FFCP PHASE1:Hg19::chr6:29600276..29600293,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2550|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4070|TSSclassifier=S|UniProt=F8WAS6|association_with_transcript=0bp_to_ENST00000485508_5end|description=CAGE_peak_6_at_GABBR1_5end|id=chr6:29600276..29600293,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000540;1.00e-11;6!CL:0000404;1.00e-11;6|ontology_enrichment_celltype_v019_2=CL:0000047,1.23e-12,8;CL:0000540,6.52e-12,6;CL:0000031,6.52e-12,6;CL:0000404,6.52e-12,6|ontology_enrichment_development_v019=CL:0000031;1.00e-11;6!UBERON:0006215;3.53e-09;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1036;6.25e-09;8|ontology_enrichment_disease_v019_2=DOID:1036,8.79e-09,8;DOID:3307,8.31e-07,2|ontology_enrichment_uberon=UBERON:0000924!6.03e-15!173;UBERON:0006601!6.03e-15!173;UBERON:0004121!9.59e-14!169;UBERON:0001017!2.74e-13!82;UBERON:0000073!7.54e-13!94;UBERON:0001016!7.54e-13!94;UBERON:0005743!7.90e-13!86;UBERON:0002346!9.93e-10!90;UBERON:0000955!2.46e-09!69;UBERON:0006238!2.46e-09!69;UBERON:0001049!3.46e-09!57;UBERON:0005068!3.46e-09!57;UBERON:0006241!3.46e-09!57;UBERON:0007135!3.46e-09!57;UBERON:0000033!3.85e-09!123;UBERON:0002616!7.37e-09!59;UBERON:0003075!1.42e-08!86;UBERON:0007284!1.42e-08!86;UBERON:0000153!6.76e-08!129;UBERON:0007811!6.76e-08!129;UBERON:0003056!1.83e-07!61;UBERON:0003080!7.15e-07!42|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.24e-07,81|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0.655324116390517,0.263766978228454,0.247532705920093,0.331397375727916,0,0.602694528023977,0,0.487932798790507,0.369363174230364,0,0,0.286235987131057,0.410623275218653,0.502170558379211,0,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0.645484683583826,0,0.188242339542605,0,0,0,0,0.639337125799041,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0.425208599930087,0.209658645508376,0.673971786878971,0,0,1.42506371870624,1.19350006319454,0.182664153764634,0,0,0,0,0.800791974072025,0,1.32208974556972,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0,0,0.501559486172034,0,0.473447805734733,0,0.779873198196215,0,0,0,0.896639238079726,1.1705341280389,0,0,0,0.14828656316206,0,0,0.679856056185397,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0.486634870302636,0.472674085820339,0,0.702678285545008,0.196468613246569,0,0.370784442784429,0,0,0,0,0,0,0,0.860234595106124,0,1.13061588384802,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0.675668882899933,0,0,0.183201743930407,0,0,0,0.496971951695318,0.12663051166458,1.05927344650575,1.43418310374407,0,0.560677600142307,0,0.24666754841716,0.933633106199299,0.404132016209064,0.490385709340376,0.756787138224657,0,0.468642863667593,0,0,0.747243402759005,0.23486899728753,0.485618833104395,0.280901613404497,0.816616685019573,1.35117749042945,1.03325781175765,0,0.494533858557114,0,0,0.168336113954066,1.25118519871964,0.831192346452549,0,0,0,0,1.4351170855109,0.85422955527427,0.211931901159562,1.80054657650641,0.515262646192195,2.06112432036503,0.37223371266318,1.35021065793013,0.194874010322397,2.77677151668526,0.184099797284599,0.323292113637624,1.77504796258307,0.403008392910561,0.339121184620975,0,0.545492241181669,0.286804595389004,1.09776335516636,0.530119073285941,0.929551542956147,0.518305275076852,0.252320850875628,0.72995471815166,1.56449532329816,0.643240938192885,1.38134921352481,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,1.77236972004421,0,0,0,0.439001141634502,0,0.402115889646523,0,0.651616610620649,2.07986957055916,0,0.695582429850461,0,0,0,0,0,0,0.492434012174795,0,0.148631162288728,0.93733833986777,0,0.567100388969546,0.358234090811393,0,0.383382679165211,0.985326475791887,0.176096868026452,0.829312462163088,0.576479813667846,0.12624243342638,0.253991577168676,0.381988425558278,0,0,0.514137463516618,0.901029173531752,0,0.224262168690721,0.43596006883328,0.4400297149257,0.258543431515556,0,0.845302752556,0.26593811658487,0,0.771622122786426,0,0.532844358032199,0,0.542621605391443,0.823240336780769,0.325736184293735,0,1.58390374586686,0,0,0,0,0,0,0.239624855491583,2.29723871668228,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0.197030760201927,0,0.128343036279748,0.76228387266739,2.60279707715243,1.54657762555539,0.335032530668698,1.27587750330633,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,0.207970861530807,0.535286966391485,0.157702415033935,0.117141414992713,0,0,0,0,0,0.60818530127658,0.979005787313703,0.686286847621712,0,0.215714200818617,0.213455115606889,0,1.66435439510497,0.907170879989041,0,0.153461973288062,0,0,0,0,0,0.308419387605311,0.177561725313127,0.164254312027618,0,0.232420756919918,0,0.40101294060657,0.184161977871793,0,0.364182336013434,0.131124414959424,0,0.15403067420883,0.784349769176855,0,0.422206515571503,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0.650756789328606,0,0.0915694648183434,0.082509499920588,0,0.65006024603652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269475606319761,2.34640942403454,1.4668973301944,2.44137706989443,0,0,0|short_description=p6@GABBR1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=2550 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4070 | |||
|TSSclassifier=S | |||
|UniProt=F8WAS6 | |||
|association_with_transcript=0bp_to_ENST00000485508_5end | |||
|description=CAGE_peak_6_at_GABBR1_5end | |||
|id=chr6:29600276..29600293,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000540;1.00e-11;6!CL:0000404;1.00e-11;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.23e-12,8;CL:0000540,6.52e-12,6;CL:0000031,6.52e-12,6;CL:0000404,6.52e-12,6 | |||
|ontology_enrichment_development_v019=CL:0000031;1.00e-11;6!UBERON:0006215;3.53e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1036;6.25e-09;8 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,8.79e-09,8;DOID:3307,8.31e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000924!6.03e-15!173;UBERON:0006601!6.03e-15!173;UBERON:0004121!9.59e-14!169;UBERON:0001017!2.74e-13!82;UBERON:0000073!7.54e-13!94;UBERON:0001016!7.54e-13!94;UBERON:0005743!7.90e-13!86;UBERON:0002346!9.93e-10!90;UBERON:0000955!2.46e-09!69;UBERON:0006238!2.46e-09!69;UBERON:0001049!3.46e-09!57;UBERON:0005068!3.46e-09!57;UBERON:0006241!3.46e-09!57;UBERON:0007135!3.46e-09!57;UBERON:0000033!3.85e-09!123;UBERON:0002616!7.37e-09!59;UBERON:0003075!1.42e-08!86;UBERON:0007284!1.42e-08!86;UBERON:0000153!6.76e-08!129;UBERON:0007811!6.76e-08!129;UBERON:0003056!1.83e-07!61;UBERON:0003080!7.15e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.24e-07,81 | |||
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| |||
|short_description=p6@GABBR1 | |||
}} |
Revision as of 19:56, 13 September 2013
Short description: | p6@GABBR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_GABBR1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000485508_5end |
EntrezGene: | GABBR1 |
HGNC: | 4070 |
UniProt: | F8WAS6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.23e-12 | 8 |
neuron | 6.52e-12 | 6 |
neuroblast | 6.52e-12 | 6 |
electrically signaling cell | 6.52e-12 | 6 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.24e-07 | 81 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 8.79e-09 | 8 |
teratoma | 8.31e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.