FFCP PHASE1:Hg19::chr11:132813063..132813077,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4978 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8143 | |||
|TSSclassifier=strong | |||
|UniProt=A8K0Y0,Q14982,Q7Z3W6 | |||
|association_with_transcript=-26bp_to_NM_002545,uc001qgs.2,uc001qgt.2,uc010sck.1_5end | |||
|description=CAGE_peak_17_at_OPCML_5end | |||
|id=chr11:132813063..132813077,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002573;3.86e-38;2!CL:0002586;1.09e-10;3!CL:0000149;2.43e-08;4!CL:0000243;1.38e-07;15!CL:0000125;1.38e-07;15!CL:0000095;6.97e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002573,4.67e-38,2;CL:0002586,9.90e-11,3;CL:0000149,2.26e-08,4;CL:0000243,1.42e-07,15;CL:0000125,1.42e-07,15;CL:0000030,1.42e-07,15;CL:0000339,1.42e-07,15;CL:0000095,7.18e-07,17;CL:0000123,7.18e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0006215;8.37e-39;3!UBERON:0003056;8.17e-11;3!CL:0000339;1.38e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.13e-25!94;UBERON:0001016!1.13e-25!94;UBERON:0001049!3.23e-25!57;UBERON:0005068!3.23e-25!57;UBERON:0006241!3.23e-25!57;UBERON:0007135!3.23e-25!57;UBERON:0005743!6.74e-25!86;UBERON:0001893!7.11e-25!34;UBERON:0002616!3.66e-24!59;UBERON:0001869!9.64e-24!32;UBERON:0001950!3.53e-23!20;UBERON:0002791!1.21e-22!33;UBERON:0002346!5.12e-22!90;UBERON:0002020!5.46e-22!34;UBERON:0003528!5.46e-22!34;UBERON:0003075!1.58e-21!86;UBERON:0007284!1.58e-21!86;UBERON:0000955!2.22e-21!69;UBERON:0006238!2.22e-21!69;UBERON:0000956!5.44e-21!25;UBERON:0000203!5.44e-21!25;UBERON:0002619!6.92e-21!22;UBERON:0001017!1.79e-20!82;UBERON:0002780!6.01e-20!41;UBERON:0001890!6.01e-20!41;UBERON:0006240!6.01e-20!41;UBERON:0003080!2.24e-19!42;UBERON:0003056!2.24e-19!61;UBERON:0000033!1.51e-16!123;UBERON:0000153!1.99e-15!129;UBERON:0007811!1.99e-15!129;UBERON:0000924!1.75e-13!173;UBERON:0006601!1.75e-13!173;UBERON:0007023!4.45e-13!115;UBERON:0004121!6.07e-13!169;UBERON:0001872!8.35e-11!5;UBERON:0001871!1.02e-09!7;UBERON:0004733!5.59e-09!12;UBERON:0002028!5.59e-09!12;UBERON:0007277!5.59e-09!12;UBERON:0004732!3.11e-08!13;UBERON:0001876!7.60e-08!2;UBERON:0003076!4.83e-07!15;UBERON:0003057!4.83e-07!15;UBERON:0000064!8.23e-07!219;UBERON:0000966!9.23e-07!5;UBERON:0005388!9.23e-07!5;UBERON:0001802!9.23e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.61e-23;5!UBERON:0005388;1.61e-23;5!UBERON:0001802;1.61e-23;5!UBERON:0002037;5.35e-20;6!UBERON:0002680;1.08e-13;9!UBERON:0001895;1.08e-13;9!UBERON:0000010;1.80e-13;8!UBERON:0001781;1.09e-10;3!UBERON:0001782;1.09e-10;3!UBERON:0004733;1.60e-10;12!UBERON:0002028;1.60e-10;12!UBERON:0004732;8.71e-10;13!UBERON:0000019;6.38e-07;19!UBERON:0000047;6.38e-07;19!UBERON:0004088;6.38e-07;19!UBERON:0010230;6.38e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,5.35e-20,6;UBERON:0006215,5.35e-20,6;UBERON:0000966,7.13e-20,6;UBERON:0005388,7.13e-20,6;UBERON:0001802,7.13e-20,6;UBERON:0002680,1.08e-13,9;UBERON:0001895,1.08e-13,9;UBERON:0010092,1.08e-13,9;UBERON:0000010,1.91e-13,8;UBERON:0001782,9.90e-11,3;UBERON:0005424,9.90e-11,3;UBERON:0004733,1.60e-10,12;UBERON:0002028,1.60e-10,12;UBERON:0007277,1.60e-10,12;UBERON:0004732,8.71e-10,13;UBERON:0003076,1.31e-08,15;UBERON:0003057,1.31e-08,15;UBERON:0001781,2.26e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0.248107807818777,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28225062558195,0.328014645699706,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,0,0,0,0,0,0.933118762985422,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09621927807429,2.36438095162838,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.90392296312213,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425246896606173,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33946505990805,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0.504143392443436,0.414943514785307,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.675375846183947,0.781078098613847,0.206686796501184,0.443910671357348,0,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,0.394636641377094,0,0,0,0,0,0,0,0,2.93053831124291,0,0,0,0,0,0,0,0,1.18332000730565,1.27820107138737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0.0644578879735772,0,0,0,0,0,0.458729283404541,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p17@OPCML | |||
}} |
Revision as of 11:18, 11 January 2014
Short description: | p17@OPCML |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_OPCML_5end |
Coexpression cluster: | NA |
Association with transcript: | -26bp_to_NM_002545, uc001qgs.2, uc001qgt.2, uc010sck.1_5end |
EntrezGene: | OPCML |
HGNC: | 8143 |
UniProt: | A8K0Y0Q14982Q7Z3W6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Schwann cell | 4.67e-38 | 2 |
retinal pigment epithelial cell | 9.90e-11 | 3 |
visual pigment cell | 2.26e-08 | 4 |
glial cell (sensu Vertebrata) | 1.42e-07 | 15 |
glial cell | 1.42e-07 | 15 |
glioblast | 1.42e-07 | 15 |
glioblast (sensu Vertebrata) | 1.42e-07 | 15 |
neuron associated cell | 7.18e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 7.18e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 5.35e-20 | 6 |
rhombic lip | 5.35e-20 | 6 |
retina | 7.13e-20 | 6 |
photoreceptor array | 7.13e-20 | 6 |
posterior segment of eyeball | 7.13e-20 | 6 |
regional part of metencephalon | 1.08e-13 | 9 |
metencephalon | 1.08e-13 | 9 |
future metencephalon | 1.08e-13 | 9 |
peripheral nervous system | 1.91e-13 | 8 |
pigmented layer of retina | 9.90e-11 | 3 |
presumptive retinal pigmented epithelium | 9.90e-11 | 3 |
segmental subdivision of hindbrain | 1.60e-10 | 12 |
hindbrain | 1.60e-10 | 12 |
presumptive hindbrain | 1.60e-10 | 12 |
segmental subdivision of nervous system | 8.71e-10 | 13 |
posterior neural tube | 1.31e-08 | 15 |
chordal neural plate | 1.31e-08 | 15 |
layer of retina | 2.26e-08 | 4 |