FFCP PHASE1:Hg19::chr17:48272818..48272860,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2197 | |||
|TSSclassifier=strong | |||
|UniProt=P02452 | |||
|association_with_transcript=-199bp_to_J00110,K01228_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_49_at_COL1A1_5end | |||
|id=chr17:48272818..48272860,- | |||
|ontology_enrichment_celltype=CL:0000055!1.72e-35!180;CL:0000057!1.04e-24!75;CL:0000183!3.78e-13!59;CL:0000680!1.76e-12!57;CL:0000056!1.76e-12!57;CL:0000355!1.76e-12!57;CL:0000187!7.77e-12!54;CL:0000393!6.25e-10!60;CL:0000211!6.25e-10!60;CL:0000048!1.03e-09!430;CL:0000723!5.99e-09!436;CL:0002620!2.12e-08!23;CL:0000192!2.87e-08!42;CL:0000514!2.87e-08!42;CL:0000034!3.28e-08!444;CL:0000327!5.53e-07!14;CL:0000499!6.46e-07!27;CL:0002334!7.84e-07!12;CL:0002371!8.00e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000057;2.16e-08;73!CL:0002320;2.70e-07;188!CL:0000134;5.97e-07;55!CL:0000499;6.53e-07;28!CL:0000327;7.36e-07;15!CL:0002620;7.65e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.76e-20,76;CL:0000048,1.54e-11,427;CL:0000723,5.89e-11,433;CL:0000034,3.29e-10,441;CL:0000187,4.08e-09,55;CL:0000680,2.92e-08,58;CL:0000056,2.92e-08,58;CL:0000355,2.92e-08,58;CL:0000192,1.39e-07,43;CL:0000514,1.39e-07,43;CL:0000393,1.68e-07,61;CL:0000211,1.68e-07,61;CL:0002320,3.52e-07,361;CL:0002620,4.86e-07,23;CL:0000499,6.37e-07,28;CL:0000327,8.03e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.51e-15!83;UBERON:0002329!1.51e-15!83;UBERON:0003077!1.51e-15!83;UBERON:0003059!1.51e-15!83;UBERON:0007282!1.51e-15!83;UBERON:0009618!1.51e-15!83;UBERON:0007285!1.51e-15!83;UBERON:0004290!3.12e-13!70;UBERON:0002385!4.22e-13!63;UBERON:0001015!4.22e-13!63;UBERON:0000383!4.22e-13!63;UBERON:0001134!7.29e-13!61;UBERON:0002036!7.29e-13!61;UBERON:0003082!7.29e-13!61;UBERON:0005256!2.04e-11!143;UBERON:0000486!3.15e-10!82;UBERON:0002100!4.24e-08!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;4.46e-09;9!UBERON:0000042;4.46e-09;9!UBERON:0003688;4.54e-09;6!UBERON:0002358;4.54e-09;6!UBERON:0003684;4.54e-09;6!UBERON:0001178;4.54e-09;6!UBERON:0002384;3.67e-08;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,3.77e-09,62;UBERON:0002036,3.77e-09,62;UBERON:0003082,3.77e-09,62;UBERON:0003688,5.34e-09,6;UBERON:0002358,5.34e-09,6;UBERON:0003684,5.34e-09,6;UBERON:0001178,5.34e-09,6;UBERON:0007524,9.27e-09,73;UBERON:0002385,1.30e-08,64;UBERON:0001015,1.30e-08,64;UBERON:0000383,1.30e-08,64;UBERON:0002329,2.39e-08,71;UBERON:0003059,2.39e-08,71;UBERON:0007282,2.39e-08,71;UBERON:0004290,2.39e-08,71;UBERON:0009618,2.39e-08,71;UBERON:0007503,3.29e-08,78;UBERON:0003077,4.07e-08,72;UBERON:0007285,4.07e-08,72;UBERON:0002384,5.32e-08,371;UBERON:0005256,4.10e-07,122;UBERON:0000486,4.39e-07,83;UBERON:0003104,8.20e-07,160;UBERON:0009142,8.20e-07,160 | |||
|phase1_expression=5.4503513781167,3.8538094300377,7.18867460889453,6.00439790118782,6.70441641640932,3.48935409640147,0,0,0,0,0,0.436882744260345,5.01157258634062,0.495065411840187,1.65698687863958,0,0,0.730310090387373,0,1.47745269692145,2.65200898617529,2.5076377718247,0.286235987131057,0.136874425072884,0.502170558379211,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,2.68280343881454,1.66221330396589,5.78302643815306,1.50401373190767,2.31754430337318,4.7717156823066,5.83961844363163,0.378139268656271,2.21729397462564,1.31752178539689,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.4000744059455,2.15271869829786,1.32409180813219,9.17877186396204,0.709336764396714,1.12135520028461,1.06748995729705,4.44001587150888,0.622422070799533,0.538842688278752,0.326923806226917,3.93529311876822,2.88087962239999,0.234321431833797,0.312160076830321,0,0,0.23486899728753,0.323745888736263,0.842704840213491,0.61246251376468,0.245668634623536,0.929932030581889,3.56400857184616,7.66527480763526,3.64064544775211,4.31170885089743,0.673344455816265,0.500474079487857,0,1.31693286264251,3.0648779579902,6.30999847407706,0.794025282120147,2.69084453533293,4.48470516518992,4.4505699243508,2.40072876867522,1.75189299705346,2.31876486041066,2.60563598864226,4.72573730275545,2.24105111870757,1.51460264546469,2.85354685791128,2.26304479546337,2.84007674013291,0.806016785821122,1.3564847384839,0,0,0,0.121973706129595,0,0,0,0,0,3.12899064659632,1.28648187638577,0,0.928735856063958,0,0,0,0,0,0,0,0,0.196221465125346,0,0,1.40241773803446,4.115740113314,7.3504355692771,0,0,0,0,0,0.857839051492628,0,0,0,0,0,2.07986957055916,0,0.115930404975077,1.40890433082986,0,0,0,0,0,0,0,0,0,0.503946384596579,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.672786506072164,0.87192013766656,0.5867062865676,2.71470603091333,0,0.845302752556,1.06375246633948,6.24044621468197,1.02882949704857,0,0.799266537048298,3.43147184779554,11.3950537132203,1.64648067356154,1.30294473717494,1.42156779497018,0,0.301439377059586,0.871533458600294,0.199945982364114,0,0,0,4.0736225433569,6.89171615004683,0,0.434343920002738,0.821905290201534,0.179060963239896,0,0,0,0.128343036279748,0,0,0,0,0.637938751653163,0,0,0,0.613457458595699,1.00034104211935,0.813795071099207,26.4122994144125,13.7390321373815,12.4584907876808,4.80279801470124,3.31040709700491,9.09630016223939,2.0694614258501,0.664225598535437,2.39679919104214,0.781952530212746,5.286631251494,4.11772108573027,0,0,0,0.303127571446259,1.66435439510497,3.62868351995616,7.69134204238208,2.76231551918512,14.0330047216537,9.73857534343327,4.09365799253363,12.0640440857706,4.45254199334973,0.771048469013278,0.355123450626254,0.739144404124282,0,1.04589340613963,0,0.200506470303285,0,0.918515585316854,1.27463817604702,1.70461739447251,0,0,0.784349769176855,0,0,0,0,0,3.08454505380579,0.270946437543853,2.00675909541941,0,0,0,0,0,0,0.328014645699706,0,0,0.54941678891006,0.41254749960294,0,0.650060246036521,1.6068392984416,0.48335359146061,0.616194468458578,0.767518373630648,1.10269257987624,0.537101224341368,1.30515024522806,0.767039646744908,5.16385806751077,0.165284915360978,0,0,0,1.39453664789186,4.40737285562896,0,1.23213432070436,0,0,0.55597265731176,0.715624433709956,1.116475108079,1.89827654831236,4.95638504201945,0.767693373934002,1.28381696410176,0.636406495851874,3.92474320099615,0.719489830333259,5.4907405947211,2.00281083987667,0.606547444719948,0,2.10629228119491,1.95053495635836,0,2.11300293513511,2.04749867111979,3.39373036688911,2.26016233240486,1.10273068709225,0,0,1.15755106853338,5.24715801637306,0.202910376962704,1.239293992399,1.40847801266121,0.430234056612155,1.47373561519682,1.426684205925,0,1.05553817648832,2.30506425071931,0.379473173765715,0.699869440489966,0,0.670302275535787,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,5.59871257791253,0,0,0,0.0986434056369336,0,3.33410970433911,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0.173624994933292,0,0,0,0,0,0,0,0,1.07730361905316,0.113942055847001,0,0.0897576444097721,0,0,1.4655614944298,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0.611030144933625,0,0,0,0,16.8541305932746,0,0,0,0,0,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0.0967563312890851,0,0.0821154570532092,0,0.0882561266915003,3.61569185248852,0,0,0,0,0.0801588202515337,0.426905989478705,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0.859530882839914,0,0.558564802544508,0,0,0.199679000498991,0.429226048136571,0.223171457441873,0.739018197353989,9.36779697210249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0,0,0.76280561296425,1.085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| |||
|short_description=p49@COL1A1 | |||
}} |
Revision as of 16:14, 20 January 2014
Short description: | p49@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_49_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -199bp_to_J00110, K01228_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.76e-20 | 76 |
multi fate stem cell | 1.54e-11 | 427 |
somatic stem cell | 5.89e-11 | 433 |
stem cell | 3.29e-10 | 441 |
muscle cell | 4.08e-09 | 55 |
muscle precursor cell | 2.92e-08 | 58 |
myoblast | 2.92e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.92e-08 | 58 |
smooth muscle cell | 1.39e-07 | 43 |
smooth muscle myoblast | 1.39e-07 | 43 |
electrically responsive cell | 1.68e-07 | 61 |
electrically active cell | 1.68e-07 | 61 |
connective tissue cell | 3.52e-07 | 361 |
skin fibroblast | 4.86e-07 | 23 |
stromal cell | 6.37e-07 | 28 |
extracellular matrix secreting cell | 8.03e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 3.77e-09 | 62 |
striated muscle tissue | 3.77e-09 | 62 |
myotome | 3.77e-09 | 62 |
omentum | 5.34e-09 | 6 |
peritoneum | 5.34e-09 | 6 |
abdominal cavity | 5.34e-09 | 6 |
visceral peritoneum | 5.34e-09 | 6 |
dense mesenchyme tissue | 9.27e-09 | 73 |
muscle tissue | 1.30e-08 | 64 |
musculature | 1.30e-08 | 64 |
musculature of body | 1.30e-08 | 64 |
somite | 2.39e-08 | 71 |
presomitic mesoderm | 2.39e-08 | 71 |
presumptive segmental plate | 2.39e-08 | 71 |
dermomyotome | 2.39e-08 | 71 |
trunk paraxial mesoderm | 2.39e-08 | 71 |
epithelial vesicle | 3.29e-08 | 78 |
paraxial mesoderm | 4.07e-08 | 72 |
presumptive paraxial mesoderm | 4.07e-08 | 72 |
connective tissue | 5.32e-08 | 371 |
trunk mesenchyme | 4.10e-07 | 122 |
multilaminar epithelium | 4.39e-07 | 83 |
mesenchyme | 8.20e-07 | 160 |
entire embryonic mesenchyme | 8.20e-07 | 160 |