FFCP PHASE1:Hg19::chr1:29138600..29138609,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4985|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8153|TSSclassifier=S|UniProt=P41143|association_with_transcript=-44bp_to_ENST00000234961,NM_000911,uc001brf.1_5end|coexpression_cluster_id=C53|description=CAGE_peak_4_at_OPRD1_5end|id=chr1:29138600..29138609,+|ontology_enrichment_celltype=CL:0002322!1.67e-13!5;CL:0000080!2.53e-07!6;CL:0000148!6.29e-07!10;CL:0000541!6.29e-07!10|ontology_enrichment_celltype_v019=CL:0000333;3.00e-40;5!CL:0002321;3.04e-14;15|ontology_enrichment_celltype_v019_2=CL:0000333,2.84e-11,41;CL:0000133,3.34e-08,59;CL:0000221,6.64e-07,72|ontology_enrichment_development_v019=UBERON:0006601;2.49e-07;82|ontology_enrichment_disease=DOID:169!1.80e-07!6|ontology_enrichment_disease_v019=DOID:169;9.08e-34;6!DOID:171;8.98e-21;10!DOID:3095;4.64e-10;22!DOID:2994;4.64e-10;22|ontology_enrichment_disease_v019_2=DOID:169,9.87e-34,6;DOID:171,9.44e-21,10;DOID:3095,4.74e-10,22;DOID:2994,4.74e-10,22|ontology_enrichment_uberon=UBERON:0002619!5.11e-33!22;UBERON:0001950!1.95e-31!20;UBERON:0001869!5.46e-29!32;UBERON:0000956!7.77e-29!25;UBERON:0000203!7.77e-29!25;UBERON:0002791!5.03e-28!33;UBERON:0002020!4.08e-27!34;UBERON:0003528!4.08e-27!34;UBERON:0001893!4.08e-27!34;UBERON:0002780!5.73e-22!41;UBERON:0001890!5.73e-22!41;UBERON:0006240!5.73e-22!41;UBERON:0000073!1.59e-21!94;UBERON:0001016!1.59e-21!94;UBERON:0003080!2.27e-21!42;UBERON:0001049!3.07e-19!57;UBERON:0005068!3.07e-19!57;UBERON:0006241!3.07e-19!57;UBERON:0007135!3.07e-19!57;UBERON:0001017!4.55e-19!82;UBERON:0000955!5.23e-19!69;UBERON:0006238!5.23e-19!69;UBERON:0002616!1.87e-18!59;UBERON:0005743!5.81e-18!86;UBERON:0002021!1.28e-14!5;UBERON:0002771!9.34e-14!3;UBERON:0003056!1.09e-13!61;UBERON:0001871!3.03e-13!7;UBERON:0000200!1.18e-11!6;UBERON:0003075!1.96e-11!86;UBERON:0007284!1.96e-11!86;UBERON:0007023!4.03e-11!115;UBERON:0000033!4.08e-11!123;UBERON:0002346!9.41e-11!90;UBERON:0000153!2.24e-10!129;UBERON:0007811!2.24e-10!129;UBERON:0004121!1.39e-09!169;UBERON:0000924!3.08e-09!173;UBERON:0006601!3.08e-09!173;UBERON:0000013!6.77e-09!5;UBERON:0002410!6.77e-09!5;UBERON:0000349!5.65e-08!5;UBERON:0001872!7.56e-08!5|ontology_enrichment_uberon_v019=UBERON:0000013;3.00e-40;5!UBERON:0002410;3.00e-40;5!UBERON:0000010;6.07e-23;8!UBERON:0002021;3.42e-11;5|ontology_enrichment_uberon_v019_2=UBERON:0000013,3.31e-40,5;UBERON:0002410,3.31e-40,5;UBERON:0000010,6.41e-23,8;UBERON:0002021,3.26e-11,5;UBERON:0001016,1.88e-09,89|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.988511511572023,0.730953646538188,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0.514784993585894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0.137539436597234,0.415440338029185,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0.366078794705889,0.250381861413,0,0.110929051536852,0,3.73541314327823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639471856518258,2.04867141653695,0,1.09209638192014,0,0,0,0,0,0,0,0,0,0.192687675289379,1.41696576325585,0.478901577171454,0.41023272848151,0,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.40781839786099,0.131545547125698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0.452888530700021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p4@OPRD1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=4985 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8153 | |||
|TSSclassifier=S | |||
|UniProt=P41143 | |||
|association_with_transcript=-44bp_to_ENST00000234961,NM_000911,uc001brf.1_5end | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_4_at_OPRD1_5end | |||
|id=chr1:29138600..29138609,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.67e-13!5;CL:0000080!2.53e-07!6;CL:0000148!6.29e-07!10;CL:0000541!6.29e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000333;3.00e-40;5!CL:0002321;3.04e-14;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000333,2.84e-11,41;CL:0000133,3.34e-08,59;CL:0000221,6.64e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.49e-07;82 | |||
|ontology_enrichment_disease=DOID:169!1.80e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:169;9.08e-34;6!DOID:171;8.98e-21;10!DOID:3095;4.64e-10;22!DOID:2994;4.64e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,9.87e-34,6;DOID:171,9.44e-21,10;DOID:3095,4.74e-10,22;DOID:2994,4.74e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0002619!5.11e-33!22;UBERON:0001950!1.95e-31!20;UBERON:0001869!5.46e-29!32;UBERON:0000956!7.77e-29!25;UBERON:0000203!7.77e-29!25;UBERON:0002791!5.03e-28!33;UBERON:0002020!4.08e-27!34;UBERON:0003528!4.08e-27!34;UBERON:0001893!4.08e-27!34;UBERON:0002780!5.73e-22!41;UBERON:0001890!5.73e-22!41;UBERON:0006240!5.73e-22!41;UBERON:0000073!1.59e-21!94;UBERON:0001016!1.59e-21!94;UBERON:0003080!2.27e-21!42;UBERON:0001049!3.07e-19!57;UBERON:0005068!3.07e-19!57;UBERON:0006241!3.07e-19!57;UBERON:0007135!3.07e-19!57;UBERON:0001017!4.55e-19!82;UBERON:0000955!5.23e-19!69;UBERON:0006238!5.23e-19!69;UBERON:0002616!1.87e-18!59;UBERON:0005743!5.81e-18!86;UBERON:0002021!1.28e-14!5;UBERON:0002771!9.34e-14!3;UBERON:0003056!1.09e-13!61;UBERON:0001871!3.03e-13!7;UBERON:0000200!1.18e-11!6;UBERON:0003075!1.96e-11!86;UBERON:0007284!1.96e-11!86;UBERON:0007023!4.03e-11!115;UBERON:0000033!4.08e-11!123;UBERON:0002346!9.41e-11!90;UBERON:0000153!2.24e-10!129;UBERON:0007811!2.24e-10!129;UBERON:0004121!1.39e-09!169;UBERON:0000924!3.08e-09!173;UBERON:0006601!3.08e-09!173;UBERON:0000013!6.77e-09!5;UBERON:0002410!6.77e-09!5;UBERON:0000349!5.65e-08!5;UBERON:0001872!7.56e-08!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;3.00e-40;5!UBERON:0002410;3.00e-40;5!UBERON:0000010;6.07e-23;8!UBERON:0002021;3.42e-11;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,3.31e-40,5;UBERON:0002410,3.31e-40,5;UBERON:0000010,6.41e-23,8;UBERON:0002021,3.26e-11,5;UBERON:0001016,1.88e-09,89 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.988511511572023,0.730953646538188,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0.514784993585894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0.137539436597234,0.415440338029185,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0.366078794705889,0.250381861413,0,0.110929051536852,0,3.73541314327823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639471856518258,2.04867141653695,0,1.09209638192014,0,0,0,0,0,0,0,0,0,0.192687675289379,1.41696576325585,0.478901577171454,0.41023272848151,0,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.40781839786099,0.131545547125698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0.452888530700021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@OPRD1 | |||
}} |
Revision as of 05:09, 12 September 2013
Short description: | p4@OPRD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_OPRD1_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | -44bp_to_ENST00000234961, NM_000911, uc001brf.1_5end |
EntrezGene: | OPRD1 |
HGNC: | 8153 |
UniProt: | P41143 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 2.84e-11 | 41 |
neurectodermal cell | 3.34e-08 | 59 |
ectodermal cell | 6.64e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 3.31e-40 | 5 |
autonomic nervous system | 3.31e-40 | 5 |
peripheral nervous system | 6.41e-23 | 8 |
occipital lobe | 3.26e-11 | 5 |
nervous system | 1.88e-09 | 89 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 9.87e-34 | 6 |
neuroectodermal tumor | 9.44e-21 | 10 |
germ cell and embryonal cancer | 4.74e-10 | 22 |
germ cell cancer | 4.74e-10 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.