FFCP PHASE1:Hg19::chr20:306489..306564,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6666 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11198 | |||
|TSSclassifier=strong | |||
|UniProt=O15370 | |||
|association_with_transcript=250bp_to_ENST00000342665,NM_006943,uc002wdh.2_5end | |||
|description=CAGE_peak_1_at_SOX12_5end | |||
|id=chr20:306489..306564,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.22e-21!180;CL:0002321!3.10e-16!248;CL:0000220!1.33e-15!246;CL:0000012!4.77e-10!682;CL:0000548!4.92e-10!679;CL:0000004!4.92e-10!679;CL:0000255!4.92e-10!679;CL:0000133!1.03e-09!59;CL:0000333!2.21e-09!41;CL:0000221!3.80e-09!71;CL:0000057!4.08e-09!75;CL:0000183!5.25e-08!59;CL:0000222!9.41e-08!119;CL:0000144!2.55e-07!625;CL:0000066!2.86e-07!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.63e-16,250;CL:0000133,1.01e-09,59;CL:0000333,2.17e-09,41;CL:0000221,3.82e-09,72;CL:0000057,5.41e-09,76;CL:0000222,5.00e-08,121;CL:0000066,3.25e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.92e-13!235;DOID:14566!1.57e-12!239;DOID:0050686!1.79e-08!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.01e-13,235;DOID:14566,1.61e-12,239;DOID:0050686,1.76e-08,137 | |||
|ontology_enrichment_uberon=UBERON:0002100!4.01e-11!216;UBERON:0005256!8.01e-10!143;UBERON:0000475!1.45e-09!365;UBERON:0000490!4.16e-09!138;UBERON:0003104!4.70e-09!238;UBERON:0009142!4.70e-09!238;UBERON:0000119!1.46e-08!312;UBERON:0000481!3.70e-08!347;UBERON:0000483!5.44e-08!309;UBERON:0003914!6.38e-08!118;UBERON:0005177!6.76e-08!107;UBERON:0005172!6.27e-07!55;UBERON:0005173!6.27e-07!55 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,3.22e-11,160;UBERON:0009142,3.22e-11,160;UBERON:0002100,3.30e-11,199;UBERON:0000490,1.38e-10,148;UBERON:0005256,8.10e-09,122;UBERON:0000119,1.74e-08,309;UBERON:0007503,3.41e-08,78;UBERON:0005177,4.25e-08,101;UBERON:0000483,6.46e-08,306;UBERON:0003914,7.60e-08,117;UBERON:0005172,6.49e-07,54;UBERON:0005173,6.49e-07,54 | |||
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| |||
|short_description=p1@SOX12 | |||
}} |
Revision as of 09:45, 21 January 2014
Short description: | p1@SOX12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SOX12_5end |
Coexpression cluster: | NA |
Association with transcript: | 250bp_to_ENST00000342665, NM_006943, uc002wdh.2_5end |
EntrezGene: | SOX12 |
HGNC: | 11198 |
UniProt: | O15370 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.63e-16 | 250 |
neurectodermal cell | 1.01e-09 | 59 |
migratory neural crest cell | 2.17e-09 | 41 |
ectodermal cell | 3.82e-09 | 72 |
fibroblast | 5.41e-09 | 76 |
mesodermal cell | 5.00e-08 | 121 |
epithelial cell | 3.25e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 3.22e-11 | 160 |
entire embryonic mesenchyme | 3.22e-11 | 160 |
trunk | 3.30e-11 | 199 |
unilaminar epithelium | 1.38e-10 | 148 |
trunk mesenchyme | 8.10e-09 | 122 |
cell layer | 1.74e-08 | 309 |
epithelial vesicle | 3.41e-08 | 78 |
trunk region element | 4.25e-08 | 101 |
epithelium | 6.46e-08 | 306 |
epithelial tube | 7.60e-08 | 117 |
abdomen element | 6.49e-07 | 54 |
abdominal segment element | 6.49e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.01e-13 | 235 |
disease of cellular proliferation | 1.61e-12 | 239 |
organ system cancer | 1.76e-08 | 137 |