FFCP PHASE1:Hg19::chr17:48624510..48624571,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64847|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26125|TSSclassifier=W|UniProt=D6RC70,D6R947,Q8TB22|association_with_transcript=0bp_to_ENST00000393244,ENST00000502911,ENST00000505456,ENST00000505559,ENST00000508598,ENST00000510917,ENST00000511605,ENST00000511845,ENST00000515526,NM_022827_5end|description=CAGE_peak_1_at_SPATA20_5end|id=chr17:48624510..48624571,+|ontology_enrichment_celltype=CL:0000055!2.19e-14!180;CL:0000222!4.04e-11!119;CL:0000220!8.27e-10!246;CL:0002321!2.42e-09!248;CL:0000057!3.49e-09!75;CL:0000183!1.55e-07!59;CL:0000680!4.97e-07!57;CL:0000056!4.97e-07!57;CL:0000355!4.97e-07!57;CL:0000192!5.97e-07!42;CL:0000514!5.97e-07!42;CL:0000066!6.34e-07!254|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000222,3.08e-11,121;CL:0002321,1.77e-09,250;CL:0000057,2.14e-09,76;CL:0000680,3.17e-07,58;CL:0000056,3.17e-07,58;CL:0000355,3.17e-07,58;CL:0000192,3.74e-07,43;CL:0000514,3.74e-07,43;CL:0000066,8.72e-07,253|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!1.25e-20!365;UBERON:0002100!4.42e-16!216;UBERON:0000483!1.65e-14!309;UBERON:0000481!1.97e-14!347;UBERON:0000119!4.23e-14!312;UBERON:0003104!5.64e-11!238;UBERON:0009142!5.64e-11!238;UBERON:0005256!9.70e-11!143;UBERON:0003914!1.65e-10!118;UBERON:0004111!4.67e-10!241;UBERON:0000025!1.64e-09!194;UBERON:0000490!2.07e-09!138;UBERON:0001637!4.79e-09!42;UBERON:0003509!4.79e-09!42;UBERON:0004572!4.79e-09!42;UBERON:0000477!5.34e-09!286;UBERON:0004573!6.34e-09!33;UBERON:0004571!6.34e-09!33;UBERON:0000468!1.08e-08!659;UBERON:0009569!1.18e-08!113;UBERON:0000914!6.52e-08!83;UBERON:0002329!6.52e-08!83;UBERON:0003077!6.52e-08!83;UBERON:0003059!6.52e-08!83;UBERON:0007282!6.52e-08!83;UBERON:0009618!6.52e-08!83;UBERON:0007285!6.52e-08!83;UBERON:0001981!8.21e-08!60;UBERON:0007500!8.21e-08!60;UBERON:0004537!8.21e-08!60;UBERON:0006965!8.21e-08!60;UBERON:0004872!1.07e-07!84;UBERON:0000467!1.25e-07!625;UBERON:0002049!1.53e-07!79;UBERON:0007798!1.53e-07!79;UBERON:0000055!1.57e-07!69;UBERON:0004290!1.92e-07!70;UBERON:0000480!1.97e-07!626;UBERON:0000486!2.24e-07!82;UBERON:0001134!4.15e-07!61;UBERON:0002036!4.15e-07!61;UBERON:0003082!4.15e-07!61;UBERON:0005177!5.86e-07!107;UBERON:0002385!8.96e-07!63;UBERON:0001015!8.96e-07!63;UBERON:0000383!8.96e-07!63|ontology_enrichment_uberon_v019=UBERON:0004573;4.02e-08;33!UBERON:0004571;4.02e-08;33!UBERON:0001637;4.19e-07;42!UBERON:0003509;4.19e-07;42!UBERON:0004572;4.19e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.87e-14,199;UBERON:0000483,2.12e-14,306;UBERON:0000119,5.46e-14,309;UBERON:0003104,1.45e-13,160;UBERON:0009142,1.45e-13,160;UBERON:0003914,2.58e-10,117;UBERON:0004111,2.61e-10,240;UBERON:0000490,4.54e-10,148;UBERON:0000025,1.37e-09,192;UBERON:0005256,1.81e-09,122;UBERON:0001637,4.79e-09,42;UBERON:0003509,4.79e-09,42;UBERON:0004572,4.79e-09,42;UBERON:0004573,6.34e-09,33;UBERON:0004571,6.34e-09,33;UBERON:0007503,1.77e-08,78;UBERON:0009569,2.78e-08,112;UBERON:0007524,5.25e-08,73;UBERON:0003077,8.60e-08,72;UBERON:0007285,8.60e-08,72;UBERON:0002329,1.24e-07,71;UBERON:0003059,1.24e-07,71;UBERON:0007282,1.24e-07,71;UBERON:0004290,1.24e-07,71;UBERON:0009618,1.24e-07,71;UBERON:0007500,1.33e-07,59;UBERON:0001981,1.33e-07,59;UBERON:0004537,1.33e-07,59;UBERON:0006965,1.33e-07,59;UBERON:0000486,1.47e-07,83;UBERON:0004872,1.67e-07,83;UBERON:0002049,2.39e-07,78;UBERON:0007798,2.39e-07,78;UBERON:0000055,2.49e-07,68;UBERON:0001134,2.66e-07,62;UBERON:0002036,2.66e-07,62;UBERON:0003082,2.66e-07,62;UBERON:0002385,5.80e-07,64;UBERON:0001015,5.80e-07,64;UBERON:0000383,5.80e-07,64|phase1_expression=45.7829515761803,31.2586764880835,41.2996404001196,60.0439790118782,42.4613039705923,23.55314015071,35.4619829435635,37.271472532183,60.0726944859629,23.0989900311418,36.9834619025387,17.4753097704138,58.2925021884882,89.9781386019539,133.55314241835,43.7011345193654,53.03711846611,43.088295332855,43.4260190923551,65.2541607806976,80.1722716589914,56.4218498660558,26.9061827903193,17.2461775591834,19.3335664975996,24.4522898393444,19.622040878537,21.7241756425755,12.5876568591649,4.98978217526377,4.79929982279836,57.0041159176935,41.5664167913985,32.5383528946773,19.521734546236,0,24.6624369041272,40.4416648228271,20.4555336419545,36.4578262802631,5.15005590751826,44.6973259106192,7.98484259665978,12.6496467738221,13.9814099164859,13.3421233653299,16.2700325833979,17.2690512969167,15.4853185447552,11.2200033005639,15.369642391746,13.0065226438722,18.6162667597774,14.2006630388442,14.8969135253776,15.0593871634084,15.8285567033551,9.66310983113864,20.5076207888505,17.3301674621091,15.983428144976,11.2149442063483,13.7629923758926,10.2293940127847,15.0908804086864,14.7520158419696,8.71951148593805,12.5624332628372,11.9941071236646,14.1172749058326,17.5565855763677,13.9945501675275,14.8737322097216,24.5056132121852,4.03948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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64847 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26125 | |||
|TSSclassifier=W | |||
|UniProt=D6RC70,D6R947,Q8TB22 | |||
|association_with_transcript=0bp_to_ENST00000393244,ENST00000502911,ENST00000505456,ENST00000505559,ENST00000508598,ENST00000510917,ENST00000511605,ENST00000511845,ENST00000515526,NM_022827_5end | |||
|description=CAGE_peak_1_at_SPATA20_5end | |||
|id=chr17:48624510..48624571,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.19e-14!180;CL:0000222!4.04e-11!119;CL:0000220!8.27e-10!246;CL:0002321!2.42e-09!248;CL:0000057!3.49e-09!75;CL:0000183!1.55e-07!59;CL:0000680!4.97e-07!57;CL:0000056!4.97e-07!57;CL:0000355!4.97e-07!57;CL:0000192!5.97e-07!42;CL:0000514!5.97e-07!42;CL:0000066!6.34e-07!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.08e-11,121;CL:0002321,1.77e-09,250;CL:0000057,2.14e-09,76;CL:0000680,3.17e-07,58;CL:0000056,3.17e-07,58;CL:0000355,3.17e-07,58;CL:0000192,3.74e-07,43;CL:0000514,3.74e-07,43;CL:0000066,8.72e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p1@SPATA20 | |||
}} |
Revision as of 14:31, 11 September 2013
Short description: | p1@SPATA20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SPATA20_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000393244, ENST00000502911, ENST00000505456, ENST00000505559, ENST00000508598, ENST00000510917, ENST00000511605, ENST00000511845, ENST00000515526, NM_022827_5end |
EntrezGene: | SPATA20 |
HGNC: | 26125 |
UniProt: | D6RC70D6R947Q8TB22 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.08e-11 | 121 |
embryonic cell | 1.77e-09 | 250 |
fibroblast | 2.14e-09 | 76 |
muscle precursor cell | 3.17e-07 | 58 |
myoblast | 3.17e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.17e-07 | 58 |
smooth muscle cell | 3.74e-07 | 43 |
smooth muscle myoblast | 3.74e-07 | 43 |
epithelial cell | 8.72e-07 | 253 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.