FFCP PHASE1:Hg19::chr1:156052241..156052298,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=92312|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=33482|TSSclassifier=S|UniProt=A1L020|association_with_transcript=-452bp_to_ENST00000532414,NM_001093725,uc001fnd.3_5end|description=CAGE_peak_1_at_MEX3A_5end|id=chr1:156052241..156052298,-|ontology_enrichment_celltype=CL:0000066!2.06e-21!254;CL:0002321!2.31e-16!248;CL:0000220!1.12e-15!246;CL:0002319!6.93e-12!25;CL:0000133!9.35e-12!59;CL:0000221!1.25e-10!71;CL:0000333!9.14e-09!41;CL:0002139!1.21e-08!24;CL:0000115!1.16e-07!35;CL:0000095!1.83e-07!17;CL:0000123!1.83e-07!17;CL:0000071!2.69e-07!18;CL:0002546!2.69e-07!18;CL:0002078!5.78e-07!44|ontology_enrichment_celltype_v019=CL:0002319;3.90e-13;25!CL:0002139;2.00e-09;24!CL:0000095;5.14e-08;17!CL:0000071;6.84e-08;18!CL:0000115;3.95e-07;36|ontology_enrichment_celltype_v019_2=CL:0000066,5.14e-20,253;CL:0002321,9.84e-15,250;CL:0000133,3.80e-13,59;CL:0002319,4.87e-13,25;CL:0000221,6.18e-11,72;CL:0002139,1.28e-09,24;CL:0000333,1.33e-09,41;CL:0000115,7.56e-09,36;CL:0002078,2.58e-08,45;CL:0000071,4.63e-08,18;CL:0002546,4.63e-08,18;CL:0000095,5.57e-08,17;CL:0000123,5.57e-08,17;CL:0000047,6.62e-07,8|ontology_enrichment_development_v019=CL:0002546;6.84e-08;18!CL:0000133;7.38e-07;59|ontology_enrichment_disease=DOID:162!1.03e-15!235;DOID:14566!2.68e-15!239;DOID:0050687!2.25e-13!143;DOID:305!1.13e-08!106;DOID:3095!4.36e-08!22;DOID:2994!4.36e-08!22;DOID:0050686!5.47e-07!137;DOID:171!5.71e-07!10|ontology_enrichment_disease_v019=DOID:3095;1.02e-08;22!DOID:2994;1.02e-08;22!DOID:171;1.25e-07;10|ontology_enrichment_disease_v019_2=DOID:162,9.08e-12,235;DOID:0050687,3.97e-11,143;DOID:14566,6.62e-11,239;DOID:3095,3.89e-09,22;DOID:2994,3.89e-09,22;DOID:171,8.19e-08,10|ontology_enrichment_uberon=UBERON:0000119!1.57e-11!312;UBERON:0000483!3.05e-11!309;UBERON:0000487!1.66e-08!22;UBERON:0000490!7.76e-08!138;UBERON:0000475!1.54e-07!365;UBERON:0001986!2.69e-07!18;UBERON:0004638!2.69e-07!18;UBERON:0004852!2.69e-07!18;UBERON:0006914!2.91e-07!25|ontology_enrichment_uberon_v019=UBERON:0000490;8.33e-10;33!UBERON:0000487;3.04e-09;22!UBERON:0006914;2.26e-08;25!UBERON:0004638;6.84e-08;18!UBERON:0001986;6.84e-08;18!UBERON:0004852;6.84e-08;18!UBERON:0000970;2.04e-07;20!UBERON:0007625;2.73e-07;11!UBERON:0000019;4.55e-07;19!UBERON:0000047;4.55e-07;19!UBERON:0004088;4.55e-07;19!UBERON:0010230;4.55e-07;19|ontology_enrichment_uberon_v019_2=UBERON:0000487,1.86e-09,22;UBERON:0006914,1.47e-08,25;UBERON:0000119,3.78e-08,309;UBERON:0004638,4.63e-08,18;UBERON:0001986,4.63e-08,18;UBERON:0004852,4.63e-08,18;UBERON:0000483,6.90e-08,306;UBERON:0007625,2.92e-07,11|phase1_expression=0.908391896352783,0,0.281908808191942,1.0007329835313,0,0,0,0,0.261185628199839,5.16041266653169,2.79120467188971,2.18441372130172,2.90143676051299,2.10402800032079,0.994192127183747,0.672325146451775,1.80808358407193,2.19093027116212,2.92759679274304,5.0479633811483,3.67201244239655,6.26909442956176,9.15955158819382,11.9080749813409,9.79232588839462,1.45185470921107,1.14940825229924,1.41679406364623,0,0,1.39334510984468,0,1.8072355126695,0,0.46480320348181,0.284338464974843,4.11040615068786,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,1.84368859342554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0.289648807765598,4.87613732627923,2.01210257911091,1.15076305659177,0,1.00267582127178,1.15877215168659,0,0.486634870302636,8.31906391043797,7.76052891118974,7.64162635530197,0.982343066232845,1.09288586487763,1.48313777113772,0,0,0,0,0,0,2.98143611050058,2.58070378531837,5.55424802572151,2.82653970962005,3.77549492588915,6.32771496462155,5.43386912995707,3.6178346283706,2.84613010149368,3.01248551488203,2.81980521976403,6.84244895146661,4.14905497831888,0.367663080345869,12.1521292182264,4.46498641420399,4.04152870727106,3.0405099730497,12.2653309972707,3.79706263827252,10.808902891894,0,0,1.3082821564276,0,0.506522046658319,0.529636723252875,0.573673241497627,1.77334191099179,0.560677600142307,3.20246987189115,1.2333377420858,0.622422070799533,1.0776853765575,1.47115712802113,1.21085942115945,2.30470369792,2.57753575017176,0,0.570471821544449,0.298897361103602,1.76151747965647,1.61872944368132,1.12360645361799,1.42907919878425,4.42203542322365,0.516628905878827,0,0.741800787835671,0.910161361938026,1.43723628363248,4.54507507675979,5.75545191411035,1.38532057742091,0.877955241761676,0,0.751190294532984,1.81491493056034,0.717558542755448,0.427114777637135,0.423863802319124,0.300091096084402,1.64884046781502,0.772921620136887,0.930584281657949,0.337552664482532,0.584622030967192,0.757301322732344,0.828449087780694,0.323292113637624,0,1.10827308050404,1.86516651541536,0,1.36373060295417,0.286804595389004,5.2448693635726,7.55419679432466,7.66880022938821,6.21966330092223,8.32658807889574,1.09493207722749,0,0.643240938192885,4.14404764057442,0.4643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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=92312 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33482 | |||
|TSSclassifier=S | |||
|UniProt=A1L020 | |||
|association_with_transcript=-452bp_to_ENST00000532414,NM_001093725,uc001fnd.3_5end | |||
|description=CAGE_peak_1_at_MEX3A_5end | |||
|id=chr1:156052241..156052298,- | |||
|ontology_enrichment_celltype=CL:0000066!2.06e-21!254;CL:0002321!2.31e-16!248;CL:0000220!1.12e-15!246;CL:0002319!6.93e-12!25;CL:0000133!9.35e-12!59;CL:0000221!1.25e-10!71;CL:0000333!9.14e-09!41;CL:0002139!1.21e-08!24;CL:0000115!1.16e-07!35;CL:0000095!1.83e-07!17;CL:0000123!1.83e-07!17;CL:0000071!2.69e-07!18;CL:0002546!2.69e-07!18;CL:0002078!5.78e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0002319;3.90e-13;25!CL:0002139;2.00e-09;24!CL:0000095;5.14e-08;17!CL:0000071;6.84e-08;18!CL:0000115;3.95e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.14e-20,253;CL:0002321,9.84e-15,250;CL:0000133,3.80e-13,59;CL:0002319,4.87e-13,25;CL:0000221,6.18e-11,72;CL:0002139,1.28e-09,24;CL:0000333,1.33e-09,41;CL:0000115,7.56e-09,36;CL:0002078,2.58e-08,45;CL:0000071,4.63e-08,18;CL:0002546,4.63e-08,18;CL:0000095,5.57e-08,17;CL:0000123,5.57e-08,17;CL:0000047,6.62e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002546;6.84e-08;18!CL:0000133;7.38e-07;59 | |||
|ontology_enrichment_disease=DOID:162!1.03e-15!235;DOID:14566!2.68e-15!239;DOID:0050687!2.25e-13!143;DOID:305!1.13e-08!106;DOID:3095!4.36e-08!22;DOID:2994!4.36e-08!22;DOID:0050686!5.47e-07!137;DOID:171!5.71e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.02e-08;22!DOID:2994;1.02e-08;22!DOID:171;1.25e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:162,9.08e-12,235;DOID:0050687,3.97e-11,143;DOID:14566,6.62e-11,239;DOID:3095,3.89e-09,22;DOID:2994,3.89e-09,22;DOID:171,8.19e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0000119!1.57e-11!312;UBERON:0000483!3.05e-11!309;UBERON:0000487!1.66e-08!22;UBERON:0000490!7.76e-08!138;UBERON:0000475!1.54e-07!365;UBERON:0001986!2.69e-07!18;UBERON:0004638!2.69e-07!18;UBERON:0004852!2.69e-07!18;UBERON:0006914!2.91e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000490;8.33e-10;33!UBERON:0000487;3.04e-09;22!UBERON:0006914;2.26e-08;25!UBERON:0004638;6.84e-08;18!UBERON:0001986;6.84e-08;18!UBERON:0004852;6.84e-08;18!UBERON:0000970;2.04e-07;20!UBERON:0007625;2.73e-07;11!UBERON:0000019;4.55e-07;19!UBERON:0000047;4.55e-07;19!UBERON:0004088;4.55e-07;19!UBERON:0010230;4.55e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000487,1.86e-09,22;UBERON:0006914,1.47e-08,25;UBERON:0000119,3.78e-08,309;UBERON:0004638,4.63e-08,18;UBERON:0001986,4.63e-08,18;UBERON:0004852,4.63e-08,18;UBERON:0000483,6.90e-08,306;UBERON:0007625,2.92e-07,11 | |||
|phase1_expression=0.908391896352783,0,0.281908808191942,1.0007329835313,0,0,0,0,0.261185628199839,5.16041266653169,2.79120467188971,2.18441372130172,2.90143676051299,2.10402800032079,0.994192127183747,0.672325146451775,1.80808358407193,2.19093027116212,2.92759679274304,5.0479633811483,3.67201244239655,6.26909442956176,9.15955158819382,11.9080749813409,9.79232588839462,1.45185470921107,1.14940825229924,1.41679406364623,0,0,1.39334510984468,0,1.8072355126695,0,0.46480320348181,0.284338464974843,4.11040615068786,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,1.84368859342554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0.289648807765598,4.87613732627923,2.01210257911091,1.15076305659177,0,1.00267582127178,1.15877215168659,0,0.486634870302636,8.31906391043797,7.76052891118974,7.64162635530197,0.982343066232845,1.09288586487763,1.48313777113772,0,0,0,0,0,0,2.98143611050058,2.58070378531837,5.55424802572151,2.82653970962005,3.77549492588915,6.32771496462155,5.43386912995707,3.6178346283706,2.84613010149368,3.01248551488203,2.81980521976403,6.84244895146661,4.14905497831888,0.367663080345869,12.1521292182264,4.46498641420399,4.04152870727106,3.0405099730497,12.2653309972707,3.79706263827252,10.808902891894,0,0,1.3082821564276,0,0.506522046658319,0.529636723252875,0.573673241497627,1.77334191099179,0.560677600142307,3.20246987189115,1.2333377420858,0.622422070799533,1.0776853765575,1.47115712802113,1.21085942115945,2.30470369792,2.57753575017176,0,0.570471821544449,0.298897361103602,1.76151747965647,1.61872944368132,1.12360645361799,1.42907919878425,4.42203542322365,0.516628905878827,0,0.741800787835671,0.910161361938026,1.43723628363248,4.54507507675979,5.75545191411035,1.38532057742091,0.877955241761676,0,0.751190294532984,1.81491493056034,0.717558542755448,0.427114777637135,0.423863802319124,0.300091096084402,1.64884046781502,0.772921620136887,0.930584281657949,0.337552664482532,0.584622030967192,0.757301322732344,0.828449087780694,0.323292113637624,0,1.10827308050404,1.86516651541536,0,1.36373060295417,0.286804595389004,5.2448693635726,7.55419679432466,7.66880022938821,6.21966330092223,8.32658807889574,1.09493207722749,0,0.643240938192885,4.14404764057442,0.464367928031979,0,0.709840800239063,1.01150814046861,1.68707720918437,0.992645754591546,0.871517776369625,0.71181185733329,0.134831308160164,1.17732879075208,1.15424147083917,2.95262181849859,4.20725321410337,1.6462960453256,5.88034845542168,0,1.96565443335525,0.590789906681404,1.7658523976586,4.67356066463832,3.60292401626904,2.74375713521564,0,0.703702806881416,3.33318402570707,2.93227474779292,0,4.3299402607582,6.37617227362923,4.22671299248958,2.7429625074604,2.31492756288305,2.28304982681518,1.58040879591855,1.71697232418975,0,0,0,0,0.839910640994298,0.708875486211932,0.447792613514241,0.290633938513962,0.766765358330422,0.492663237895943,0,0.207328115540772,0.144119953416961,0.50496973370552,0.63497894292169,1.90994212779139,1.17217447210047,3.4214489204541,2.26220483947312,0.901029173531752,2.5724378936752,1.12131084345361,1.30788020649984,2.933531432838,1.29271715757778,0,0.845302752556,1.32969058292435,0,3.34369586540785,4.25547396069835,2.66422179016099,1.14382394926518,0,1.64648067356154,0.977208552881205,0.710783897485092,1.58390374586686,1.20575750823834,3.48613383440118,1.09970290300263,0,0,0,0.958499421966331,2.29723871668228,0,0.723906533337896,0.61642896765115,0.895304816199478,0,0,0,0,9.65559572045361,13.0139853857622,20.1055091322201,28.6452813721736,18.5002237979417,0,0,0,2.08575535922538,2.00068208423871,0.813795071099207,0,0.178428988797162,0.315404830067869,0.234282829985426,0.902838299183157,0,0,4.64957918974806,2.76553752812555,1.04260337361699,1.56640925970192,2.05886054286514,0,0,0,0.303127571446259,6.65741758041988,5.74541557326393,0,0,1.12264037773229,0.384417447767103,0.511707249066704,0.482561763430822,0,1.07946785661859,1.06537035187876,1.23190734020714,1.55776328755086,0.697262270759755,6.40555082835598,7.01772646061497,1.28913384510255,2.06666006696292,0.546273504020151,0.786746489756545,10.8287907097779,8.93377910411211,9.41219723012226,5.84556898613043,9.81630148703744,0,0.680374821106063,4.96606607034921,3.08454505380579,4.06419656315779,9.03041592938736,1.27438136522519,0.831076008928724,12.536986264442,0,0.261435451024901,6.41125312790973,10.8244833080903,5.20605431462885,0.309123034943167,12.270308285658,8.33345949197939,1.72279661398852,5.85054221432869,1.6068392984416,6.67027956215642,1.84858340537573,0.921022048356777,1.65403886981437,1.93356440762893,4.0604674295984,3.74997160630844,6.58837063785856,0.495854746082934,0.960950336825531,1.14851441245126,0.50578890427775,0.464845549297286,0,0,2.7723022215848,2.12922412126809,0,1.29726953372744,0.429374660225974,1.86079184679834,1.2655176988749,0.571890581771475,2.303080121802,0,0.318203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| |||
|short_description=p1@MEX3A | |||
}} |
Revision as of 00:49, 12 September 2013
Short description: | p1@MEX3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_MEX3A_5end |
Coexpression cluster: | NA |
Association with transcript: | -452bp_to_ENST00000532414, NM_001093725, uc001fnd.3_5end |
EntrezGene: | MEX3A |
HGNC: | 33482 |
UniProt: | A1L020 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.14e-20 | 253 |
embryonic cell | 9.84e-15 | 250 |
neurectodermal cell | 3.80e-13 | 59 |
neural cell | 4.87e-13 | 25 |
ectodermal cell | 6.18e-11 | 72 |
endothelial cell of vascular tree | 1.28e-09 | 24 |
migratory neural crest cell | 1.33e-09 | 41 |
endothelial cell | 7.56e-09 | 36 |
meso-epithelial cell | 2.58e-08 | 45 |
blood vessel endothelial cell | 4.63e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.63e-08 | 18 |
neuron associated cell | 5.57e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.57e-08 | 17 |
neuronal stem cell | 6.62e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
simple squamous epithelium | 1.86e-09 | 22 |
squamous epithelium | 1.47e-08 | 25 |
cell layer | 3.78e-08 | 309 |
blood vessel endothelium | 4.63e-08 | 18 |
endothelium | 4.63e-08 | 18 |
cardiovascular system endothelium | 4.63e-08 | 18 |
epithelium | 6.90e-08 | 306 |
pigment epithelium of eye | 2.92e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
cancer | 9.08e-12 | 235 |
cell type cancer | 3.97e-11 | 143 |
disease of cellular proliferation | 6.62e-11 | 239 |
germ cell and embryonal cancer | 3.89e-09 | 22 |
germ cell cancer | 3.89e-09 | 22 |
neuroectodermal tumor | 8.19e-08 | 10 |
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