FFCP PHASE1:Hg19::chr6:106546871..106546878,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=639 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9346 | |||
|TSSclassifier=strong | |||
|UniProt=Q86WM7 | |||
|association_with_transcript=56bp_to_ENST00000369089,uc003pre.2_5end | |||
|coexpression_cluster_id=C1199 | |||
|description=CAGE_peak_17_at_PRDM1_5end | |||
|id=chr6:106546871..106546878,+ | |||
|ontology_enrichment_celltype=CL:0000838!1.36e-16!52;CL:0000542!3.62e-16!53;CL:0000051!3.62e-16!53;CL:0000080!5.96e-16!6;CL:0000084!2.40e-15!25;CL:0000827!2.40e-15!25;CL:0000791!5.59e-13!18;CL:0000789!5.59e-13!18;CL:0002420!5.59e-13!18;CL:0002419!5.59e-13!18;CL:0000790!5.59e-13!18;CL:0000624!2.28e-11!6;CL:0000623!5.96e-09!3;CL:0000825!5.96e-09!3;CL:0000842!1.26e-08!3;CL:0002087!1.66e-08!119;CL:0000738!9.55e-08!140 | |||
|ontology_enrichment_celltype_v019=CL:0000084;7.74e-16;25!CL:0000623;1.64e-15;3!CL:0000791;3.51e-10;18!CL:0000789;3.51e-10;18!CL:0002419;3.51e-10;18!CL:0000624;1.87e-08;6!CL:0000542;2.10e-07;53!CL:0000815;6.07e-07;2!CL:0000792;6.07e-07;2!CL:0002677;6.07e-07;2!CL:0000771;9.27e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,7.85e-16,25;CL:0000827,7.85e-16,25;CL:0000623,1.14e-15,3;CL:0000825,1.14e-15,3;CL:0000838,7.08e-13,52;CL:0000542,1.29e-12,53;CL:0000051,1.29e-12,53;CL:0000791,3.56e-10,18;CL:0000789,3.56e-10,18;CL:0002420,3.56e-10,18;CL:0002419,3.56e-10,18;CL:0000790,3.56e-10,18;CL:0000624,1.74e-08,6;CL:0000988,2.86e-07,177;CL:0000815,5.41e-07,2;CL:0000792,5.41e-07,2;CL:0002677,5.41e-07,2;CL:0000771,8.52e-07,2;CL:0000738,9.03e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;3.51e-10;18!CL:0000051;2.10e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;8.35e-13;1!DOID:0060061;8.35e-13;1!DOID:8691;8.35e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,8.85e-13,1;DOID:0060061,8.85e-13,1;DOID:8691,8.85e-13,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.11e-07;15!UBERON:0000179;4.11e-07;15!UBERON:0000463;4.11e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.82e-07,15;UBERON:0000179,3.82e-07,15;UBERON:0000463,3.82e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0.767658796194425,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0.320929027076094,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0.590129310341499,0.786021525498329,2.87842098599313,0.334372990781356,0.651844533267181,0.946895611469467,0,0.668462741311041,2.94605907474837,2.87994062958707,4.60366568400527,0.896639238079726,0.260118695119756,0.164437904603676,0,0,0,0,0,0,0,2.06176467289578,1.01207876807801,0.637130828648193,0,0,0,0.255973222308837,2.49861453104692,0,0,0,1.06976078313403,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18218456121156,0.646882724578552,1.54011643535698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.647142602455851,1.06727557803444,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0.519254429183621,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0.659215496907038,0,0,0.276283915531148,0,0,0.246169610922139,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48260564340311,0.741383633679017,1.35748534357092,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.6804229599104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0.197611631897944,0,0,0,1.0027595760908,0,0,0,0,0.244052529803926,0,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.39978572953381,0,0.344429959321631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.375935671919414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18378979906969,0.250707539292375,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0.0636471582781649,0,0.217716747896961,0,0.202056159043763,0.143444410785353,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p17@PRDM1 | |||
}} |
Revision as of 13:12, 22 January 2014
Short description: | p17@PRDM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_PRDM1_5end |
Coexpression cluster: | C1199_CD4_Natural_CD8_Basophils_Peripheral_mycosis_cord |
Association with transcript: | 56bp_to_ENST00000369089, uc003pre.2_5end |
EntrezGene: | PRDM1 |
HGNC: | 9346 |
UniProt: | Q86WM7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 7.85e-16 | 25 |
pro-T cell | 7.85e-16 | 25 |
natural killer cell | 1.14e-15 | 3 |
pro-NK cell | 1.14e-15 | 3 |
lymphoid lineage restricted progenitor cell | 7.08e-13 | 52 |
lymphocyte | 1.29e-12 | 53 |
common lymphoid progenitor | 1.29e-12 | 53 |
mature alpha-beta T cell | 3.56e-10 | 18 |
alpha-beta T cell | 3.56e-10 | 18 |
immature T cell | 3.56e-10 | 18 |
mature T cell | 3.56e-10 | 18 |
immature alpha-beta T cell | 3.56e-10 | 18 |
CD4-positive, alpha-beta T cell | 1.74e-08 | 6 |
hematopoietic cell | 2.86e-07 | 177 |
regulatory T cell | 5.41e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.41e-07 | 2 |
naive regulatory T cell | 5.41e-07 | 2 |
eosinophil | 8.52e-07 | 2 |
leukocyte | 9.03e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
blood | 3.82e-07 | 15 |
haemolymphatic fluid | 3.82e-07 | 15 |
organism substance | 3.82e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 8.85e-13 | 1 |
cutaneous T cell lymphoma | 8.85e-13 | 1 |
mycosis fungoides | 8.85e-13 | 1 |