FFCP PHASE1:Mm9::chr7:28876815..28876836,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=499|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:28876815..28876836,+|id=chr7:28876815..28876836,+|ontology_enrichment_celltype=CL:0002563!1.26e-16!9;CL:0002251!1.26e-16!9;CL:0000239!2.48e-12!6;CL:0000677!2.48e-12!6;CL:0000212!2.48e-12!6;CL:0000584!2.48e-12!6;CL:0000075!1.90e-10!7;CL:0000066!2.76e-09!25;CL:0002076!3.04e-09!15;CL:0000473!2.33e-07!3;CL:0000627!2.33e-07!3;CL:0000682!2.33e-07!3|ontology_enrichment_celltype_v019_2=CL:0000682,5.12e-13,3;CL:0000239,6.49e-07,6;CL:0000677,6.49e-07,6;CL:0000584,6.49e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.12e-33!43;UBERON:0000344!9.72e-29!15;UBERON:0005409!4.88e-28!59;UBERON:0001242!1.42e-24!13;UBERON:0000060!1.42e-24!13;UBERON:0001262!1.42e-24!13;UBERON:0004786!1.42e-24!13;UBERON:0003350!1.26e-16!9;UBERON:0004808!1.26e-16!9;UBERON:0001277!1.26e-16!9;UBERON:0004923!1.80e-16!24;UBERON:0001007!2.41e-14!128;UBERON:0001555!2.41e-14!128;UBERON:0007026!2.41e-14!128;UBERON:0004119!5.51e-14!130;UBERON:0000925!5.51e-14!130;UBERON:0006595!5.51e-14!130;UBERON:0000485!2.88e-13!11;UBERON:0004921!2.25e-12!126;UBERON:0004185!2.25e-12!126;UBERON:0000331!1.07e-07!3;UBERON:0002116!1.07e-07!3;UBERON:0001204!1.07e-07!3;UBERON:0001168!1.07e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.69e-31,31;UBERON:0005409,4.75e-22,47;UBERON:0000344,1.07e-21,15;UBERON:0002108,2.91e-17,4;UBERON:0001242,3.26e-15,13;UBERON:0001262,3.26e-15,13;UBERON:0004786,3.26e-15,13;UBERON:0000331,1.12e-13,3;UBERON:0002116,1.12e-13,3;UBERON:0001204,1.12e-13,3;UBERON:0001168,1.12e-13,3;UBERON:0004923,4.76e-13,24;UBERON:0001962,1.14e-09,2;UBERON:0001961,1.14e-09,2;UBERON:0001744,1.14e-09,2;UBERON:0001007,1.36e-09,116;UBERON:0001555,1.36e-09,116;UBERON:0007026,1.36e-09,116;UBERON:0004119,2.25e-09,118;UBERON:0000925,2.25e-09,118;UBERON:0006595,2.25e-09,118;UBERON:0001155,3.56e-09,2;UBERON:0000059,3.56e-09,2;UBERON:0004921,2.36e-07,114|phase1_expression=0,0.697950815278722,0.909998478779072,0.60492842261366,2.00358291978539,13.4303417529512,19.1562365288331,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,10.7194923271582,7.11168771308227,2.29692785646008,5.59990595006797,5.38678081714723,24.893067948785,8.06496415231778,5.32153225572731,0,0,0,0.288851619751275,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,4.34276993854605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98251269790279,1.32225283331772,0,0,0.257734922644187,0.605050573870028,0.444756087689741,1.33157938278791,3.79623249235609,0.823494773620054,0.754005626400808,0.795825888164603,0.19496408711912,3.59527763461689,1.51296634912286,3.58454291857861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33184669303881,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0.26175594198403,1.16653475962614,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0.302478555410522,0,0,0,0,0,0,0,0,0,0.36630324853453,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p@chr7:28876815..28876836,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=499 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:28876815..28876836,+ | |||
|id=chr7:28876815..28876836,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.26e-16!9;CL:0002251!1.26e-16!9;CL:0000239!2.48e-12!6;CL:0000677!2.48e-12!6;CL:0000212!2.48e-12!6;CL:0000584!2.48e-12!6;CL:0000075!1.90e-10!7;CL:0000066!2.76e-09!25;CL:0002076!3.04e-09!15;CL:0000473!2.33e-07!3;CL:0000627!2.33e-07!3;CL:0000682!2.33e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,5.12e-13,3;CL:0000239,6.49e-07,6;CL:0000677,6.49e-07,6;CL:0000584,6.49e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.12e-33!43;UBERON:0000344!9.72e-29!15;UBERON:0005409!4.88e-28!59;UBERON:0001242!1.42e-24!13;UBERON:0000060!1.42e-24!13;UBERON:0001262!1.42e-24!13;UBERON:0004786!1.42e-24!13;UBERON:0003350!1.26e-16!9;UBERON:0004808!1.26e-16!9;UBERON:0001277!1.26e-16!9;UBERON:0004923!1.80e-16!24;UBERON:0001007!2.41e-14!128;UBERON:0001555!2.41e-14!128;UBERON:0007026!2.41e-14!128;UBERON:0004119!5.51e-14!130;UBERON:0000925!5.51e-14!130;UBERON:0006595!5.51e-14!130;UBERON:0000485!2.88e-13!11;UBERON:0004921!2.25e-12!126;UBERON:0004185!2.25e-12!126;UBERON:0000331!1.07e-07!3;UBERON:0002116!1.07e-07!3;UBERON:0001204!1.07e-07!3;UBERON:0001168!1.07e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.69e-31,31;UBERON:0005409,4.75e-22,47;UBERON:0000344,1.07e-21,15;UBERON:0002108,2.91e-17,4;UBERON:0001242,3.26e-15,13;UBERON:0001262,3.26e-15,13;UBERON:0004786,3.26e-15,13;UBERON:0000331,1.12e-13,3;UBERON:0002116,1.12e-13,3;UBERON:0001204,1.12e-13,3;UBERON:0001168,1.12e-13,3;UBERON:0004923,4.76e-13,24;UBERON:0001962,1.14e-09,2;UBERON:0001961,1.14e-09,2;UBERON:0001744,1.14e-09,2;UBERON:0001007,1.36e-09,116;UBERON:0001555,1.36e-09,116;UBERON:0007026,1.36e-09,116;UBERON:0004119,2.25e-09,118;UBERON:0000925,2.25e-09,118;UBERON:0006595,2.25e-09,118;UBERON:0001155,3.56e-09,2;UBERON:0000059,3.56e-09,2;UBERON:0004921,2.36e-07,114 | |||
|phase1_expression=0,0.697950815278722,0.909998478779072,0.60492842261366,2.00358291978539,13.4303417529512,19.1562365288331,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,10.7194923271582,7.11168771308227,2.29692785646008,5.59990595006797,5.38678081714723,24.893067948785,8.06496415231778,5.32153225572731,0,0,0,0.288851619751275,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,4.34276993854605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98251269790279,1.32225283331772,0,0,0.257734922644187,0.605050573870028,0.444756087689741,1.33157938278791,3.79623249235609,0.823494773620054,0.754005626400808,0.795825888164603,0.19496408711912,3.59527763461689,1.51296634912286,3.58454291857861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33184669303881,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0.26175594198403,1.16653475962614,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0.302478555410522,0,0,0,0,0,0,0,0,0,0.36630324853453,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr7:28876815..28876836,+ | |||
}} |
Revision as of 13:00, 14 September 2013
Short description: | p@chr7:28876815..28876836, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:28876815..28876836, + |
Coexpression cluster: | MCL_coexpression_mm9:499 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 5.12e-13 | 3 |
brush border epithelial cell | 6.49e-07 | 6 |
gut absorptive cell | 6.49e-07 | 6 |
enterocyte | 6.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
intestine | 6.69e-31 | 31 |
gastrointestinal system | 4.75e-22 | 47 |
mucosa | 1.07e-21 | 15 |
small intestine | 2.91e-17 | 4 |
intestinal mucosa | 3.26e-15 | 13 |
wall of intestine | 3.26e-15 | 13 |
gastrointestinal system mucosa | 3.26e-15 | 13 |
ileal mucosa | 1.12e-13 | 3 |
ileum | 1.12e-13 | 3 |
mucosa of small intestine | 1.12e-13 | 3 |
wall of small intestine | 1.12e-13 | 3 |
organ component layer | 4.76e-13 | 24 |
gut-associated lymphoid tissue | 1.14e-09 | 2 |
mucosa-associated lymphoid tissue | 1.14e-09 | 2 |
lymphoid tissue | 1.14e-09 | 2 |
digestive system | 1.36e-09 | 116 |
digestive tract | 1.36e-09 | 116 |
primitive gut | 1.36e-09 | 116 |
endoderm-derived structure | 2.25e-09 | 118 |
endoderm | 2.25e-09 | 118 |
presumptive endoderm | 2.25e-09 | 118 |
colon | 3.56e-09 | 2 |
large intestine | 3.56e-09 | 2 |
subdivision of digestive tract | 2.36e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.