FFCP PHASE1:Hg19::chr2:216249608..216249613,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2335|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=3778|TSSclassifier=S|UniProt=P02751|association_with_transcript=80bp_to_U42458_5end|coexpression_cluster_id=C79|description=CAGE_peak_68_at_FN1_5end|id=chr2:216249608..216249613,-|ontology_enrichment_celltype=CL:0000055!5.44e-31!180;CL:0000057!8.74e-27!75;CL:0002371!2.25e-17!591;CL:0000144!7.59e-15!625;CL:0000048!2.22e-14!430;CL:0000723!1.41e-13!436;CL:0000034!6.60e-13!444;CL:0002620!1.17e-10!23;CL:0000548!1.62e-10!679;CL:0000004!1.62e-10!679;CL:0000255!1.62e-10!679;CL:0000012!3.30e-10!682;CL:0000680!1.39e-09!57;CL:0000056!1.39e-09!57;CL:0000355!1.39e-09!57;CL:0000183!2.73e-09!59;CL:0002320!4.13e-09!365;CL:0002494!2.90e-08!16;CL:0000187!6.99e-08!54;CL:0002334!9.72e-08!12;CL:0000134!9.92e-08!358;CL:0000219!1.77e-07!390|ontology_enrichment_celltype_v019=CL:0002494;3.95e-10;16!CL:0000680;4.91e-10;7!CL:0000515;4.05e-09;3!CL:0002580;9.56e-09;3!CL:0002548;1.01e-07;6!CL:0002334;1.46e-07;12!CL:0002549;2.00e-07;2!CL:0000056;6.27e-07;4|ontology_enrichment_celltype_v019_2=CL:0000048,2.97e-11,427;CL:0000723,6.71e-11,433;CL:0000057,7.56e-11,76;CL:0000034,1.92e-10,441;CL:0002494,2.68e-10,16;CL:0000680,2.24e-09,58;CL:0000056,2.24e-09,58;CL:0000355,2.24e-09,58;CL:0002580,1.42e-08,3;CL:0002548,1.14e-07,6;CL:0002334,2.12e-07,12;CL:0002549,2.18e-07,2|ontology_enrichment_development_v019=CL:0000515;6.27e-07;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!1.33e-11!83;UBERON:0002329!1.33e-11!83;UBERON:0003077!1.33e-11!83;UBERON:0003059!1.33e-11!83;UBERON:0007282!1.33e-11!83;UBERON:0009618!1.33e-11!83;UBERON:0007285!1.33e-11!83;UBERON:0004290!3.85e-10!70;UBERON:0005256!1.93e-09!143;UBERON:0002384!2.65e-09!375;UBERON:0001134!2.65e-08!61;UBERON:0002036!2.65e-08!61;UBERON:0003082!2.65e-08!61;UBERON:0000486!2.99e-08!82;UBERON:0000948!8.95e-08!24;UBERON:0005498!8.95e-08!24;UBERON:0004140!8.95e-08!24;UBERON:0009881!8.95e-08!24;UBERON:0004141!8.95e-08!24;UBERON:0003084!8.95e-08!24;UBERON:0007005!8.95e-08!24;UBERON:0004139!8.95e-08!24;UBERON:0004291!8.95e-08!24;UBERON:0002385!9.78e-08!63;UBERON:0001015!9.78e-08!63;UBERON:0000383!9.78e-08!63;UBERON:0002100!4.00e-07!216;UBERON:0004923!7.12e-07!57;UBERON:0002097!8.46e-07!40|ontology_enrichment_uberon_v019=UBERON:0001134;1.16e-07;16!UBERON:0002036;1.16e-07;16!UBERON:0005629;2.00e-07;2!UBERON:0005358;2.00e-07;2!UBERON:0001886;2.00e-07;2!UBERON:0004086;2.00e-07;2!UBERON:0005282;2.00e-07;2!UBERON:0005281;2.00e-07;2!UBERON:0000948;5.49e-07;22!UBERON:0002385;7.53e-07;31!UBERON:0001015;7.53e-07;31!UBERON:0000383;7.53e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.27e-08,73;UBERON:0001134,1.60e-08,62;UBERON:0002036,1.60e-08,62;UBERON:0003082,1.60e-08,62;UBERON:0002385,3.90e-08,64;UBERON:0001015,3.90e-08,64;UBERON:0000383,3.90e-08,64;UBERON:0000948,5.63e-08,24;UBERON:0005498,5.63e-08,24;UBERON:0004140,5.63e-08,24;UBERON:0009881,5.63e-08,24;UBERON:0004141,5.63e-08,24;UBERON:0003084,5.63e-08,24;UBERON:0007005,5.63e-08,24;UBERON:0004139,5.63e-08,24;UBERON:0004291,5.63e-08,24;UBERON:0002329,5.79e-08,71;UBERON:0003059,5.79e-08,71;UBERON:0007282,5.79e-08,71;UBERON:0004290,5.79e-08,71;UBERON:0009618,5.79e-08,71;UBERON:0003077,8.49e-08,72;UBERON:0007285,8.49e-08,72;UBERON:0005629,2.18e-07,2;UBERON:0005358,2.18e-07,2;UBERON:0001886,2.18e-07,2;UBERON:0004086,2.18e-07,2;UBERON:0005282,2.18e-07,2;UBERON:0005281,2.18e-07,2;UBERON:0000486,3.78e-07,83;UBERON:0005256,6.49e-07,122;UBERON:0007100,6.65e-07,27;UBERON:0007503,6.81e-07,78|phase1_expression=0.54503513781167,1.2846031433459,0.563817616383885,5.00366491765652,0.893922188854576,0.872338524100369,0,0,0,0.491467873003018,0,0.873765488520689,1.84636884759917,0.123766352960047,0.662794751455832,0.672325146451775,1.20538905604795,0,0,0.246242116153576,0.408001382488506,1.25381888591235,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.01210257911091,0.12786256184353,0,0.50133791063589,0.434539556882471,4.7717156823066,10.705967146658,0,0.665188192387692,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0.436094052142534,2.48485975847659,0.633152558322899,1.58891016975863,3.44203944898576,0.709336764396714,0,1.06748995729705,0.74000264525148,1.24484414159907,3.90660949002095,1.79808093424805,3.17850598054356,4.60940739583999,0.234321431833797,0.312160076830321,0,0.597794722207204,0.822041490506354,0.809364721840658,0.98315564691574,0.61246251376468,0.122834317311768,0.929932030581889,0,0.247266929278557,0.910161361938026,0,0.336672227908132,0.250237039743928,0.554128230968366,0,0.30648779579902,0,0.680593098960126,1.61450672119976,0.8542295552742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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2335 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=3778 | |||
|TSSclassifier=S | |||
|UniProt=P02751 | |||
|association_with_transcript=80bp_to_U42458_5end | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_68_at_FN1_5end | |||
|id=chr2:216249608..216249613,- | |||
|ontology_enrichment_celltype=CL:0000055!5.44e-31!180;CL:0000057!8.74e-27!75;CL:0002371!2.25e-17!591;CL:0000144!7.59e-15!625;CL:0000048!2.22e-14!430;CL:0000723!1.41e-13!436;CL:0000034!6.60e-13!444;CL:0002620!1.17e-10!23;CL:0000548!1.62e-10!679;CL:0000004!1.62e-10!679;CL:0000255!1.62e-10!679;CL:0000012!3.30e-10!682;CL:0000680!1.39e-09!57;CL:0000056!1.39e-09!57;CL:0000355!1.39e-09!57;CL:0000183!2.73e-09!59;CL:0002320!4.13e-09!365;CL:0002494!2.90e-08!16;CL:0000187!6.99e-08!54;CL:0002334!9.72e-08!12;CL:0000134!9.92e-08!358;CL:0000219!1.77e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0002494;3.95e-10;16!CL:0000680;4.91e-10;7!CL:0000515;4.05e-09;3!CL:0002580;9.56e-09;3!CL:0002548;1.01e-07;6!CL:0002334;1.46e-07;12!CL:0002549;2.00e-07;2!CL:0000056;6.27e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.97e-11,427;CL:0000723,6.71e-11,433;CL:0000057,7.56e-11,76;CL:0000034,1.92e-10,441;CL:0002494,2.68e-10,16;CL:0000680,2.24e-09,58;CL:0000056,2.24e-09,58;CL:0000355,2.24e-09,58;CL:0002580,1.42e-08,3;CL:0002548,1.14e-07,6;CL:0002334,2.12e-07,12;CL:0002549,2.18e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000515;6.27e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.33e-11!83;UBERON:0002329!1.33e-11!83;UBERON:0003077!1.33e-11!83;UBERON:0003059!1.33e-11!83;UBERON:0007282!1.33e-11!83;UBERON:0009618!1.33e-11!83;UBERON:0007285!1.33e-11!83;UBERON:0004290!3.85e-10!70;UBERON:0005256!1.93e-09!143;UBERON:0002384!2.65e-09!375;UBERON:0001134!2.65e-08!61;UBERON:0002036!2.65e-08!61;UBERON:0003082!2.65e-08!61;UBERON:0000486!2.99e-08!82;UBERON:0000948!8.95e-08!24;UBERON:0005498!8.95e-08!24;UBERON:0004140!8.95e-08!24;UBERON:0009881!8.95e-08!24;UBERON:0004141!8.95e-08!24;UBERON:0003084!8.95e-08!24;UBERON:0007005!8.95e-08!24;UBERON:0004139!8.95e-08!24;UBERON:0004291!8.95e-08!24;UBERON:0002385!9.78e-08!63;UBERON:0001015!9.78e-08!63;UBERON:0000383!9.78e-08!63;UBERON:0002100!4.00e-07!216;UBERON:0004923!7.12e-07!57;UBERON:0002097!8.46e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;1.16e-07;16!UBERON:0002036;1.16e-07;16!UBERON:0005629;2.00e-07;2!UBERON:0005358;2.00e-07;2!UBERON:0001886;2.00e-07;2!UBERON:0004086;2.00e-07;2!UBERON:0005282;2.00e-07;2!UBERON:0005281;2.00e-07;2!UBERON:0000948;5.49e-07;22!UBERON:0002385;7.53e-07;31!UBERON:0001015;7.53e-07;31!UBERON:0000383;7.53e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.27e-08,73;UBERON:0001134,1.60e-08,62;UBERON:0002036,1.60e-08,62;UBERON:0003082,1.60e-08,62;UBERON:0002385,3.90e-08,64;UBERON:0001015,3.90e-08,64;UBERON:0000383,3.90e-08,64;UBERON:0000948,5.63e-08,24;UBERON:0005498,5.63e-08,24;UBERON:0004140,5.63e-08,24;UBERON:0009881,5.63e-08,24;UBERON:0004141,5.63e-08,24;UBERON:0003084,5.63e-08,24;UBERON:0007005,5.63e-08,24;UBERON:0004139,5.63e-08,24;UBERON:0004291,5.63e-08,24;UBERON:0002329,5.79e-08,71;UBERON:0003059,5.79e-08,71;UBERON:0007282,5.79e-08,71;UBERON:0004290,5.79e-08,71;UBERON:0009618,5.79e-08,71;UBERON:0003077,8.49e-08,72;UBERON:0007285,8.49e-08,72;UBERON:0005629,2.18e-07,2;UBERON:0005358,2.18e-07,2;UBERON:0001886,2.18e-07,2;UBERON:0004086,2.18e-07,2;UBERON:0005282,2.18e-07,2;UBERON:0005281,2.18e-07,2;UBERON:0000486,3.78e-07,83;UBERON:0005256,6.49e-07,122;UBERON:0007100,6.65e-07,27;UBERON:0007503,6.81e-07,78 | |||
|phase1_expression=0.54503513781167,1.2846031433459,0.563817616383885,5.00366491765652,0.893922188854576,0.872338524100369,0,0,0,0.491467873003018,0,0.873765488520689,1.84636884759917,0.123766352960047,0.662794751455832,0.672325146451775,1.20538905604795,0,0,0.246242116153576,0.408001382488506,1.25381888591235,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.01210257911091,0.12786256184353,0,0.50133791063589,0.434539556882471,4.7717156823066,10.705967146658,0,0.665188192387692,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0.436094052142534,2.48485975847659,0.633152558322899,1.58891016975863,3.44203944898576,0.709336764396714,0,1.06748995729705,0.74000264525148,1.24484414159907,3.90660949002095,1.79808093424805,3.17850598054356,4.60940739583999,0.234321431833797,0.312160076830321,0,0.597794722207204,0.822041490506354,0.809364721840658,0.98315564691574,0.61246251376468,0.122834317311768,0.929932030581889,0,0.247266929278557,0.910161361938026,0,0.336672227908132,0.250237039743928,0.554128230968366,0,0.30648779579902,0,0.680593098960126,1.61450672119976,0.85422955527427,1.48352330811693,1.20036438433761,0.618315175430633,0.772921620136887,1.11670113798954,0.843881661206331,0.487185025805993,2.01947019395292,0.0920498986422993,0.484938170456436,0.710019185033229,0.806016785821122,0,0,0,0,0,0,0,0.10366105501537,0,0,0,1.28648187638577,0,0.928735856063958,1.44375896333917,0,0,0,0,0,0,0,0,0,0,2.80483547606892,2.057870056657,2.94017422771084,1.26755034821831,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0.358234090811393,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.112131084345361,1.74384027533312,0,0.129271715757778,3.57656445851882,0.845302752556,0,0,0.257207374262142,0,1.3321108950805,0,2.71310802695722,0,0,0.355391948742546,0,0,1.74306691720059,0,0,0,2.10833939483032,0.958499421966331,1.14861935834114,0,1.01346914667305,2.4657158706046,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0.542530047399471,0.415941723061614,1.24900292158013,0.630809660135739,0.468565659970853,0,0,0,0,0.737476674166813,0.173767228936166,1.56640925970192,0.686286847621712,0,0,0,0,0,0.604780586659361,1.24053903909388,1.07423381301644,1.68396056659844,0.256278298511402,1.02341449813341,1.28683136914886,1.48418066444991,0.308419387605311,0.532685175939381,0.164254312027618,0,0.581051892299796,0,0,0,0,0.546273504020151,0,0,0,0,0,0,0,0.170093705276516,0.215915916102139,0,0.541892875087706,0,0,0,0.223874754722178,0,0,0,0,0.325378394664303,0,0.0915694648183434,0.082509499920588,0,0,0,0.096670718292122,0.462145851343933,1.22802939780904,1.10269257987624,1.18162269355101,2.0302337147992,0.681813019328807,0.0890320356467374,0.661139661443912,0.576570202095319,0.510450849978337,0,0,3.46293581513704,0.6970372701606,0,0,0,0,0,0.744316738719335,0.632758849437452,1.33441135746677,0,0.855877976067841,0,0.78494864019923,0.179872457583315,1.09814811894422,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,0,0,0,1.13008116620243,0,0,0,1.73632660280006,1.31178950409327,0.202910376962704,0.6196469961995,0,0,0.294747123039363,1.07001315444375,0,0,0.329294892959902,0,0.349934720244983,0,0,0,0,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,0,0.921482106297696,0,0,1.44701316529778,0,0,0,0,0,0,0,2.79935628895627,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455768223388005,0,0,0,7.33702667383415,0.274792780205587,23.9865649208386,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0.137041924646751,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0.859530882839914,0,0.558564802544508,0,0,0,0,0,0.0671834724867263,0.720599767084807,1.16495949527454,0.157566364614447,0,0.13480708770837,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35857467866569,0,0,0,0,0,0.864221491201268,0.326587360109409,0,0,0.851940108927109,0,0,0,0,0,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447764408660622,0.934853239388898,0.554805861502613,1.89403005275089,1.76097531226803,0,1.83072054717539,1.81477108515887,0.777186002913902,0.147855149989634,0.63718706865481,0,0.776314784381297,0.414706207840855,2.12673371646396,0.521745061811734,0,0,0.406870733204662,0.363697318405119,0.537052785212442,0.928067519756987,0.398095888698616,0.400027764663154,0.343395705182793,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0.943595651135378,0,0,0,0.123935764259002,0,0.636008701306837,0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| |||
|short_description=p68@FN1 | |||
}} |
Revision as of 16:34, 12 September 2013
Short description: | p68@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_68_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | 80bp_to_U42458_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | P02751 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 2.97e-11 | 427 |
somatic stem cell | 6.71e-11 | 433 |
fibroblast | 7.56e-11 | 76 |
stem cell | 1.92e-10 | 441 |
cardiocyte | 2.68e-10 | 16 |
muscle precursor cell | 2.24e-09 | 58 |
myoblast | 2.24e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.24e-09 | 58 |
preadipocyte of the breast | 1.42e-08 | 3 |
cardiac fibroblast | 1.14e-07 | 6 |
preadipocyte | 2.12e-07 | 12 |
fibroblast of choroid plexus | 2.18e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.27e-08 | 73 |
skeletal muscle tissue | 1.60e-08 | 62 |
striated muscle tissue | 1.60e-08 | 62 |
myotome | 1.60e-08 | 62 |
muscle tissue | 3.90e-08 | 64 |
musculature | 3.90e-08 | 64 |
musculature of body | 3.90e-08 | 64 |
heart | 5.63e-08 | 24 |
primitive heart tube | 5.63e-08 | 24 |
primary heart field | 5.63e-08 | 24 |
anterior lateral plate mesoderm | 5.63e-08 | 24 |
heart tube | 5.63e-08 | 24 |
heart primordium | 5.63e-08 | 24 |
cardiac mesoderm | 5.63e-08 | 24 |
cardiogenic plate | 5.63e-08 | 24 |
heart rudiment | 5.63e-08 | 24 |
somite | 5.79e-08 | 71 |
presomitic mesoderm | 5.79e-08 | 71 |
presumptive segmental plate | 5.79e-08 | 71 |
dermomyotome | 5.79e-08 | 71 |
trunk paraxial mesoderm | 5.79e-08 | 71 |
paraxial mesoderm | 8.49e-08 | 72 |
presumptive paraxial mesoderm | 8.49e-08 | 72 |
vascular plexus | 2.18e-07 | 2 |
ventricle of nervous system | 2.18e-07 | 2 |
choroid plexus | 2.18e-07 | 2 |
brain ventricle | 2.18e-07 | 2 |
ventricular system of brain | 2.18e-07 | 2 |
ventricular system of central nervous system | 2.18e-07 | 2 |
multilaminar epithelium | 3.78e-07 | 83 |
trunk mesenchyme | 6.49e-07 | 122 |
primary circulatory organ | 6.65e-07 | 27 |
epithelial vesicle | 6.81e-07 | 78 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.