FFCP PHASE1:Mm9::chr11:4166528..4166547,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=16878|HGNC=|MCL_coexpression_id=7|UniProt=|association_with_transcript=-251bp_to_ENSMUST00000154927_5end|description=CAGE_peak_1_at_Lif_5end|id=chr11:4166528..4166547,+|ontology_enrichment_celltype=CL:0000144!1.86e-09!121;CL:0000012!1.86e-09!121;CL:0000548!3.55e-08!115;CL:0000004!3.55e-08!115;CL:0000255!3.55e-08!115;CL:0002371!5.45e-08!118;CL:0000107!4.95e-07!9|ontology_enrichment_celltype_v019_2=CL:0000034,5.81e-20,97;CL:0000723,9.26e-15,91;CL:0000048,9.26e-15,91;CL:0000222,4.28e-13,7;CL:0000107,3.40e-12,9;CL:0000680,1.77e-11,6;CL:0000187,1.77e-11,6;CL:0000056,1.77e-11,6;CL:0000219,3.91e-11,54;CL:0002320,6.91e-10,46;CL:0000134,6.91e-10,46;CL:0002321,3.36e-09,70;CL:0000988,5.99e-08,32;CL:0002032,5.99e-08,32;CL:0000037,5.99e-08,32;CL:0000837,5.99e-08,32;CL:0000068,9.28e-08,3;CL:0002202,9.28e-08,3;CL:0000069,9.28e-08,3;CL:0002632,9.28e-08,3;CL:0002368,9.28e-08,3;CL:0000307,9.28e-08,3;CL:0000377,9.28e-08,3;CL:0000355,2.15e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000010!2.32e-08!11;UBERON:0001004!1.04e-07!42;UBERON:0000072!1.05e-07!27;UBERON:0000065!2.51e-07!41;UBERON:0002410!4.95e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000010,2.57e-15,11;UBERON:0002410,3.40e-12,9;UBERON:0002384,6.91e-10,46;UBERON:0002204,1.04e-08,32;UBERON:0003126,9.28e-08,3;UBERON:0001005,9.28e-08,3;UBERON:0007196,9.28e-08,3;UBERON:0001558,9.28e-08,3;UBERON:0001134,2.15e-07,9;UBERON:0002036,2.15e-07,9;UBERON:0002385,2.15e-07,9;UBERON:0000486,2.15e-07,9;UBERON:0007503,2.15e-07,9;UBERON:0001015,2.15e-07,9;UBERON:0002329,2.15e-07,9;UBERON:0003082,2.15e-07,9;UBERON:0003059,2.15e-07,9;UBERON:0007282,2.15e-07,9;UBERON:0004290,2.15e-07,9;UBERON:0009618,2.15e-07,9;UBERON:0000011,4.70e-07,3|phase1_expression=0.160148847104794,0.697950815278722,0,0,0,0.839396359559449,0.934450562382103,1.80772652818207,762.511719173427,882.657328760237,33.7299397404245,31.2706863261719,0.513602189793617,0.34968160967599,0,0,0,0,0,0,0.510259740906419,0.0992909512008853,0,0,0,1.14846392823004,0.86152399231815,0.646413698057667,0,0,0,0,0,0,0,0.498703936075477,0.408338712524738,0.418531630736908,0,0,0,0,0.971020706062307,5.79125362687656,6.79225439170748,6.42413632565885,0,0.218025156380447,1.31811709640683,0.58328969722285,0,0,0,0,0,6.94600477297057,1.43266719969378,6.70373719960675,0,0,0,2.03306719241479,0.889294796111139,3.1496490104849,5.93319817540185,12.0781619540837,4.79360176829448,2.68952813725088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01348824665875,3.55186332501892,5.2175607966302,0.860423876981386,0,0,0,0,0.140444420131752,0.170430322578058,0,0,0,0,0,0,213.89314851908,212.062207402658,184.516422430396,0.11418387971906,2.07150306917737,0.148442139064825,0,0,0,0,0.352766121407114,0,0.494389935468748,0,0,0,0,0,0,0,0,0,31.9906382430807,6.59893004092748,18.5522531526674,0,0,0,0,0,0,0,0.101839363850316,0.248813941220186,0.252722758433675,0,0.130120442962704,0,0,0,0.0680364991513279,0,0.0937017245597288,0,0,0,0,0,0,0.348252166522167,0.411564272815887,0.199034266818493,1.40442637462647,2.83082697826187,5.96743348730745,0,0,0,0.23674473558521,0,0,0,0,0.350296027101508,0,0,0.0810688095458557,0,0,0,0,0,0,0.264450566663544,0,0,0,0,0,0,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0,0,0,0,0,0.140271639780637,0.0632365371242573,0.295220295959204,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234690248288502,0.167506257441816,0.476087281772027,0.585400943573396,0,0,0.159454768657487,0.491589944147214,0.690739927463582,1.3018415272336,0,0,0,0.275936746304732,0.160550589987792,0,0.163934945376675,0.252470927204373,1.26203287766503,2.34263246577983,0.430846795465598,7.40803273652911,15.5959071857676,13.587673477864,1.21443210502468,3.21481443702443,1.58115111178609,0,0,0,0.162886959353576,0.659880491890142,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0.23467170806371,0.42366414172764,0,0,0,0.180938774784468,0.119372344003136,0.164140899745061,0,0,0,0,0,0,0.136694227721025,0.228778173206523,109.636087346037,105.943249409009,83.0581842564587,0,0.158167996790568,0,0.108005340821801,0,0.218362563746178,0,0.330613822901344,0,0.259229946583586,0.621339313086926,0,0,0,0.194451188344048,0,0,0.117357238645754,0,0,0,0,0,0.810900861160657,0.410843828659309,0.129920822977795,0.179026695667481,0.198681354781265,0.360586348559907,0.443068581523732,0.504832249740738,0.15241361331,0.302478555410522,0.194915761479505,0.0962118416403295,0.233753804363138,0.226730383615211,0.887943813496259,2.06341870201794,1.84673078000486,0.19318959403219,0.750729901804728,16.3004945597866,0.857473516316263,0,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,0,0.243106717068294,0.209613162627982,0,0,0,0.320919209591815,0,0.25347929989024,0,0.0936415074698824,0.128050304809739,0.0574354689556133,0,0,0.192909220463705,0,0.147198920134397,0.342869252385415,0.177475806159338,0.238436189947321,0,0,0,0,0,0,0,0,0,0,0.154936841185966,0,0,0,0,0.191288332068843,0,0|short_description=p1@Lif}} | ||
|EntrezGene=16878 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|UniProt= | |||
|association_with_transcript=-251bp_to_ENSMUST00000154927_5end | |||
|description=CAGE_peak_1_at_Lif_5end | |||
|id=chr11:4166528..4166547,+ | |||
|ontology_enrichment_celltype=CL:0000144!1.86e-09!121;CL:0000012!1.86e-09!121;CL:0000548!3.55e-08!115;CL:0000004!3.55e-08!115;CL:0000255!3.55e-08!115;CL:0002371!5.45e-08!118;CL:0000107!4.95e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,5.81e-20,97;CL:0000723,9.26e-15,91;CL:0000048,9.26e-15,91;CL:0000222,4.28e-13,7;CL:0000107,3.40e-12,9;CL:0000680,1.77e-11,6;CL:0000187,1.77e-11,6;CL:0000056,1.77e-11,6;CL:0000219,3.91e-11,54;CL:0002320,6.91e-10,46;CL:0000134,6.91e-10,46;CL:0002321,3.36e-09,70;CL:0000988,5.99e-08,32;CL:0002032,5.99e-08,32;CL:0000037,5.99e-08,32;CL:0000837,5.99e-08,32;CL:0000068,9.28e-08,3;CL:0002202,9.28e-08,3;CL:0000069,9.28e-08,3;CL:0002632,9.28e-08,3;CL:0002368,9.28e-08,3;CL:0000307,9.28e-08,3;CL:0000377,9.28e-08,3;CL:0000355,2.15e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000010!2.32e-08!11;UBERON:0001004!1.04e-07!42;UBERON:0000072!1.05e-07!27;UBERON:0000065!2.51e-07!41;UBERON:0002410!4.95e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,2.57e-15,11;UBERON:0002410,3.40e-12,9;UBERON:0002384,6.91e-10,46;UBERON:0002204,1.04e-08,32;UBERON:0003126,9.28e-08,3;UBERON:0001005,9.28e-08,3;UBERON:0007196,9.28e-08,3;UBERON:0001558,9.28e-08,3;UBERON:0001134,2.15e-07,9;UBERON:0002036,2.15e-07,9;UBERON:0002385,2.15e-07,9;UBERON:0000486,2.15e-07,9;UBERON:0007503,2.15e-07,9;UBERON:0001015,2.15e-07,9;UBERON:0002329,2.15e-07,9;UBERON:0003082,2.15e-07,9;UBERON:0003059,2.15e-07,9;UBERON:0007282,2.15e-07,9;UBERON:0004290,2.15e-07,9;UBERON:0009618,2.15e-07,9;UBERON:0000011,4.70e-07,3 | |||
|phase1_expression=0.160148847104794,0.697950815278722,0,0,0,0.839396359559449,0.934450562382103,1.80772652818207,762.511719173427,882.657328760237,33.7299397404245,31.2706863261719,0.513602189793617,0.34968160967599,0,0,0,0,0,0,0.510259740906419,0.0992909512008853,0,0,0,1.14846392823004,0.86152399231815,0.646413698057667,0,0,0,0,0,0,0,0.498703936075477,0.408338712524738,0.418531630736908,0,0,0,0,0.971020706062307,5.79125362687656,6.79225439170748,6.42413632565885,0,0.218025156380447,1.31811709640683,0.58328969722285,0,0,0,0,0,6.94600477297057,1.43266719969378,6.70373719960675,0,0,0,2.03306719241479,0.889294796111139,3.1496490104849,5.93319817540185,12.0781619540837,4.79360176829448,2.68952813725088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01348824665875,3.55186332501892,5.2175607966302,0.860423876981386,0,0,0,0,0.140444420131752,0.170430322578058,0,0,0,0,0,0,213.89314851908,212.062207402658,184.516422430396,0.11418387971906,2.07150306917737,0.148442139064825,0,0,0,0,0.352766121407114,0,0.494389935468748,0,0,0,0,0,0,0,0,0,31.9906382430807,6.59893004092748,18.5522531526674,0,0,0,0,0,0,0,0.101839363850316,0.248813941220186,0.252722758433675,0,0.130120442962704,0,0,0,0.0680364991513279,0,0.0937017245597288,0,0,0,0,0,0,0.348252166522167,0.411564272815887,0.199034266818493,1.40442637462647,2.83082697826187,5.96743348730745,0,0,0,0.23674473558521,0,0,0,0,0.350296027101508,0,0,0.0810688095458557,0,0,0,0,0,0,0.264450566663544,0,0,0,0,0,0,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0,0,0,0,0,0.140271639780637,0.0632365371242573,0.295220295959204,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234690248288502,0.167506257441816,0.476087281772027,0.585400943573396,0,0,0.159454768657487,0.491589944147214,0.690739927463582,1.3018415272336,0,0,0,0.275936746304732,0.160550589987792,0,0.163934945376675,0.252470927204373,1.26203287766503,2.34263246577983,0.430846795465598,7.40803273652911,15.5959071857676,13.587673477864,1.21443210502468,3.21481443702443,1.58115111178609,0,0,0,0.162886959353576,0.659880491890142,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0.23467170806371,0.42366414172764,0,0,0,0.180938774784468,0.119372344003136,0.164140899745061,0,0,0,0,0,0,0.136694227721025,0.228778173206523,109.636087346037,105.943249409009,83.0581842564587,0,0.158167996790568,0,0.108005340821801,0,0.218362563746178,0,0.330613822901344,0,0.259229946583586,0.621339313086926,0,0,0,0.194451188344048,0,0,0.117357238645754,0,0,0,0,0,0.810900861160657,0.410843828659309,0.129920822977795,0.179026695667481,0.198681354781265,0.360586348559907,0.443068581523732,0.504832249740738,0.15241361331,0.302478555410522,0.194915761479505,0.0962118416403295,0.233753804363138,0.226730383615211,0.887943813496259,2.06341870201794,1.84673078000486,0.19318959403219,0.750729901804728,16.3004945597866,0.857473516316263,0,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,0,0.243106717068294,0.209613162627982,0,0,0,0.320919209591815,0,0.25347929989024,0,0.0936415074698824,0.128050304809739,0.0574354689556133,0,0,0.192909220463705,0,0.147198920134397,0.342869252385415,0.177475806159338,0.238436189947321,0,0,0,0,0,0,0,0,0,0,0.154936841185966,0,0,0,0,0.191288332068843,0,0 | |||
|short_description=p1@Lif | |||
}} |
Revision as of 19:38, 12 September 2013
Short description: | p1@Lif |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lif_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | -251bp_to_ENSMUST00000154927_5end |
EntrezGene: | Lif |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 5.81e-20 | 97 |
somatic stem cell | 9.26e-15 | 91 |
multi fate stem cell | 9.26e-15 | 91 |
mesodermal cell | 4.28e-13 | 7 |
autonomic neuron | 3.40e-12 | 9 |
muscle precursor cell | 1.77e-11 | 6 |
muscle cell | 1.77e-11 | 6 |
myoblast | 1.77e-11 | 6 |
motile cell | 3.91e-11 | 54 |
connective tissue cell | 6.91e-10 | 46 |
mesenchymal cell | 6.91e-10 | 46 |
embryonic cell | 3.36e-09 | 70 |
hematopoietic cell | 5.99e-08 | 32 |
hematopoietic oligopotent progenitor cell | 5.99e-08 | 32 |
hematopoietic stem cell | 5.99e-08 | 32 |
hematopoietic multipotent progenitor cell | 5.99e-08 | 32 |
duct epithelial cell | 9.28e-08 | 3 |
epithelial cell of tracheobronchial tree | 9.28e-08 | 3 |
branched duct epithelial cell | 9.28e-08 | 3 |
epithelial cell of lower respiratory tract | 9.28e-08 | 3 |
respiratory epithelial cell | 9.28e-08 | 3 |
tracheal epithelial cell | 9.28e-08 | 3 |
tracheoblast | 9.28e-08 | 3 |
multi-potent skeletal muscle stem cell | 2.15e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
peripheral nervous system | 2.57e-15 | 11 |
autonomic nervous system | 3.40e-12 | 9 |
connective tissue | 6.91e-10 | 46 |
musculoskeletal system | 1.04e-08 | 32 |
trachea | 9.28e-08 | 3 |
respiratory airway | 9.28e-08 | 3 |
tracheobronchial tree | 9.28e-08 | 3 |
lower respiratory tract | 9.28e-08 | 3 |
skeletal muscle tissue | 2.15e-07 | 9 |
striated muscle tissue | 2.15e-07 | 9 |
muscle tissue | 2.15e-07 | 9 |
multilaminar epithelium | 2.15e-07 | 9 |
epithelial vesicle | 2.15e-07 | 9 |
musculature | 2.15e-07 | 9 |
somite | 2.15e-07 | 9 |
myotome | 2.15e-07 | 9 |
presomitic mesoderm | 2.15e-07 | 9 |
presumptive segmental plate | 2.15e-07 | 9 |
dermomyotome | 2.15e-07 | 9 |
trunk paraxial mesoderm | 2.15e-07 | 9 |
parasympathetic nervous system | 4.70e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.