FFCP PHASE1:Mm9::chr4:19497220..19497264,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=70568|HGNC=|MCL_coexpression_id=3|UniProt=Q8BT60,A2AGJ0,A2AGJ1|association_with_transcript=0bp_to_ENSMUST00000029885,ENSMUST00000108254,NM_027769,uc008sby.1,uc008sbz.1_5end|description=CAGE_peak_1_at_Cpne3_5end|id=chr4:19497220..19497264,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005256!7.22e-08!47;UBERON:0000926!3.68e-07!193;UBERON:0004120!3.68e-07!193;UBERON:0006603!3.68e-07!193;UBERON:0009569!5.13e-07!66;UBERON:0002100!7.17e-07!98|ontology_enrichment_uberon_v019_2=UBERON:0002100,4.60e-09,90;UBERON:0003104,9.64e-09,61;UBERON:0009142,9.64e-09,61;UBERON:0005256,1.18e-07,45;UBERON:0009569,5.13e-07,66|phase1_expression=25.4636666896622,13.9590163055744,13.6499771816861,18.4503168897166,21.5385163876929,17.4594442788365,18.221785966451,18.4646352521454,8.024957162645,13.5757425266756,7.19115466547121,10.8490136233658,16.606470803327,14.9488888136486,4.33042690360362,6.2767332890846,4.89693314689703,20.0318475002481,19.8815928728321,16.1268067683251,21.7710822786739,24.5248649466187,23.2467812333652,31.6784997130945,24.0879745120529,12.0588712464154,23.26114779259,22.4090081993325,37.4346136329057,44.3573028377478,20.6209374909433,1.90509202037889,0,0,30.3294200738838,26.5975432573588,20.4169356262369,266.60464877941,176.581787862379,321.443578799912,249.41015092515,242.481147160248,250.037831811044,38.3985294825511,39.3342493131716,31.9371348761326,6.25913075478431,13.9536100083486,18.6733255324301,14.9711022287198,13.2987100544094,8.62515386189829,15.4359997573117,7.97898356212479,11.4271891708438,30.8711323243136,36.6762803121609,28.3619650752593,5.46254444320914,3.1739458756322,3.80298842103708,10.5041804941431,13.3394219416671,9.89889689009539,7.9109309005358,4.2628806896766,4.79360176829448,4.61061966385865,16.9014068062819,11.2054928815303,9.46462326081219,4.85606673486466,6.84692476950002,10.2892271340561,7.76348315247715,5.51531271966013,8.8092704799511,8.68273898979276,11.5204899942183,5.67111037239834,4.29991924931325,8.85552729946492,8.09630697104005,9.00420176050688,9.62628960993904,6.77645746589436,11.6744778255264,8.01517617048792,22.5664056132888,28.9439075208989,38.5519769973231,29.2544118173671,18.3592260101093,16.1910957491345,46.7839020562322,35.3941240806895,31.4595501095124,32.0409006446749,19.743736349818,12.0135455333516,27.1827800168993,14.115912515575,5.09610479413291,0,21.8655951421326,23.055747758234,20.2209778005913,34.0267961562799,61.6272163080269,38.0011876005951,15.7871647357184,17.354532263792,20.5247792557892,23.0605640045513,32.3368944623188,32.2963139717266,22.2475470960936,72.010479746116,40.6920853896942,20.3826230933736,16.3422723660691,15.5160081003271,59.6453635897991,14.3462590535658,13.6140359428746,35.7639877292028,25.0413610217373,7.19883277192089,20.5853767858365,13.7807388252437,8.23501085073528,6.03140890141749,10.9509321721134,13.5529192385075,9.14267396062064,10.707923362472,26.1727165095313,36.7000563299774,40.9410868662553,38.9317433389977,22.5108366325477,21.1509936078795,25.3887603025542,22.9071323110287,23.5406287063594,29.9786105466548,23.2380276908127,31.8205146008989,24.574751194344,23.070941780474,25.8648152521005,21.4811817779023,29.751055667139,26.8154168222068,33.9540525073107,23.8841120182192,4.91549231119264,10.2939162845886,20.7439354558783,23.4052122965117,22.2799756982041,23.4080679899319,22.0172604094246,24.3987647366781,29.6192856743766,23.950996309292,22.8032391189676,29.1913355917924,19.2535024398772,29.7143109983162,30.6440100083335,25.7311977868585,25.2482632584708,33.1489854338118,15.9820360908737,15.7444056940305,33.7027158643474,30.4118151663076,19.4092307987063,22.2947204986021,27.0621668776396,37.9165026291884,29.3539017875229,30.4361001780095,40.3349702312835,26.3518327558417,25.6361912976275,30.8382531663784,25.930223586843,35.0539569375146,45.6051285235605,43.6119388427064,18.587454293402,21.478720370629,20.2873924211545,22.4016460629846,30.4505404853172,27.072426477663,41.3566952792643,43.9878240979214,46.1576259853642,42.9422130447866,45.6537045714209,11.5123122944105,13.562570662811,11.9176919563972,11.5630269191447,18.3294641411837,23.1709525121092,23.8787794084173,28.8600703659563,25.8087728396797,40.2550978276593,36.8419538191818,44.9334249284967,39.1497260818023,42.6965844182151,51.1390132645169,50.4376209154831,19.138632588819,22.3262017725575,21.3878808076737,24.8771663185812,32.4962139437123,44.9902481274566,34.3435220229726,44.2954754938397,36.7631384816966,41.2987850822892,47.6842245822798,49.9059597592438,50.7718195621106,31.6661696272472,44.6002660731342,34.4234991113325,39.4589547215767,13.8073507389501,12.4244387787735,30.0000950039316,22.9748543755979,19.2460013843917,27.3307121007647,25.8508077279359,22.2240982095873,23.3938607786514,20.0984336860071,28.7415598189175,21.6269334854371,24.903130010631,15.1021018718249,36.6205419837333,20.2994788180671,26.3876874152793,44.04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| ||
|EntrezGene=70568 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|UniProt=Q8BT60,A2AGJ0,A2AGJ1 | |||
|association_with_transcript=0bp_to_ENSMUST00000029885,ENSMUST00000108254,NM_027769,uc008sby.1,uc008sbz.1_5end | |||
|description=CAGE_peak_1_at_Cpne3_5end | |||
|id=chr4:19497220..19497264,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!7.22e-08!47;UBERON:0000926!3.68e-07!193;UBERON:0004120!3.68e-07!193;UBERON:0006603!3.68e-07!193;UBERON:0009569!5.13e-07!66;UBERON:0002100!7.17e-07!98 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,4.60e-09,90;UBERON:0003104,9.64e-09,61;UBERON:0009142,9.64e-09,61;UBERON:0005256,1.18e-07,45;UBERON:0009569,5.13e-07,66 | |||
|phase1_expression=25.4636666896622,13.9590163055744,13.6499771816861,18.4503168897166,21.5385163876929,17.4594442788365,18.221785966451,18.4646352521454,8.024957162645,13.5757425266756,7.19115466547121,10.8490136233658,16.606470803327,14.9488888136486,4.33042690360362,6.2767332890846,4.89693314689703,20.0318475002481,19.8815928728321,16.1268067683251,21.7710822786739,24.5248649466187,23.2467812333652,31.6784997130945,24.0879745120529,12.0588712464154,23.26114779259,22.4090081993325,37.4346136329057,44.3573028377478,20.6209374909433,1.90509202037889,0,0,30.3294200738838,26.5975432573588,20.4169356262369,266.60464877941,176.581787862379,321.443578799912,249.41015092515,242.481147160248,250.037831811044,38.3985294825511,39.3342493131716,31.9371348761326,6.25913075478431,13.9536100083486,18.6733255324301,14.9711022287198,13.2987100544094,8.62515386189829,15.4359997573117,7.97898356212479,11.4271891708438,30.8711323243136,36.6762803121609,28.3619650752593,5.46254444320914,3.1739458756322,3.80298842103708,10.5041804941431,13.3394219416671,9.89889689009539,7.9109309005358,4.2628806896766,4.79360176829448,4.61061966385865,16.9014068062819,11.2054928815303,9.46462326081219,4.85606673486466,6.84692476950002,10.2892271340561,7.76348315247715,5.51531271966013,8.8092704799511,8.68273898979276,11.5204899942183,5.67111037239834,4.29991924931325,8.85552729946492,8.09630697104005,9.00420176050688,9.62628960993904,6.77645746589436,11.6744778255264,8.01517617048792,22.5664056132888,28.9439075208989,38.5519769973231,29.2544118173671,18.3592260101093,16.1910957491345,46.7839020562322,35.3941240806895,31.4595501095124,32.0409006446749,19.743736349818,12.0135455333516,27.1827800168993,14.115912515575,5.09610479413291,0,21.8655951421326,23.055747758234,20.2209778005913,34.0267961562799,61.6272163080269,38.0011876005951,15.7871647357184,17.354532263792,20.5247792557892,23.0605640045513,32.3368944623188,32.2963139717266,22.2475470960936,72.010479746116,40.6920853896942,20.3826230933736,16.3422723660691,15.5160081003271,59.6453635897991,14.3462590535658,13.6140359428746,35.7639877292028,25.0413610217373,7.19883277192089,20.5853767858365,13.7807388252437,8.23501085073528,6.03140890141749,10.9509321721134,13.5529192385075,9.14267396062064,10.707923362472,26.1727165095313,36.7000563299774,40.9410868662553,38.9317433389977,22.5108366325477,21.1509936078795,25.3887603025542,22.9071323110287,23.5406287063594,29.9786105466548,23.2380276908127,31.8205146008989,24.574751194344,23.070941780474,25.8648152521005,21.4811817779023,29.751055667139,26.8154168222068,33.9540525073107,23.8841120182192,4.91549231119264,10.2939162845886,20.7439354558783,23.4052122965117,22.2799756982041,23.4080679899319,22.0172604094246,24.3987647366781,29.6192856743766,23.950996309292,22.8032391189676,29.1913355917924,19.2535024398772,29.7143109983162,30.6440100083335,25.7311977868585,25.2482632584708,33.1489854338118,15.9820360908737,15.7444056940305,33.7027158643474,30.4118151663076,19.4092307987063,22.2947204986021,27.0621668776396,37.9165026291884,29.3539017875229,30.4361001780095,40.3349702312835,26.3518327558417,25.6361912976275,30.8382531663784,25.930223586843,35.0539569375146,45.6051285235605,43.6119388427064,18.587454293402,21.478720370629,20.2873924211545,22.4016460629846,30.4505404853172,27.072426477663,41.3566952792643,43.9878240979214,46.1576259853642,42.9422130447866,45.6537045714209,11.5123122944105,13.562570662811,11.9176919563972,11.5630269191447,18.3294641411837,23.1709525121092,23.8787794084173,28.8600703659563,25.8087728396797,40.2550978276593,36.8419538191818,44.9334249284967,39.1497260818023,42.6965844182151,51.1390132645169,50.4376209154831,19.138632588819,22.3262017725575,21.3878808076737,24.8771663185812,32.4962139437123,44.9902481274566,34.3435220229726,44.2954754938397,36.7631384816966,41.2987850822892,47.6842245822798,49.9059597592438,50.7718195621106,31.6661696272472,44.6002660731342,34.4234991113325,39.4589547215767,13.8073507389501,12.4244387787735,30.0000950039316,22.9748543755979,19.2460013843917,27.3307121007647,25.8508077279359,22.2240982095873,23.3938607786514,20.0984336860071,28.7415598189175,21.6269334854371,24.903130010631,15.1021018718249,36.6205419837333,20.2994788180671,26.3876874152793,44.047022833667,25.2215762845929,15.5379607139188,18.1394134178851,16.9744571780308,10.9261700365886,20.9055900601871,15.247269296925,24.7202936044704,23.5288269733916,22.4386098134429,15.8127912862498,20.6271086496374,34.7248397868864,17.1058039329745,13.5826617971892,19.0759961178117,24.2956120089915,20.8691516594423,22.2141177812863,8.52501857520878,20.8857820176702,31.774810629573,34.622958494629,28.0306630000516,39.5587845404969,40.2890338520081,32.4692775688531,32.0074754502869,38.4754704351403,17.4299783889879,16.9162171989874,27.862227175035,26.1124283591293,17.706634958441,11.2089266731241,10.2950177942935,22.267174329195,25.4711643229058,22.6647957039255,35.3228128665592,21.3526795667266,29.0746837991394,34.3456983813328,35.75409861847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| |||
|short_description=p1@Cpne3 | |||
}} | |||
Revision as of 04:45, 14 September 2013
| Short description: | p1@Cpne3 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Cpne3_5end |
| Coexpression cluster: | MCL_coexpression_mm9:3 |
| Association with transcript: | 0bp_to_ENSMUST00000029885, ENSMUST00000108254, NM_027769, uc008sby.1, uc008sbz.1_5end |
| EntrezGene: | Cpne3 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| trunk | 4.60e-09 | 90 |
| mesenchyme | 9.64e-09 | 61 |
| entire embryonic mesenchyme | 9.64e-09 | 61 |
| trunk mesenchyme | 1.18e-07 | 45 |
| subdivision of trunk | 5.13e-07 | 66 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
