FFCP PHASE1:Hg19::chr16:19429197..19429221,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79838 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22999 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=179bp_to_ENST00000542583,uc010var.1_5end | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_1_at_TMC5_5end | |||
|id=chr16:19429197..19429221,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000764;1.38e-10;2!CL:0000558;1.38e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,1.56e-10,2;CL:0000765,1.56e-10,2;CL:0000050,1.56e-10,2;CL:0000038,1.56e-10,2;CL:0000558,1.56e-10,2;CL:0000547,1.56e-10,2;CL:0000549,1.56e-10,2;CL:0000550,1.56e-10,2;CL:0000552,1.56e-10,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3493!3.04e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3493;1.44e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.40e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.46e-16!115;UBERON:0004921!2.40e-15!129;UBERON:0004185!2.40e-15!129;UBERON:0004119!3.15e-14!169;UBERON:0000925!3.15e-14!169;UBERON:0006595!3.15e-14!169;UBERON:0001007!2.47e-12!155;UBERON:0001555!2.47e-12!155;UBERON:0007026!2.47e-12!155;UBERON:0005409!2.79e-12!35;UBERON:0000160!3.46e-10!27;UBERON:0000077!7.28e-10!130;UBERON:0001041!1.13e-07!98;UBERON:0003127!4.99e-07!2;UBERON:0002394!8.63e-07!4;UBERON:0003928!8.63e-07!4;UBERON:0000341!9.10e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;2.41e-20;22!UBERON:0002108;5.43e-17;4!UBERON:0000160;5.69e-17;17!UBERON:0004921;1.41e-14;33!UBERON:0003127;3.34e-11;2!UBERON:0000341;8.65e-11;2!UBERON:0002114;7.26e-08;2!UBERON:0000059;1.87e-07;11!UBERON:0002294;6.80e-07;7!UBERON:0001173;6.80e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,8.88e-18,25;UBERON:0002108,5.43e-17,4;UBERON:0000160,5.81e-17,17;UBERON:0003127,3.34e-11,2;UBERON:0004921,9.41e-11,118;UBERON:0000341,9.55e-11,2;UBERON:0001007,4.33e-09,145;UBERON:0001555,4.33e-09,145;UBERON:0007026,4.33e-09,145;UBERON:0004119,7.96e-09,160;UBERON:0000925,7.96e-09,160;UBERON:0006595,7.96e-09,160;UBERON:0002114,7.39e-08,2;UBERON:0000059,1.90e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44076983047484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.06963827304308,2.3529190592241,0,0,0,2.67906630284078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.510450849978337,1.92199783625545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57746442951761,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.42707567183837,0,0,0,0,0,0,0,0,0,0,0,0,3.98495976502139,1.38141957765574,0,0,0,0,0.449341755736634,1.79021174675609,0,0,0,0,0,0,0,0,0,4.34999745260876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,0,0.46112780877612,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.632994193584081,0.163232808159148,0,0,0,94.4726788895662,10.9985426088053,0,0,0,0.067401132980677,0,0,0,0.586993856796269,0,0,14.5188859258397,0,0,0,0,0,0,0,0,0,0,0,0,0,5.94070672022902,0,0,0,0,0.0969890164884194,0,1.58186518546373,0,0,0,0,0,9.17847877379216,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,8.1158433551448,22.6374199343519,0.828478110694391,0,0,2.55764456599881,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.2592639132629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451261970095544,0,2.34454203369928,0,0,18.3341546909136,0,0,0,0,0,0,0,0,1.02209942111676,0,0,0,0.227662191351298,0.975726071789027,0,0,0,0,0.709163045303809,0,2.11931350696388,0,0,5.47895232305697,0,0,0.214429632529969,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,34.9414831670265,30.2356453956028,0,0,0,0.971421986118279,0,0,0,0,0,0.150962843566674,137.833046380789,18.3590030823324,8.46571133450741,0,40.7720426485813,0,0,0,0,0,0.0644578879735772,0,34.1038022736806,0,2.80844783412089,4.3820183294791,0.458729283404541,0,0,0,0,24.8642615042238,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,3.19850972851471,4.04709533488359,0,0,0,0,0,0.870866991587845,0,0.606168477131288,45.4001560135641,3.32660356546013,0,0,0,0,0,0.977931553462932,0.406896178315738,0.665756774185513,0,0 | |||
|short_description=p1@TMC5 | |||
}} |
Revision as of 02:37, 12 January 2014
Short description: | p1@TMC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMC5_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 179bp_to_ENST00000542583, uc010var.1_5end |
EntrezGene: | TMC5 |
HGNC: | 22999 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 1.56e-10 | 2 |
erythroblast | 1.56e-10 | 2 |
megakaryocyte-erythroid progenitor cell | 1.56e-10 | 2 |
erythroid progenitor cell | 1.56e-10 | 2 |
reticulocyte | 1.56e-10 | 2 |
proerythroblast | 1.56e-10 | 2 |
basophilic erythroblast | 1.56e-10 | 2 |
polychromatophilic erythroblast | 1.56e-10 | 2 |
orthochromatic erythroblast | 1.56e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 8.88e-18 | 25 |
small intestine | 5.43e-17 | 4 |
intestine | 5.81e-17 | 17 |
open tracheal system trachea | 3.34e-11 | 2 |
subdivision of digestive tract | 9.41e-11 | 118 |
throat | 9.55e-11 | 2 |
digestive system | 4.33e-09 | 145 |
digestive tract | 4.33e-09 | 145 |
primitive gut | 4.33e-09 | 145 |
endoderm-derived structure | 7.96e-09 | 160 |
endoderm | 7.96e-09 | 160 |
presumptive endoderm | 7.96e-09 | 160 |
duodenum | 7.39e-08 | 2 |
large intestine | 1.90e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.40e-11 | 2 |