FFCP PHASE1:Hg19::chr3:42201653..42201668,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22906 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29947 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UPV9,C9JC32 | |||
|association_with_transcript=0bp_to_ENST00000341421,ENST00000396175,NM_014965,uc003cla.2_5end | |||
|description=CAGE_peak_6_at_TRAK1_5end | |||
|id=chr3:42201653..42201668,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.12e-15!254 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.39e-07;7!CL:0000586;1.39e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.85e-11,253;CL:0000039,1.08e-07,7;CL:0000586,1.08e-07,7;CL:0000223,3.34e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.94e-13!106;DOID:0050687!2.18e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.71e-13,106;DOID:0050687,2.05e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.05e-13!169;UBERON:0000925!4.05e-13!169;UBERON:0006595!4.05e-13!169;UBERON:0001007!1.52e-11!155;UBERON:0001555!1.52e-11!155;UBERON:0007026!1.52e-11!155;UBERON:0004921!2.37e-11!129;UBERON:0004185!2.37e-11!129;UBERON:0000077!3.16e-09!130;UBERON:0000464!1.17e-08!104;UBERON:0000466!2.80e-08!126;UBERON:0000481!9.56e-08!347;UBERON:0005409!1.13e-07!35;UBERON:0001041!2.51e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;4.42e-09;22!UBERON:0004921;5.99e-09;33!UBERON:0000160;5.46e-07;17!UBERON:0003296;6.07e-07;4!UBERON:0010133;6.07e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,2.50e-11,118;UBERON:0004119,1.28e-09,160;UBERON:0000925,1.28e-09,160;UBERON:0006595,1.28e-09,160;UBERON:0001007,5.62e-09,145;UBERON:0001555,5.62e-09,145;UBERON:0007026,5.62e-09,145;UBERON:0005409,1.26e-07,25;UBERON:0000160,5.15e-07,17;UBERON:0003296,7.67e-07,4;UBERON:0010133,7.67e-07,4 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.737201809504527,2.09340350391728,1.09220686065086,0,0.247532705920093,0,0,0,0,0,0,0.408001382488506,0.313454721478088,0,0.273748850145768,0.125542639594803,0,0,0,0,0,0,0.919421224478927,0.6024118375565,1.84877005083394,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,3.17654341242288,0.977766799900771,0.946895611469467,0,0.668462741311041,0.294605907474837,0.443067789167242,0,0.640456598628376,0.780356085359269,0.493313713811028,0.829050053357545,0.289803085735052,0,0.267540828089713,0,0.226618685395132,0.383220493601921,0,0,0.637130828648193,0,0,0.301150238155546,0.383959833463255,0,0,0.821127996921047,0,0,0.144824403882799,0,0,0.383587685530591,0,0,0,0,0,1.70162670895322,0.886917589850256,1.14185221401064,0.72038491523742,0,0.370784442784429,0.324547393654683,0,0.132957960518865,1.66943437013739,0,1.48583000531826,0,0,1.04142150482278,0,0.419499436209906,0.550236083880135,0.417989933073621,0,0.71153252537342,0,0,0,0,1.10298924103761,0.81014194788176,0.625098097988558,2.2452937262617,1.12611480483322,1.53316637465883,0,1.46561395144326,0,0,0,0,0,0.529636723252875,0.286836620748814,0,0,0,0,0.311211035399766,0.404132016209064,0.326923806226917,1.51357427644931,0.576175924479999,0,0,0,0,0.117434498643765,0.647491777472526,0.421352420106746,0.204154171254893,0.982674538494144,0.103325781175765,0,0,0,0,0.336672227908132,0.875829639103749,0,0,0,0,0.113432183160021,0.179389635688862,0,0.211931901159562,0,0.103052529238439,0.257640540045629,0,0,0,0.252433774244115,0.0920498986422993,0.161646056818812,0,0.10075209822764,0,0,0.545492241181669,0.573609190778008,1.21973706129595,1.59035721985782,1.2781333715647,1.65857688024593,2.52320850875628,2.18986415445498,0,0,0,0,0,0.473227200159376,0.337169380156203,0,0.110293972732394,0.435758888184812,0.237270619111097,0.134831308160164,0.196221465125346,0,0,1.40241773803446,0.4115740113314,0,0,0,0.590789906681404,0,2.7057456479485,0.343135620597051,0.329250856225877,0,0.502644862058154,0.185176890317059,0,1.03993478527958,0,1.27523445472584,0.587043471179108,0,0,0,1.58040879591855,2.57545848628462,0,0,0.148631162288728,0,0.16798212819886,0,0.985143749731331,1.45316969256981,0,0,0.088048434013226,0,0.144119953416961,0,0.253991577168676,0.763976851116555,1.17217447210047,0,0,0.600686115687835,0.285826432630578,0.672786506072164,0,0.80672114403045,0.129271715757778,0,0,0,0,1.28603687131071,0,0.532844358032199,0,0,0.823240336780769,0,0,0,0,0.871533458600294,0.199945982364114,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,1.00034104211935,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,1.37060810223918,0,0.206768026122887,0,0.213455115606889,0,0,0.907170879989041,0,0,0,0.128139149255701,0,0,0,0,0.177561725313127,0.164254312027618,1.55776328755086,0.116210378459959,2.65890789101569,1.20303882181971,1.47329582297434,0,0,0,1.80479845162965,0.924184045252977,0.784349769176855,0,0.527758144464379,0,0.680374821106063,0.863663664408557,0,0.812839312631559,1.00337954770971,0.764628819135115,1.66215201785745,1.11937377361089,0.877039506583738,0.522870902049801,0,0.328014645699706,0,0.412164046590889,0,0,0,0,0,0.096670718292122,0.308097234229289,0.15350367472613,0.275673144969061,0.644521469209642,0.435050081742686,0.0852266274161009,0.267096106940212,1.32227932288782,1.34533047155574,5.10450849978336,1.2138933702666,0,0.31481234683064,0,0.924100740528266,0,0,0,0,0.744316738719335,0,0,0,0,0.318203247925937,0,0.179872457583315,0,0.117812402345686,0.404364963146632,0,0.421258456238981,0.975267478179181,0.243713489631284,0,0,0.141405431953713,1.13008116620243,0,0,0,0,0,0.202910376962704,0,0.281695602532241,0.143411352204052,0,0,0,0.211107635297664,0,0.75894634753143,2.44954304171488,1.63577591633371,0.670302275535787,0,0.564862804660675,0.43050537267123,0,0.886860307073351,0.689170200620878,2.02979043692868,5.35246044999663,1.70894156152249,0,1.23408681925858,0.648473311192717,1.08006287447623,3.17250070517708,0,0,0.735120647943095,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,7.11134053551235,0.146508179271894,0,0,0,3.34242278632766,0,4.30024982938925,0,0,0,0,2.74463030566391,0.597743964753209,0,0,0,1.96935688737711,0,1.97710372524119,6.98182581234876,0,4.83352687620975,2.3948309234694,0,0.969332746095218,0.185536196323703,0,0.7812832832557,1.22443999994674,1.44999915086959,1.93448862085349,4.57656570526979,0.709163045303809,0.344743373241465,0,0,0.885741385813839,0.120596438625408,0,0,0.295547618953547,0.87754158861589,1.0893846351899,1.39423744278603,0.153900517007594,0,0.69169171316418,7.36012684160132,8.69178975376064,3.82801391678303,0.732780747214898,6.39641731222362,0,0,0.332423363800313,0.225595660617181,0,0,0,0,0,0,2.40300221437699,0,2.98578579323551,9.64187453086397,3.05515072466813,0,0,0,0.539209063845416,0,0.468528891450678,0.182454789215666,2.54364004611717,0,0.394584402849391,7.25944296291983,0.30607276163049,0,1.05226393590145,1.03688191397247,0.664653872707185,0.661983911750998,0.627865836814451,1.19472429772959,0,0,0.347119476670262,0.685946781900644,0,1.22308667769421,0,0.483781656445426,0.511625219603299,0.164230914106418,0.387956065953678,0,3.38971111170799,0,0.19871461170299,0.126621591911757,3.51992488922645,0.881747022766871,8.32466679483475,0.39961921916426,8.21315377778404,0.114536596165916,0,0,1.49103042678519,1.88555227693436,0,0,0,0,0,0.136905378891993,0,0.429765441419957,0,0.558564802544508,0,0.717873024576814,1.39775300349294,0.858452096273142,0.223171457441873,0.0671834724867263,0,0,1.3393140992228,1.81314888438566,1.3480708770837,0.0984274815147488,0,0,0.136203406111576,3.05430982083536,2.33817042215297,3.32352270423348,0.674921674654501,0,0.364497339948148,0,0.551639951094387,1.83591058472493,0,0,2.30298236783334,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,1.02652102730598,3.52407511158336,1.17466153824464,2.82967749179399,2.07119527673598,0,0,0.121792598380896,2.55336503108073,0,0.2506898940227,0,0,2.19875734750328,0,0,0.1251909307065,0.573409195690071,0,0.124192805882767,0,0.74988244777264,2.12308764558307,0,2.58792401667989,0.468334905806882,2.75349954360568,0.298509605773748,0,0,0,0,0,0,0.302461847526478,0.15543720058278,0,0,0,0.310525913752519,0,0,0,0.300515217994437,0,0,0,0.107410557042488,0,0,0.400027764663154,0,0,0,0,0.643324774124777,0,0,1.85217979459067,0.489473409012935,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0.265729680626726,0.654261577023377,0,0.737318726261158,4.22624246717254,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0.655257829152084,0,0,0,0,0,0,0,0.352675943690684,0,0.192687675289379,0,0,0,0.252071696221718,0,0,2.85538840518309,0.392590874004102,2.71330363699803,0.733714394086716,0.808679663052368,0,0,0,0.0752103283492573,0,0.781514011233092,3.40478702825849,0.327543835020193,2.21784129325568,0,0,0,0.19024743058172,1.64092442705466,2.74128883428591,0.496211178389294,0,2.04419884223352,7.49982570229601,16.1416186665036,2.42786241694653,2.04895972216168,1.06442844195167,0,0.171488009437418,0.0679697329768317,0,0.354581522651905,0.111231401892069,1.88383422841234,0,7.28707624615851,0.913158720509496,1.51149313853035,0,2.35872595782966,2.84424501118908,0,0.869291361512897,0,0,0,0,8.17431981758527,0,0,0.423387050190929,2.52017555398455,0,0,0.559277158988962,4.61306097991642,10.7287773984397,0,0.102662806856247,0,0.971421986118279,7.48606283078738,0,0,3.84016678932464,0.219881033490858,1.96251696636676,9.49242144727719,4.15263164957519,0.940634592723046,0,3.77082475362602,0,0,0.4226557275834,0,0,0.0644578879735772,0.299823467774787,2.32120120187355,2.11736923029415,1.12337913364836,9.49437304720472,3.21110498383179,0.286679166302903,0,0.0679914901909147,0,3.7031878836078,0,0,0,0.756998549010474,0.218531143927391,1.64708051314868,3.97756435993729,2.6721740526556,2.38926738790597,1.50424523575425,0.606229585745915,0.803892390468535,0,0,1.70587185520785,1.1903221573187,0.258355639344024,0.0620747142958579,0.224263725161227,0,0,1.52401723527873,0,1.54909721933551,3.44266585884847,0.665320713092027,1.79087190944144,0.640364075266293,0,2.87440646741078,0,0.244482888365733,0.406896178315738,0.665756774185513,0.201273793591026,1.28227396921293 | |||
|short_description=p6@TRAK1 | |||
}} |
Revision as of 18:23, 21 January 2014
Short description: | p6@TRAK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_TRAK1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000341421, ENST00000396175, NM_014965, uc003cla.2_5end |
EntrezGene: | TRAK1 |
HGNC: | 29947 |
UniProt: | Q9UPV9C9JC32 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.85e-11 | 253 |
germ line cell | 1.08e-07 | 7 |
germ cell | 1.08e-07 | 7 |
endodermal cell | 3.34e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 2.50e-11 | 118 |
endoderm-derived structure | 1.28e-09 | 160 |
endoderm | 1.28e-09 | 160 |
presumptive endoderm | 1.28e-09 | 160 |
digestive system | 5.62e-09 | 145 |
digestive tract | 5.62e-09 | 145 |
primitive gut | 5.62e-09 | 145 |
gastrointestinal system | 1.26e-07 | 25 |
intestine | 5.15e-07 | 17 |
gland of diencephalon | 7.67e-07 | 4 |
neuroendocrine gland | 7.67e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.71e-13 | 106 |
cell type cancer | 2.05e-09 | 143 |