FFCP PHASE1:Hg19::chr5:68788435..68788460,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=100506658|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8104|TSSclassifier=S|UniProt=A8K3T2,Q16625|association_with_transcript=-129bp_to_NM_001205254_5end|coexpression_cluster_id=C4514|description=CAGE_peak_4_at_OCLN_5end|id=chr5:68788435..68788460,+|ontology_enrichment_celltype=CL:0000223!1.06e-15!59;CL:0000066!1.99e-15!254;CL:0002076!3.57e-13!43;CL:0002251!2.59e-08!21|ontology_enrichment_celltype_v019=CL:0002076;5.28e-08;42|ontology_enrichment_celltype_v019_2=CL:0000066,1.64e-11,253;CL:0002076,5.88e-10,42;CL:0000223,1.33e-09,58|ontology_enrichment_development_v019=UBERON:0006595;8.21e-08;86|ontology_enrichment_disease=DOID:305!9.25e-22!106;DOID:0050687!6.69e-14!143;DOID:299!3.47e-12!25;DOID:1749!5.18e-11!14|ontology_enrichment_disease_v019=DOID:299;5.33e-14;25!DOID:1749;1.42e-09;14!DOID:5093;7.76e-08;4!DOID:1612;7.76e-08;4!DOID:305;8.58e-07;106|ontology_enrichment_disease_v019_2=DOID:305,8.30e-17,106;DOID:299,5.48e-14,25;DOID:0050687,3.51e-11,143;DOID:1749,1.36e-09,14;DOID:5093,9.69e-08,4;DOID:1612,9.69e-08,4|ontology_enrichment_uberon=UBERON:0004119!5.97e-19!169;UBERON:0000925!5.97e-19!169;UBERON:0006595!5.97e-19!169;UBERON:0001007!4.42e-18!155;UBERON:0001555!4.42e-18!155;UBERON:0007026!4.42e-18!155;UBERON:0004921!1.39e-17!129;UBERON:0004185!1.39e-17!129;UBERON:0000077!1.95e-14!130;UBERON:0000466!4.13e-13!126;UBERON:0001041!1.15e-11!98;UBERON:0007023!2.21e-11!115;UBERON:0000062!2.86e-11!511;UBERON:0000464!1.30e-10!104;UBERON:0005177!1.05e-09!107;UBERON:0005911!1.09e-09!82;UBERON:0001004!1.25e-08!72;UBERON:0005409!1.47e-07!35;UBERON:0005156!2.16e-07!59;UBERON:0000990!2.16e-07!59;UBERON:0005153!2.24e-07!37;UBERON:0009569!2.72e-07!113;UBERON:0000468!4.30e-07!659;UBERON:0005181!4.43e-07!35;UBERON:0000481!6.36e-07!347;UBERON:0003133!7.15e-07!48|ontology_enrichment_uberon_v019=UBERON:0004921;8.37e-15;33!UBERON:0005409;1.57e-13;22!UBERON:0000160;4.18e-11;17!UBERON:0002294;8.81e-10;7!UBERON:0001173;8.81e-10;7!UBERON:0002108;5.66e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0004921,2.10e-18,118;UBERON:0001007,3.05e-18,145;UBERON:0001555,3.05e-18,145;UBERON:0007026,3.05e-18,145;UBERON:0004119,3.34e-17,160;UBERON:0000925,3.34e-17,160;UBERON:0006595,3.34e-17,160;UBERON:0005409,3.26e-13,25;UBERON:0000160,4.07e-11,17;UBERON:0001041,7.48e-11,87;UBERON:0005911,9.93e-09,82;UBERON:0005177,7.62e-08,101;UBERON:0002294,2.29e-07,9;UBERON:0001173,2.29e-07,9;UBERON:0004912,2.29e-07,9;UBERON:0009569,3.68e-07,112;UBERON:0002108,5.14e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.589405839739707,1.45718115317017,2.59549109949101,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,1.09098448236334,0,1.09776335516636,0.397589304964456,0.580969714347592,0.518305275076852,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.33775174109154,1.96565443335525,0.590789906681404,0,13.4057398011994,0,0.439001141634502,2.24803506515239,0.402115889646523,0.462942225792648,0,0,0,0,0,0,0,0,1.58040879591855,7.72637545885385,0,0,0,0,0.335964256397719,0.708875486211932,0.806026704325635,2.03443756959773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.9982099128376,0,19.0607647097305,0,0,0,0.902399225814824,2.92658280996776,0,0,1.26661954671451,0,0,0,0,0,0,2.03901018436031,1.66215201785745,0,0,0,0,0,0,2.36994326789761,0,0.247528499761764,0,0.650060246036521,0,0,0,0,0,0,0,0,0,3.47098322258054,0.192190067365106,0.510450849978337,5.56367794705525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25088746543166,0.670302275535787,0,1.97701981631236,0,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0.201799707191048,0.425846237690326,0,0.307240764308458,0.223676107892416,0.166849141711909,0,0,0,0,0,0,3.55567026775618,0.146508179271894,0.121360521749513,0,0,21.4870036263921,0.890894042497916,15.9723565091601,0,0.140669416410513,0,0,0.211125408127993,0,1.10513566212459,0.755798243562828,0,0,0,5.57183777113426,5.72867758961949,0,0.789147245095469,0,0,0,0.278304294485554,0,3.1251331330228,2.0115799999125,0.724999575434793,0.341380344856499,2.03402920234213,0.945550727071745,0,0,0,0,0.241192877250816,0,0.110579259931225,0,0.219385397153973,0,20.4952904089547,1.6159554285797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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=100506658 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8104 | |||
|TSSclassifier=S | |||
|UniProt=A8K3T2,Q16625 | |||
|association_with_transcript=-129bp_to_NM_001205254_5end | |||
|coexpression_cluster_id=C4514 | |||
|description=CAGE_peak_4_at_OCLN_5end | |||
|id=chr5:68788435..68788460,+ | |||
|ontology_enrichment_celltype=CL:0000223!1.06e-15!59;CL:0000066!1.99e-15!254;CL:0002076!3.57e-13!43;CL:0002251!2.59e-08!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.28e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.64e-11,253;CL:0002076,5.88e-10,42;CL:0000223,1.33e-09,58 | |||
|ontology_enrichment_development_v019=UBERON:0006595;8.21e-08;86 | |||
|ontology_enrichment_disease=DOID:305!9.25e-22!106;DOID:0050687!6.69e-14!143;DOID:299!3.47e-12!25;DOID:1749!5.18e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:299;5.33e-14;25!DOID:1749;1.42e-09;14!DOID:5093;7.76e-08;4!DOID:1612;7.76e-08;4!DOID:305;8.58e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.30e-17,106;DOID:299,5.48e-14,25;DOID:0050687,3.51e-11,143;DOID:1749,1.36e-09,14;DOID:5093,9.69e-08,4;DOID:1612,9.69e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.97e-19!169;UBERON:0000925!5.97e-19!169;UBERON:0006595!5.97e-19!169;UBERON:0001007!4.42e-18!155;UBERON:0001555!4.42e-18!155;UBERON:0007026!4.42e-18!155;UBERON:0004921!1.39e-17!129;UBERON:0004185!1.39e-17!129;UBERON:0000077!1.95e-14!130;UBERON:0000466!4.13e-13!126;UBERON:0001041!1.15e-11!98;UBERON:0007023!2.21e-11!115;UBERON:0000062!2.86e-11!511;UBERON:0000464!1.30e-10!104;UBERON:0005177!1.05e-09!107;UBERON:0005911!1.09e-09!82;UBERON:0001004!1.25e-08!72;UBERON:0005409!1.47e-07!35;UBERON:0005156!2.16e-07!59;UBERON:0000990!2.16e-07!59;UBERON:0005153!2.24e-07!37;UBERON:0009569!2.72e-07!113;UBERON:0000468!4.30e-07!659;UBERON:0005181!4.43e-07!35;UBERON:0000481!6.36e-07!347;UBERON:0003133!7.15e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;8.37e-15;33!UBERON:0005409;1.57e-13;22!UBERON:0000160;4.18e-11;17!UBERON:0002294;8.81e-10;7!UBERON:0001173;8.81e-10;7!UBERON:0002108;5.66e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,2.10e-18,118;UBERON:0001007,3.05e-18,145;UBERON:0001555,3.05e-18,145;UBERON:0007026,3.05e-18,145;UBERON:0004119,3.34e-17,160;UBERON:0000925,3.34e-17,160;UBERON:0006595,3.34e-17,160;UBERON:0005409,3.26e-13,25;UBERON:0000160,4.07e-11,17;UBERON:0001041,7.48e-11,87;UBERON:0005911,9.93e-09,82;UBERON:0005177,7.62e-08,101;UBERON:0002294,2.29e-07,9;UBERON:0001173,2.29e-07,9;UBERON:0004912,2.29e-07,9;UBERON:0009569,3.68e-07,112;UBERON:0002108,5.14e-07,4 | |||
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| |||
|short_description=p4@OCLN | |||
}} |
Revision as of 16:14, 13 September 2013
Short description: | p4@OCLN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_OCLN_5end |
Coexpression cluster: | C4514_nasal_immature_Prostate_cervical_amniotic_Intestinal_colon |
Association with transcript: | -129bp_to_NM_001205254_5end |
EntrezGene: | OCLN |
HGNC: | 8104 |
UniProt: | A8K3T2Q16625 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.64e-11 | 253 |
endo-epithelial cell | 5.88e-10 | 42 |
endodermal cell | 1.33e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 2.10e-18 | 118 |
digestive system | 3.05e-18 | 145 |
digestive tract | 3.05e-18 | 145 |
primitive gut | 3.05e-18 | 145 |
endoderm-derived structure | 3.34e-17 | 160 |
endoderm | 3.34e-17 | 160 |
presumptive endoderm | 3.34e-17 | 160 |
gastrointestinal system | 3.26e-13 | 25 |
intestine | 4.07e-11 | 17 |
foregut | 7.48e-11 | 87 |
endo-epithelium | 9.93e-09 | 82 |
trunk region element | 7.62e-08 | 101 |
biliary system | 2.29e-07 | 9 |
biliary tree | 2.29e-07 | 9 |
biliary bud | 2.29e-07 | 9 |
subdivision of trunk | 3.68e-07 | 112 |
small intestine | 5.14e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.30e-17 | 106 |
adenocarcinoma | 5.48e-14 | 25 |
cell type cancer | 3.51e-11 | 143 |
squamous cell carcinoma | 1.36e-09 | 14 |
thoracic cancer | 9.69e-08 | 4 |
breast cancer | 9.69e-08 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.