;0.171416370918603;0.168917658130222;0.37905672504693!5;0.734440750185428;0.0312568938223699;0.211473133565692;0.0228292224265097!6;0.00618734015673875;0.990281178704857;0.00105171497537268;0.00247976616303172!7;0.00581932973061003;0.990856180865086;0.00149812379283634;0.00182636561146783!8;0.0438380468490952;0.936501694946557;0.00155026626298767;0.0181099919413597!9;0.022607053473383;0.0580373338758138;0.901005335985791;0.0183502766650118!10;0.000424429057850403;0.787011369867347;0.0265471738971797;0.186017027177623!11;0.980773576159872;0.00288441092022943;0.0112881371476514;0.00505387577224699!12;0.00910016354025402;0.110309548705244;0.067398640215239;0.813191647539263!13;0.247510191439521;0.310538585563303;0.250093336065814;0.191857886931362!14;0.279511388484175;0.211997744589979;0.250716948230666;0.25777391869518!15;0.264450556636199;0.270002412100532;0.142605610458404;0.322941420804866!16;0.227607268597394;0.212076090129562;0.267214464049444;0.2931021772236
|PWM=P0;A;C;G;T!1;0.251681069561104;0.208273402702388;0.178525465436638;0.36152006229987!2;0.323865334035595;0.334303016731432;0.205542325777833;0.13628932345514!3;0.30808401815191;0.277004132087553;0.326202749970933;0.0887090997896037!4;0.280609245904245;0.171416370918603;0.168917658130222;0.37905672504693!5;0.734440750185428;0.0312568938223699;0.211473133565692;0.0228292224265097!6;0.00618734015673875;0.990281178704857;0.00105171497537268;0.00247976616303172!7;0.00581932973061003;0.990856180865086;0.00149812379283634;0.00182636561146783!8;0.0438380468490952;0.936501694946557;0.00155026626298767;0.0181099919413597!9;0.022607053473383;0.0580373338758138;0.901005335985791;0.0183502766650118!10;0.000424429057850403;0.787011369867347;0.0265471738971797;0.186017027177623!11;0.980773576159872;0.00288441092022943;0.0112881371476514;0.00505387577224699!12;0.00910016354025402;0.110309548705244;0.067398640215239;0.813191647539263!13;0.247510191439521;0.310538585563303;0.250093336065814;0.191857886931362!14;0.279511388484175;0.211997744589979;0.250716948230666;0.25777391869518!15;0.264450556636199;0.270002412100532;0.142605610458404;0.322941420804866!16;0.227607268597394;0.212076090129562;0.267214464049444;0.2931021772236
|entrez_gene_id=8521
|entrez_gene_id=8521
|motif_cluster_2013_march_motif_members= /UNIPROBE:Gcm1_primary;SCI09 /HOCOMOCO:GCM1_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:GCM1_f1 /UNIPROBE:Gcm1_primary;SCI09
|name=known121
|name=non-redundant121
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Gcm1_primary
|representative_motif_id=Gcm1_primary
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant121
  • db :UNIPROBE
  • Id :Gcm1_primary
  • name :SCI09
  • score :0.5177820760215112
  • External refs:
EntrezGene:8521
UniProt:8521

  • Internal refs:
EntrezGene:8521


Motif matrix
P0ACGT
10.2516810695611040.2082734027023880.1785254654366380.36152006229987
20.3238653340355950.3343030167314320.2055423257778330.13628932345514
30.308084018151910.2770041320875530.3262027499709330.0887090997896037
40.2806092459042450.1714163709186030.1689176581302220.37905672504693
50.7344407501854280.03125689382236990.2114731335656920.0228292224265097
60.006187340156738750.9902811787048570.001051714975372680.00247976616303172
70.005819329730610030.9908561808650860.001498123792836340.00182636561146783
80.04383804684909520.9365016949465570.001550266262987670.0181099919413597
90.0226070534733830.05803733387581380.9010053359857910.0183502766650118
100.0004244290578504030.7870113698673470.02654717389717970.186017027177623
110.9807735761598720.002884410920229430.01128813714765140.00505387577224699
120.009100163540254020.1103095487052440.0673986402152390.813191647539263
130.2475101914395210.3105385855633030.2500933360658140.191857886931362
140.2795113884841750.2119977445899790.2507169482306660.25777391869518
150.2644505566361990.2700024121005320.1426056104584040.322941420804866
160.2276072685973940.2120760901295620.2672144640494440.2931021772236

Sub Motif Members

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