FFCP PHASE1:Mm9::chr11:6167721..6167758,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=52513|HGNC=|MCL_coexpression_id=301|UniProt=Q5SVX3,Q9D0R4|association_with_transcript=0bp_to_ENSMUST00000155874,NM_026538,uc007hyc.1_5end|description=CAGE_peak_1_at_Ddx56_5end|id=chr11:6167721..6167758,-|ontology_enrichment_celltype=CL:0000219!2.06e-08!54;CL:0000988!1.40e-07!32;CL:0002032!1.40e-07!32;CL:0000037!1.40e-07!32;CL:0000566!1.40e-07!32;CL:0000837!1.40e-07!32;CL:0002320!2.95e-07!46;CL:0000134!2.95e-07!46|ontology_enrichment_celltype_v019_2=CL:0000219,2.06e-08,54;CL:0000988,1.40e-07,32;CL:0002032,1.40e-07,32;CL:0000037,1.40e-07,32;CL:0000837,1.40e-07,32;CL:0002320,2.95e-07,46;CL:0000134,2.95e-07,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002384!2.95e-07!46|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.95e-07,46|phase1_expression=22.1005409004616,10.4692622291808,5.45999087267443,6.35174843744343,6.01074875935617,18.4667199103079,17.5209480446644,23.75869151325,85.4587543460617,74.9006484230379,91.4303950324197,68.045651623022,34.4113467161724,25.8764391160232,27.3150004688843,22.4747546802707,17.4890469532037,26.498821890092,28.7940310572051,34.3755617956405,15.3928355173436,28.0993391898505,29.5155761726997,15.1992801653736,23.1703373877842,8.03924749761028,9.90752591165872,11.635446565038,12.5415456841207,20.4144405105544,24.3903561720835,117.480674590032,102.715819526623,110.937176710807,41.8834848639348,41.5586613396231,41.6505486775233,4.60384793810598,7.813353445238,6.28228492768558,1.17646297606203,5.46436387966757,7.2826552954673,21.9060463277504,23.0125633868298,22.9433440202102,28.1660883965294,37.0642765846759,27.2410866590745,25.2758868796568,26.7374065304442,41.6882436658418,34.2276516357782,26.1130371124084,23.5265659399725,17.4936416504444,16.3324060765091,18.0485232297105,24.4802917640113,27.5075309221457,20.2826049121977,39.3059657200193,41.7968554172235,27.8968912357234,26.6993917893083,29.8401648277362,22.4700082888804,29.5848095097597,24.6781277294177,26.8661817280064,23.7667206327062,22.2807767834967,24.2955395046775,24.7431414414207,27.6993411242703,29.4150011715207,24.2254938198655,24.515968912356,23.5017995882053,24.3989632300859,25.4335649214699,21.3574481928272,32.1060448851588,24.7615548413939,23.0725354142983,23.2756582524197,22.4947255662583,23.2999307281626,27.2614295999463,20.1776065485117,20.5803786978191,26.673140186423,39.4383373550495,24.2866436237018,25.3412802804591,28.6737207742295,15.5893306346245,13.1231348385104,13.5088722393492,13.4269038313929,17.8871143116384,10.2661181931454,2.54805239706646,7.11066703153331,24.6799786752784,28.6296647986861,26.2872711407687,14.0446172054444,16.572024553419,26.1258164754092,42.3304197309372,35.0135300058962,32.0555541185921,25.7735715344985,23.4001527200053,22.4943198480119,20.0227923864843,16.0505286181102,20.3460426948471,21.353224193058,19.654895142975,17.9403843660032,24.2309289583559,26.6430525280508,26.1808383516819,18.3929079750186,34.0274953596814,37.7938720525847,40.5354024363076,26.6627338140584,24.7050325522058,27.5183031127173,20.8589184230732,23.7815375317207,24.7267773025876,24.0117069340281,28.1076644226873,19.5318943857846,29.5685627367399,18.7293251738962,27.1951725792051,41.6122809024586,25.7488845621649,27.4282768461001,25.5817236808993,22.5480147701336,24.7372552837684,19.9201595469042,32.9819029187249,33.6608822698718,28.5040821145597,26.7418793561641,29.751055667139,25.074155989596,25.7227670509929,32.4425854914144,47.0482835499867,44.263840023731,44.0453424063169,22.5767092063697,22.045449638223,18.1862682075625,17.992599904476,21.6440654922144,16.9693824176116,20.2304531932855,23.3397859217669,16.8142093008724,21.0636607889255,18.879258369096,16.3758995282629,16.2281986042119,18.6617597997393,17.1784216013276,24.3936340334388,22.0215870491669,11.2342386214491,23.0071992997284,31.9932375802851,36.4611574820889,27.9642391068943,34.0845156613449,26.4629872175396,32.7188076913602,19.9302205848695,25.1989400727737,24.6308504624264,18.3039954277859,21.6410136702223,18.8752075817387,16.6426298403515,17.7235733196387,35.0885616763201,27.6481400515544,22.5415471346161,25.4564159806643,23.0803459729475,22.4434623649019,19.0974342115257,13.8753539100826,16.1708689676616,19.8669433914099,30.2381679628892,31.3668798746257,34.5943831399237,35.5282137568069,27.7918366302249,27.9765505312804,33.6106124351474,25.6049562331221,31.940639674682,24.7105271869273,23.0029130443767,21.5841749647732,19.3463357331028,29.8043075977592,30.3181628852032,27.0168371963486,19.5838381576601,35.2454025893102,29.6596257124487,28.1776842386812,24.1730955737157,20.938282180227,20.4717531161972,17.3668946593441,17.339865851681,13.2878813789265,20.5696651568158,16.7140581010053,16.577758259126,22.8545512558788,16.5870412333199,11.9659250440116,20.6540994667995,22.9027499432928,26.972499117949,24.7316658709549,28.8525503862949,24.4896799388242,20.5080342620567,21.4741309363151,20.4652227846159,27.720380562496,20.7202766896627,17.5507449089076,20.6453457854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| ||
|EntrezGene=52513 | |||
|HGNC= | |||
|MCL_coexpression_id=301 | |||
|UniProt=Q5SVX3,Q9D0R4 | |||
|association_with_transcript=0bp_to_ENSMUST00000155874,NM_026538,uc007hyc.1_5end | |||
|description=CAGE_peak_1_at_Ddx56_5end | |||
|id=chr11:6167721..6167758,- | |||
|ontology_enrichment_celltype=CL:0000219!2.06e-08!54;CL:0000988!1.40e-07!32;CL:0002032!1.40e-07!32;CL:0000037!1.40e-07!32;CL:0000566!1.40e-07!32;CL:0000837!1.40e-07!32;CL:0002320!2.95e-07!46;CL:0000134!2.95e-07!46 | |||
|ontology_enrichment_celltype_v019_2=CL:0000219,2.06e-08,54;CL:0000988,1.40e-07,32;CL:0002032,1.40e-07,32;CL:0000037,1.40e-07,32;CL:0000837,1.40e-07,32;CL:0002320,2.95e-07,46;CL:0000134,2.95e-07,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!2.95e-07!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.95e-07,46 | |||
|phase1_expression=22.1005409004616,10.4692622291808,5.45999087267443,6.35174843744343,6.01074875935617,18.4667199103079,17.5209480446644,23.75869151325,85.4587543460617,74.9006484230379,91.4303950324197,68.045651623022,34.4113467161724,25.8764391160232,27.3150004688843,22.4747546802707,17.4890469532037,26.498821890092,28.7940310572051,34.3755617956405,15.3928355173436,28.0993391898505,29.5155761726997,15.1992801653736,23.1703373877842,8.03924749761028,9.90752591165872,11.635446565038,12.5415456841207,20.4144405105544,24.3903561720835,117.480674590032,102.715819526623,110.937176710807,41.8834848639348,41.5586613396231,41.6505486775233,4.60384793810598,7.813353445238,6.28228492768558,1.17646297606203,5.46436387966757,7.2826552954673,21.9060463277504,23.0125633868298,22.9433440202102,28.1660883965294,37.0642765846759,27.2410866590745,25.2758868796568,26.7374065304442,41.6882436658418,34.2276516357782,26.1130371124084,23.5265659399725,17.4936416504444,16.3324060765091,18.0485232297105,24.4802917640113,27.5075309221457,20.2826049121977,39.3059657200193,41.7968554172235,27.8968912357234,26.6993917893083,29.8401648277362,22.4700082888804,29.5848095097597,24.6781277294177,26.8661817280064,23.7667206327062,22.2807767834967,24.2955395046775,24.7431414414207,27.6993411242703,29.4150011715207,24.2254938198655,24.515968912356,23.5017995882053,24.3989632300859,25.4335649214699,21.3574481928272,32.1060448851588,24.7615548413939,23.0725354142983,23.2756582524197,22.4947255662583,23.2999307281626,27.2614295999463,20.1776065485117,20.5803786978191,26.673140186423,39.4383373550495,24.2866436237018,25.3412802804591,28.6737207742295,15.5893306346245,13.1231348385104,13.5088722393492,13.4269038313929,17.8871143116384,10.2661181931454,2.54805239706646,7.11066703153331,24.6799786752784,28.6296647986861,26.2872711407687,14.0446172054444,16.572024553419,26.1258164754092,42.3304197309372,35.0135300058962,32.0555541185921,25.7735715344985,23.4001527200053,22.4943198480119,20.0227923864843,16.0505286181102,20.3460426948471,21.353224193058,19.654895142975,17.9403843660032,24.2309289583559,26.6430525280508,26.1808383516819,18.3929079750186,34.0274953596814,37.7938720525847,40.5354024363076,26.6627338140584,24.7050325522058,27.5183031127173,20.8589184230732,23.7815375317207,24.7267773025876,24.0117069340281,28.1076644226873,19.5318943857846,29.5685627367399,18.7293251738962,27.1951725792051,41.6122809024586,25.7488845621649,27.4282768461001,25.5817236808993,22.5480147701336,24.7372552837684,19.9201595469042,32.9819029187249,33.6608822698718,28.5040821145597,26.7418793561641,29.751055667139,25.074155989596,25.7227670509929,32.4425854914144,47.0482835499867,44.263840023731,44.0453424063169,22.5767092063697,22.045449638223,18.1862682075625,17.992599904476,21.6440654922144,16.9693824176116,20.2304531932855,23.3397859217669,16.8142093008724,21.0636607889255,18.879258369096,16.3758995282629,16.2281986042119,18.6617597997393,17.1784216013276,24.3936340334388,22.0215870491669,11.2342386214491,23.0071992997284,31.9932375802851,36.4611574820889,27.9642391068943,34.0845156613449,26.4629872175396,32.7188076913602,19.9302205848695,25.1989400727737,24.6308504624264,18.3039954277859,21.6410136702223,18.8752075817387,16.6426298403515,17.7235733196387,35.0885616763201,27.6481400515544,22.5415471346161,25.4564159806643,23.0803459729475,22.4434623649019,19.0974342115257,13.8753539100826,16.1708689676616,19.8669433914099,30.2381679628892,31.3668798746257,34.5943831399237,35.5282137568069,27.7918366302249,27.9765505312804,33.6106124351474,25.6049562331221,31.940639674682,24.7105271869273,23.0029130443767,21.5841749647732,19.3463357331028,29.8043075977592,30.3181628852032,27.0168371963486,19.5838381576601,35.2454025893102,29.6596257124487,28.1776842386812,24.1730955737157,20.938282180227,20.4717531161972,17.3668946593441,17.339865851681,13.2878813789265,20.5696651568158,16.7140581010053,16.577758259126,22.8545512558788,16.5870412333199,11.9659250440116,20.6540994667995,22.9027499432928,26.972499117949,24.7316658709549,28.8525503862949,24.4896799388242,20.5080342620567,21.4741309363151,20.4652227846159,27.720380562496,20.7202766896627,17.5507449089076,20.6453457854196,19.2888866221466,20.1596766752727,24.7417413644791,27.5363765304041,31.6956774527714,24.4330439030364,21.1161757404845,21.2392221343941,41.7582694186568,39.6043859623824,28.8565772026524,41.0469631104274,26.7468578711217,24.0338312646446,22.1755574981278,22.4593348382374,25.9150141507369,14.7586052004998,22.6898195146011,29.2778060948258,24.8484309763208,34.0213338348644,32.3648922897704,22.8768901398533,24.9716344642899,29.2897256671775,36.5357938937519,21.5897971418614,23.0896957241564,26.0223509704855,12.8611277294354,16.6308359496783,19.9032652262914,23.9938411446304,25.9342621597197,19.8206968908299,23.1781627513137,23.9219233116994,28.0686140429983,28.1495681601962,16.7647926734175,20.5041341581538,21.2763701082066,29.406268388937,31.7689796774704,28.6073945775157,16.2294005062569,33.8479513131815,29.0746837991394,28.8374259994209,27.8087433699243,22.2729815021101,20.2296519577231,20.167443196982,19.1081837648342,17.1091764745167,19.2615187056947,56.9329868071032,29.1557264785759,36.2354094101044,27.0287151798226,26.4777638129349,23.4849014432182,25.1144490701913,21.8743366537836,23.9079305290621,31.4059357073808,33.4114807259124,17.3806116345498,53.3167316213132,35.7434130933599,31.9605224525376,26.1378975674523,24.4378066380956,26.3228034448732,25.5502882012019,23.3232499380221,23.47169644974,25.5090248396207,16.5678397257579,22.5135709438371,23.3753804363138,24.0334206632124,32.6319351459875,52.1237506901054,39.7886540782866,25.3078368182169,20.4573898241788,23.4434079062099,24.0092584568554,24.5770330977328,16.942555278512,18.4130094602871,23.4887160510153,14.4356673168698,28.773465830367,33.2373314851468,27.675922509504,24.3173449741079,25.8291173120997,26.4057758993428,26.5695609815492,33.1190644922856,38.9272621119426,21.6364978190782,20.9613162627982,26.105778199902,26.2251138805906,23.0759264107562,22.4643446714271,21.9846574234504,21.2922611907801,21.3147765766266,18.0728109416873,19.8477972455095,18.3793500657962,20.4806287251722,23.1768651889711,22.5703787942535,21.8405527425753,20.6078488188156,19.8864166383541,17.0376773912964,18.8364590058384,23.2554266611726,21.5510481151107,20.0536620703273,20.3050049888778,18.6779495120868,21.3212458738003,23.0068331379673,22.4220184254689,21.4739771578728,20.0523211153148,20.1417893541756,23.5346065396992,29.4776481966776,25.9664085374403,23.6358159453128,23.1458881803301,25.1474217796248,22.02744438394 | |||
|short_description=p1@Ddx56 | |||
}} | |||
Revision as of 20:17, 12 September 2013
| Short description: | p1@Ddx56 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Ddx56_5end |
| Coexpression cluster: | MCL_coexpression_mm9:301 |
| Association with transcript: | 0bp_to_ENSMUST00000155874, NM_026538, uc007hyc.1_5end |
| EntrezGene: | Ddx56 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| motile cell | 2.06e-08 | 54 |
| hematopoietic cell | 1.40e-07 | 32 |
| hematopoietic oligopotent progenitor cell | 1.40e-07 | 32 |
| hematopoietic stem cell | 1.40e-07 | 32 |
| hematopoietic multipotent progenitor cell | 1.40e-07 | 32 |
| connective tissue cell | 2.95e-07 | 46 |
| mesenchymal cell | 2.95e-07 | 46 |
| Ontology term | p-value | n |
|---|---|---|
| connective tissue | 2.95e-07 | 46 |
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Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
