FFCP PHASE1:Hg19::chr13:107028964..107028978,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=728192 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=42809 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=53bp_to_ENST00000435024,ENST00000439790,NR_034119,uc001vqg.2,uc001vqh.2_5end | |||
|coexpression_cluster_id=C164 | |||
|description=CAGE_peak_2_at_LINC00460_5end | |||
|id=chr13:107028964..107028978,+ | |||
|ontology_enrichment_celltype=CL:0000243!4.56e-12!15;CL:0000125!4.56e-12!15;CL:0000030!4.56e-12!15;CL:0000339!4.56e-12!15;CL:0000095!1.79e-10!17;CL:0000123!1.79e-10!17;CL:0000128!1.53e-08!7;CL:0000126!1.53e-08!7;CL:0000127!1.53e-08!7;CL:0002453!1.53e-08!7 | |||
|ontology_enrichment_celltype_v019=CL:1001319;8.94e-11;1!CL:1000600;8.94e-11;1!CL:0002149;7.30e-07;6!CL:0002255;7.30e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,8.95e-11,1;CL:1000600,8.95e-11,1;CL:0000062,5.34e-08,11;CL:0000375,5.34e-08,11;CL:0000335,5.34e-08,11;CL:0002149,5.75e-07,6;CL:0002255,5.75e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000335;4.90e-08;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:201;4.21e-14;6!DOID:0060100;4.21e-14;6!DOID:5662;8.14e-11;1!DOID:3347;1.50e-10;1!DOID:0060085;2.87e-10;1!DOID:3165;2.87e-10;1!DOID:0060121;2.87e-10;1!DOID:3111;2.87e-10;1!DOID:2438;2.87e-10;1!DOID:4418;2.87e-10;1!DOID:3603;2.87e-10;1!DOID:3001;7.30e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:201,5.90e-14,6;DOID:0060100,5.90e-14,6;DOID:5662,8.14e-11,1;DOID:3347,1.43e-10,1;DOID:0060085,3.96e-10,1;DOID:3165,3.96e-10,1;DOID:0060121,3.96e-10,1;DOID:2438,3.96e-10,1;DOID:4418,3.96e-10,1;DOID:3111,4.75e-10,1;DOID:3603,4.75e-10,1;DOID:14566,3.98e-08,239;DOID:0050687,2.91e-07,143;DOID:162,3.18e-07,235;DOID:305,3.53e-07,106;DOID:3001,5.75e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000475!9.22e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0004913;7.40e-11;1!UBERON:0003703;7.40e-11;1!UBERON:0001174;7.40e-11;1!UBERON:0004914;7.40e-11;1!UBERON:0004645;8.94e-11;1!UBERON:0001256;8.94e-11;1!UBERON:0001259;8.94e-11;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,7.40e-11,1;UBERON:0003703,7.40e-11,1;UBERON:0001174,7.40e-11,1;UBERON:0004914,7.40e-11,1;UBERON:0004645,8.95e-11,1;UBERON:0001256,8.95e-11,1;UBERON:0001259,8.95e-11,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0.487932798790507,0.369363174230364,0.204000691244253,0,0.286235987131057,0.821246550437305,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,1.2333377420858,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0,0.469737994575059,1.94247533241758,0.702254033511242,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206105058476878,0,0,0,0,0,0.0920498986422993,0,0,0.503760491138201,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0.0925884451585296,0,0,1.44331342025273,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0.93733833986777,0.503946384596579,0.425325291727159,0.358234090811393,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.112131084345361,0.43596006883328,0.4400297149257,0,0,0,0,0,0.257207374262142,0,0.799266537048298,0,0,0.823240336780769,0.65147236858747,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.5481500811197,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0.200506470303285,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0,0,0,1.34324852833307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275673144969061,0.644521469209642,0.145016693914229,0.170453254832202,0,0.330569830721956,0,0,0,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0.316379424718726,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,1.22722419002586,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.901940516486955,0,0.664653872707185,0.330991955875499,0.627865836814451,0,0.284609546029793,1.8027707491708,0,0,0.435296032902013,0,0,0,0,0,0,0,0,0.822251547880505,1.19228767021794,0.126621591911757,0,2.72539988855215,0,0.999048047910651,0.288180834308212,0,0,1.7286575758578,0.124252535565433,0,0.135904206073614,0.104602846312333,0,5.49006120812886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.528001682597033,0,0,0,0,0,0,0,0,0,0.082092520749339,0.511164065356265,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19170628885091,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0.285465333544967,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0.477890301491107,0,0,0,0,0,0,0,0,0,0.214821114084977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0.327609848846413,0,1.05656061679314,0,0,0,1.13503190713367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0.0981477185010256,0.235939446695481,0,0.231051332300676,0,2.7614397042404,0,0,0,0,0,0,18.1862986046966,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.05993644355867,0,0,0.118193840883968,0,0,0.157115589916002,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,1.65664801022791,0.852134047591577,0,0,0.31020638566432,1.91107787795487,0,30.7210231215711,0,0,0,0,0,0,0,0,0,0,0.452888530700021,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,4.58763333230399,0.160482733378337,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,6.10524514582309,0,0,0.179650404213174,0,0,0,0,0,0 | |||
|short_description=p2@LINC00460 | |||
}} |
Revision as of 18:34, 11 January 2014
Short description: | p2@LINC00460 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LINC00460_5end |
Coexpression cluster: | C164_signet_corpus_optic_mucinous_substantia_salivary_choriocarcinoma |
Association with transcript: | 53bp_to_ENST00000435024, ENST00000439790, NR_034119, uc001vqg.2, uc001vqh.2_5end |
EntrezGene: | LINC00460 |
HGNC: | 42809 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 8.95e-11 | 1 |
lower urinary tract cell | 8.95e-11 | 1 |
osteoblast | 5.34e-08 | 11 |
osteoprogenitor cell | 5.34e-08 | 11 |
mesenchyme condensation cell | 5.34e-08 | 11 |
epithelial cell of uterus | 5.75e-07 | 6 |
stromal cell of endometrium | 5.75e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 7.40e-11 | 1 |
extrahepatic bile duct | 7.40e-11 | 1 |
common bile duct | 7.40e-11 | 1 |
duodenal papilla | 7.40e-11 | 1 |
urinary bladder urothelium | 8.95e-11 | 1 |
wall of urinary bladder | 8.95e-11 | 1 |
mucosa of urinary bladder | 8.95e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
connective tissue cancer | 5.90e-14 | 6 |
musculoskeletal system cancer | 5.90e-14 | 6 |
pleomorphic carcinoma | 8.14e-11 | 1 |
osteosarcoma | 1.43e-10 | 1 |
organ system benign neoplasm | 3.96e-10 | 1 |
skin benign neoplasm | 3.96e-10 | 1 |
integumentary system benign neoplasm | 3.96e-10 | 1 |
dermis tumor | 3.96e-10 | 1 |
cutaneous fibrous histiocytoma | 3.96e-10 | 1 |
cystadenocarcinoma | 4.75e-10 | 1 |
mucinous cystadenocarcinoma | 4.75e-10 | 1 |
disease of cellular proliferation | 3.98e-08 | 239 |
cell type cancer | 2.91e-07 | 143 |
cancer | 3.18e-07 | 235 |
carcinoma | 3.53e-07 | 106 |
female reproductive endometrioid cancer | 5.75e-07 | 6 |