FFCP PHASE1:Hg19::chr19:13054556..13054630,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=811 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1455 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=147bp_to_BC107102_5end | |||
|coexpression_cluster_id=C1059 | |||
|description=CAGE_peak_3_at_CALR_5end | |||
|id=chr19:13054556..13054630,- | |||
|ontology_enrichment_celltype=CL:0000548!2.18e-26!679;CL:0000004!2.18e-26!679;CL:0000255!2.18e-26!679;CL:0000012!4.18e-26!682;CL:0000144!1.14e-22!625;CL:0002371!3.92e-20!591;CL:0000055!5.14e-19!180;CL:0000003!5.09e-16!722;CL:0000220!9.72e-15!246;CL:0002321!2.06e-14!248;CL:0000222!1.62e-11!119;CL:0000393!1.80e-09!60;CL:0000211!1.80e-09!60;CL:0000183!2.12e-09!59;CL:0000680!9.55e-09!57;CL:0000056!9.55e-09!57;CL:0000355!9.55e-09!57;CL:0000057!1.10e-08!75;CL:0000048!1.39e-08!430;CL:0000723!1.51e-08!436;CL:0000187!3.36e-08!54;CL:0000063!5.97e-08!578;CL:0000034!5.97e-08!444;CL:0000192!1.76e-07!42;CL:0000514!1.76e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000134;9.93e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.38e-14,250;CL:0000222,1.14e-11,121;CL:0000393,4.06e-09,61;CL:0000211,4.06e-09,61;CL:0000057,4.74e-09,76;CL:0000680,2.11e-08,58;CL:0000056,2.11e-08,58;CL:0000355,2.11e-08,58;CL:0000048,2.52e-08,427;CL:0000723,2.73e-08,433;CL:0000187,7.35e-08,55;CL:0000034,1.01e-07,441;CL:0000192,4.61e-07,43;CL:0000514,4.61e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!2.30e-10!82;UBERON:0005256!8.37e-10!143;UBERON:0000914!8.01e-09!83;UBERON:0002329!8.01e-09!83;UBERON:0003077!8.01e-09!83;UBERON:0003059!8.01e-09!83;UBERON:0007282!8.01e-09!83;UBERON:0009618!8.01e-09!83;UBERON:0007285!8.01e-09!83;UBERON:0004290!1.12e-08!70;UBERON:0000490!1.82e-08!138;UBERON:0003914!1.11e-07!118;UBERON:0002049!1.68e-07!79;UBERON:0007798!1.68e-07!79;UBERON:0001134!2.73e-07!61;UBERON:0002036!2.73e-07!61;UBERON:0003082!2.73e-07!61;UBERON:0001637!4.29e-07!42;UBERON:0003509!4.29e-07!42;UBERON:0004572!4.29e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,5.21e-10,83;UBERON:0007503,7.43e-10,78;UBERON:0000490,1.67e-09,148;UBERON:0005256,4.80e-09,122;UBERON:0003104,2.05e-08,160;UBERON:0009142,2.05e-08,160;UBERON:0002329,2.47e-08,71;UBERON:0003059,2.47e-08,71;UBERON:0007282,2.47e-08,71;UBERON:0004290,2.47e-08,71;UBERON:0009618,2.47e-08,71;UBERON:0007524,2.71e-08,73;UBERON:0003914,6.22e-08,117;UBERON:0003077,7.03e-08,72;UBERON:0007285,7.03e-08,72;UBERON:0002049,3.52e-07,78;UBERON:0007798,3.52e-07,78;UBERON:0001637,4.20e-07,42;UBERON:0003509,4.20e-07,42;UBERON:0004572,4.20e-07,42;UBERON:0001134,5.82e-07,62;UBERON:0002036,5.82e-07,62;UBERON:0003082,5.82e-07,62 | |||
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| |||
|short_description=p3@CALR | |||
}} |
Revision as of 21:34, 20 January 2014
Short description: | p3@CALR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CALR_5end |
Coexpression cluster: | C1059_Fibroblast_Adipocyte_Smooth_Chondrocyte_neuroectodermal_Hair_Preadipocyte |
Association with transcript: | 147bp_to_BC107102_5end |
EntrezGene: | CALR |
HGNC: | 1455 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.38e-14 | 250 |
mesodermal cell | 1.14e-11 | 121 |
electrically responsive cell | 4.06e-09 | 61 |
electrically active cell | 4.06e-09 | 61 |
fibroblast | 4.74e-09 | 76 |
muscle precursor cell | 2.11e-08 | 58 |
myoblast | 2.11e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.11e-08 | 58 |
multi fate stem cell | 2.52e-08 | 427 |
somatic stem cell | 2.73e-08 | 433 |
muscle cell | 7.35e-08 | 55 |
stem cell | 1.01e-07 | 441 |
smooth muscle cell | 4.61e-07 | 43 |
smooth muscle myoblast | 4.61e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 5.21e-10 | 83 |
epithelial vesicle | 7.43e-10 | 78 |
unilaminar epithelium | 1.67e-09 | 148 |
trunk mesenchyme | 4.80e-09 | 122 |
mesenchyme | 2.05e-08 | 160 |
entire embryonic mesenchyme | 2.05e-08 | 160 |
somite | 2.47e-08 | 71 |
presomitic mesoderm | 2.47e-08 | 71 |
presumptive segmental plate | 2.47e-08 | 71 |
dermomyotome | 2.47e-08 | 71 |
trunk paraxial mesoderm | 2.47e-08 | 71 |
dense mesenchyme tissue | 2.71e-08 | 73 |
epithelial tube | 6.22e-08 | 117 |
paraxial mesoderm | 7.03e-08 | 72 |
presumptive paraxial mesoderm | 7.03e-08 | 72 |
vasculature | 3.52e-07 | 78 |
vascular system | 3.52e-07 | 78 |
artery | 4.20e-07 | 42 |
arterial blood vessel | 4.20e-07 | 42 |
arterial system | 4.20e-07 | 42 |
skeletal muscle tissue | 5.82e-07 | 62 |
striated muscle tissue | 5.82e-07 | 62 |
myotome | 5.82e-07 | 62 |