FFCP PHASE1:Hg19::chr17:27044760..27044783,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83871 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16519 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000395243_5end | |||
|coexpression_cluster_id=C3621 | |||
|description=CAGE_peak_5_at_RAB34_5end | |||
|id=chr17:27044760..27044783,- | |||
|ontology_enrichment_celltype=CL:0000055!4.27e-37!180;CL:0000183!1.03e-20!59;CL:0002321!6.49e-20!248;CL:0000548!3.09e-19!679;CL:0000004!3.09e-19!679;CL:0000255!3.09e-19!679;CL:0000220!3.55e-19!246;CL:0000187!2.08e-18!54;CL:0000012!2.51e-18!682;CL:0000680!3.80e-18!57;CL:0000056!3.80e-18!57;CL:0000355!3.80e-18!57;CL:0000393!2.62e-17!60;CL:0000211!2.62e-17!60;CL:0000222!1.28e-16!119;CL:0000192!1.86e-16!42;CL:0000514!1.86e-16!42;CL:0000057!1.59e-13!75;CL:0000359!7.90e-13!32;CL:0000144!3.46e-11!625;CL:0000066!2.66e-10!254;CL:0000003!2.56e-09!722;CL:0002371!5.17e-08!591 | |||
|ontology_enrichment_celltype_v019=CL:0000192;3.16e-13;43!CL:0000359;5.00e-13;32!CL:0000187;1.14e-11;55!CL:0000393;1.39e-10;61!CL:0000211;1.39e-10;61!CL:0002494;7.72e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,1.77e-21,55;CL:0000680,5.75e-21,58;CL:0000056,5.75e-21,58;CL:0000355,5.75e-21,58;CL:0000393,8.08e-21,61;CL:0000211,8.08e-21,61;CL:0000192,8.65e-19,43;CL:0000514,8.65e-19,43;CL:0002321,3.05e-15,250;CL:0000222,3.09e-15,121;CL:0000359,2.11e-14,32;CL:0000057,4.53e-14,76;CL:0002494,3.85e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000514;3.16e-13;43!CL:0000355;1.50e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.36e-18!83;UBERON:0002329!1.36e-18!83;UBERON:0003077!1.36e-18!83;UBERON:0003059!1.36e-18!83;UBERON:0007282!1.36e-18!83;UBERON:0009618!1.36e-18!83;UBERON:0007285!1.36e-18!83;UBERON:0000486!1.16e-17!82;UBERON:0004290!2.24e-17!70;UBERON:0005256!6.32e-17!143;UBERON:0003104!1.47e-16!238;UBERON:0009142!1.47e-16!238;UBERON:0000481!6.72e-16!347;UBERON:0001134!3.13e-15!61;UBERON:0002036!3.13e-15!61;UBERON:0003082!3.13e-15!61;UBERON:0002100!7.21e-15!216;UBERON:0002385!3.73e-14!63;UBERON:0001015!3.73e-14!63;UBERON:0000383!3.73e-14!63;UBERON:0000475!4.58e-12!365;UBERON:0002049!4.60e-10!79;UBERON:0007798!4.60e-10!79;UBERON:0003914!5.80e-10!118;UBERON:0000119!7.76e-10!312;UBERON:0000483!1.37e-09!309;UBERON:0000490!1.03e-08!138;UBERON:0000468!1.88e-08!659;UBERON:0004872!1.24e-07!84;UBERON:0001637!1.60e-07!42;UBERON:0003509!1.60e-07!42;UBERON:0004572!1.60e-07!42;UBERON:0001048!5.50e-07!168;UBERON:0000922!6.60e-07!612;UBERON:0003103!6.65e-07!69;UBERON:0001801!8.71e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;2.23e-07;11!UBERON:0006554;2.55e-07;30!UBERON:0001008;2.55e-07;30!UBERON:0001801;7.40e-07;14!UBERON:0002113;9.45e-07;24!UBERON:0011143;9.45e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,8.75e-23,78;UBERON:0003104,8.42e-21,160;UBERON:0009142,8.42e-21,160;UBERON:0007524,1.55e-20,73;UBERON:0002329,1.65e-20,71;UBERON:0003059,1.65e-20,71;UBERON:0007282,1.65e-20,71;UBERON:0004290,1.65e-20,71;UBERON:0009618,1.65e-20,71;UBERON:0003077,7.57e-20,72;UBERON:0007285,7.57e-20,72;UBERON:0000486,2.09e-19,83;UBERON:0001134,4.73e-18,62;UBERON:0002036,4.73e-18,62;UBERON:0003082,4.73e-18,62;UBERON:0002385,9.35e-17,64;UBERON:0001015,9.35e-17,64;UBERON:0000383,9.35e-17,64;UBERON:0005256,2.27e-15,122;UBERON:0002100,2.81e-13,199;UBERON:0000490,8.54e-11,148;UBERON:0003914,2.46e-09,117;UBERON:0001637,2.86e-08,42;UBERON:0003509,2.86e-08,42;UBERON:0004572,2.86e-08,42;UBERON:0002049,5.75e-08,78;UBERON:0007798,5.75e-08,78;UBERON:0000119,2.07e-07,309;UBERON:0006876,2.13e-07,11;UBERON:0000483,3.51e-07,306;UBERON:0001801,5.33e-07,14;UBERON:0004573,8.02e-07,33;UBERON:0004571,8.02e-07,33 | |||
|phase1_expression=1.09007027562334,1.2846031433459,0.563817616383885,3.00219895059391,4.91657203870017,2.61701557230111,0,1.89515962028049,0.261185628199839,2.7030733015166,10.4670175195864,2.62129646556207,4.74780560811216,4.70312141248177,6.2965501388304,2.01697543935533,3.01347264011988,1.46062018077475,2.92759679274304,3.93987385845721,6.5280221198161,5.32873026512749,0.85870796139317,2.05311637609326,2.63639543149086,0,0,0,0,0,0,0.919421224478927,3.91567694411725,3.32778609150109,0,0,0.293600439334847,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,9.38981203585091,4.73091478821062,1.44575660953827,2.00535164254356,3.18662341713812,2.3858578411533,1.94653948121054,5.76662384700814,10.6430110782031,8.4321394265401,0.327447688744282,2.5500670180478,0.741568885568859,0.324547393654683,0,0.132957960518865,0,0,0,0,0,0,0.56530794192401,0,1.37559020970034,0.626984899610432,0.516833518338658,0.35576626268671,0,0.805658634218294,0.760272105718513,0.976248230192678,0,1.62028389576352,0.714397826272638,0.44905874525234,0.112611480483322,4.5994991239765,0.949265659568129,0.549605231791222,0,0,1.74437620857014,1.49091585508596,4.30543739659571,1.19168262731897,2.58152958673932,3.19201543978521,13.4562624034154,7.47242970107935,8.38669664618344,1.8672662123986,3.77189881795127,2.28846664358842,3.93529311876822,4.03323147135999,3.51482147750695,4.37024107562449,1.71141546463335,4.93180645820944,2.3486899728753,2.10434827678571,1.26405726032024,1.22492502752936,2.94802361548243,1.03325781175765,2.37600571456411,6.42894016124248,1.82032272387605,5.03032699271367,2.52504170931099,1.25118519871964,1.10825646193673,2.63386572528503,6.12975591598039,3.15499923703853,3.62982986112067,1.61450672119976,4.69826255400848,4.4505699243508,1.20036438433761,4.225153698776,2.31876486041066,2.79175284497385,1.0126579934476,3.11798416515836,0.757301322732344,6.35144300631865,6.30419621593366,1.42003837006646,2.31729825923573,6.10418132317755,0.966304265816484,0.545492241181669,0.286804595389004,4.87894824518382,4.5060121229305,4.88014560051977,4.45742536566093,4.54177531576131,3.28479623168247,3.12899064659632,8.36213219650751,2.76269842704961,3.25057549622385,3.60939740834793,3.54920400119532,4.21461725195254,4.57920956778616,4.41175890929576,5.44698610231015,2.13543557199987,4.71909578560575,4.12065076763227,3.46272441251751,0.738155454624648,5.60967095213783,7.4083322039652,20.5812195939759,0,0,0,0,0,3.25978839567199,0.98775256867763,1.1240175325762,0.502644862058154,1.574003567695,3.58389135841357,6.23960871167747,5.77325368101093,3.94163376915261,3.63966952131047,1.01056513432752,1.38895653772983,0.570762456703795,0,0,0,0,0,0.93733833986777,0.335964256397719,0.850650583454319,1.34337784054272,0.581267877027924,2.30029607499127,0,0.088048434013226,0,0.288239906833923,0,1.0159663086747,0.381988425558278,1.17217447210047,1.71072446022705,1.13110241973656,1.50171528921959,0.571652865261156,2.01835951821649,1.30788020649984,1.68678057388185,5.68795549334222,10.7296933755565,0.845302752556,2.6593811658487,4.16029747645464,8.23063597638855,5.67396528093113,4.52917704327369,4.43231780340257,4.88359444852299,5.76268235746538,1.95441710576241,1.42156779497018,3.95975936466715,0.904318131178758,4.35766729300147,2.0994328148232,0,0,0,3.83399768786532,1.14861935834114,0,1.30303176000821,3.6985738059069,0.179060963239896,0,0,0,0,1.27047312111232,0,0,0,0,0,0,0,4.78496817704646,10.0034104211935,8.13795071099207,2.70362119990049,4.63915370872621,5.20417969611984,3.04567678981054,6.92176029373754,11.3703752027992,10.3473071292505,3.98535359121262,7.19039757312642,2.69339204851057,7.44044398358414,8.23544217146054,0,0,0,0.909382714338778,1.66435439510497,5.44302527993425,1.24053903909388,0.61384789315225,2.52594084989766,1.28139149255701,1.02341449813341,1.76939313257968,4.45254199334973,1.54209693802656,1.9531789784444,1.06765302817952,1.55776328755086,1.74315567689939,0,1.40354529212299,0.460404944679482,2.18147451512753,3.45973219212762,2.49136388422906,5.86559496779635,3.00359814707218,20.3930939985982,7.30696123266303,3.27210049567915,1.13733384070897,1.02056223165909,1.0795795805107,6.16909010761157,11.108803939298,12.0405545725165,2.29388645740534,0.831076008928724,9.17886494360931,0,0,3.07740150139667,5.9042636225947,2.27764876265012,0.103041011647722,1.28197250745681,1.23764249880882,0,0.650060246036521,0,3.28680442193215,5.08360436478326,5.37262861541453,3.72158745708233,2.36324538710202,3.62541734785571,4.85791776271775,2.58192903375538,0.991709492165869,1.34533047155574,0.893288987462089,0.809262246844399,8.36721988735114,1.88887408098384,3.485186350803,3.69640296211307,5.32306030317022,3.47973196830029,5.5597265731176,4.57999637574372,3.72158369359667,4.42931194606216,3.43134349062885,6.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| |||
|short_description=p5@RAB34 | |||
}} |
Revision as of 14:25, 20 January 2014
Short description: | p5@RAB34 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RAB34_5end |
Coexpression cluster: | C3621_Hepatic_Renal_Alveolar_Mesenchymal_Trabecular_Smooth_normal |
Association with transcript: | 0bp_to_ENST00000395243_5end |
EntrezGene: | RAB34 |
HGNC: | 16519 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 1.77e-21 | 55 |
muscle precursor cell | 5.75e-21 | 58 |
myoblast | 5.75e-21 | 58 |
multi-potent skeletal muscle stem cell | 5.75e-21 | 58 |
electrically responsive cell | 8.08e-21 | 61 |
electrically active cell | 8.08e-21 | 61 |
smooth muscle cell | 8.65e-19 | 43 |
smooth muscle myoblast | 8.65e-19 | 43 |
embryonic cell | 3.05e-15 | 250 |
mesodermal cell | 3.09e-15 | 121 |
vascular associated smooth muscle cell | 2.11e-14 | 32 |
fibroblast | 4.53e-14 | 76 |
cardiocyte | 3.85e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 8.75e-23 | 78 |
mesenchyme | 8.42e-21 | 160 |
entire embryonic mesenchyme | 8.42e-21 | 160 |
dense mesenchyme tissue | 1.55e-20 | 73 |
somite | 1.65e-20 | 71 |
presomitic mesoderm | 1.65e-20 | 71 |
presumptive segmental plate | 1.65e-20 | 71 |
dermomyotome | 1.65e-20 | 71 |
trunk paraxial mesoderm | 1.65e-20 | 71 |
paraxial mesoderm | 7.57e-20 | 72 |
presumptive paraxial mesoderm | 7.57e-20 | 72 |
multilaminar epithelium | 2.09e-19 | 83 |
skeletal muscle tissue | 4.73e-18 | 62 |
striated muscle tissue | 4.73e-18 | 62 |
myotome | 4.73e-18 | 62 |
muscle tissue | 9.35e-17 | 64 |
musculature | 9.35e-17 | 64 |
musculature of body | 9.35e-17 | 64 |
trunk mesenchyme | 2.27e-15 | 122 |
trunk | 2.81e-13 | 199 |
unilaminar epithelium | 8.54e-11 | 148 |
epithelial tube | 2.46e-09 | 117 |
artery | 2.86e-08 | 42 |
arterial blood vessel | 2.86e-08 | 42 |
arterial system | 2.86e-08 | 42 |
vasculature | 5.75e-08 | 78 |
vascular system | 5.75e-08 | 78 |
cell layer | 2.07e-07 | 309 |
vasculature of organ | 2.13e-07 | 11 |
epithelium | 3.51e-07 | 306 |
anterior segment of eyeball | 5.33e-07 | 14 |
systemic artery | 8.02e-07 | 33 |
systemic arterial system | 8.02e-07 | 33 |