Personal tools

CL:0002625: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002625
|alt_id=
|name=seminiferous tubule epithelial cell
|namespace=cell
|def="A cell of the seminiferous tubule epithelium." [GOC:tfm]
|xref=
|is_a=CL:0000077
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-15T11:59:23Z
|def="A cell of the seminiferous tubule epithelium." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002625
|is_a=CL:0000068 ;;CL:0000077
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0004813
|name=seminiferous tubule epithelial cell
|namespace=cell
|obo_creation_date=2011-03-15T11:59:23Z
|part_of=UBERON:0001343;;UBERON:0004813
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:30, 12 September 2014

Name:seminiferous tubule epithelial cell
Namespace:cell
Definition:"A cell of the seminiferous tubule epithelium." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-15T11:59:23Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000068(duct epithelial cell),CL:0000077(mesothelial cell)
part_of:UBERON:0001343(seminiferous tubule of testis),UBERON:0004813(seminiferous tubule epithelium)



Children


is a:CL:0000216 (Sertoli cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002625 (seminiferous tubule epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_7e759df653f21cf5931b340830acd369p26@BDNF
5.42e-195FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_7e759df653f21cf5931b340830acd369p26@BDNF
9.37e-99FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_61979be5003f3a44b1fbb50a48ef9d23p43@CDC42BPA
9.37e-99FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_61979be5003f3a44b1fbb50a48ef9d23p9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_61979be5003f3a44b1fbb50a48ef9d23p9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_61979be5003f3a44b1fbb50a48ef9d23p43@CDC42BPA
2.55e-98FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_5e35336ec2bcd2c38ed9e846853f13cbp@chr13:53030077..53030083, -
2.55e-98FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_5e35336ec2bcd2c38ed9e846853f13cbp@chr8:47529304..47529311, -
2.55e-98FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_5e35336ec2bcd2c38ed9e846853f13cbp@chr8:47529304..47529311, -
2.55e-98FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr19:54600897..54600899, +
2.55e-98FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr8:69832864..69832865, +
2.55e-98FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr8:69832864..69832865, +
2.55e-98FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr7:18206831..18206833, +
2.55e-98FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_5e35336ec2bcd2c38ed9e846853f13cbp@chr19:40320572..40320586, -
2.55e-98FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_5e35336ec2bcd2c38ed9e846853f13cbp@chr19:40320572..40320586, -
2.55e-98FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr2:9519086..9519101, +
2.55e-98FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_5e35336ec2bcd2c38ed9e846853f13cbp@chr13:53030077..53030083, -
2.55e-98FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr3:193356854..193356864, +
2.55e-98FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr3:170430340..170430344, +
2.55e-98FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr7:18206831..18206833, +
2.55e-98FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr3:193356854..193356864, +
2.55e-98FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr3:170430340..170430344, +
2.55e-98FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_5e35336ec2bcd2c38ed9e846853f13cbp7@C7orf63
2.55e-98FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_5e35336ec2bcd2c38ed9e846853f13cbp@chr2:9519086..9519101, +
2.55e-98FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_5e35336ec2bcd2c38ed9e846853f13cbp7@C7orf63
1.23e-66FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_9cbb88826ea56e9192bea92c6749de6cp@chr2:19551668..19551679, -
1.23e-66FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_9cbb88826ea56e9192bea92c6749de6cp@chr2:19551668..19551679, -
2.39e-66FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_28574594d2f2813a9fb8aaeeaf491518p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_28574594d2f2813a9fb8aaeeaf491518p22@TMEM130
2.39e-66FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_28574594d2f2813a9fb8aaeeaf491518p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_28574594d2f2813a9fb8aaeeaf491518p22@TMEM130
2.39e-66FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_28574594d2f2813a9fb8aaeeaf491518p@chr1:197889533..197889548, +
2.39e-66FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_28574594d2f2813a9fb8aaeeaf491518p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_28574594d2f2813a9fb8aaeeaf491518p@chr1:197889533..197889548, +
2.39e-66FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_28574594d2f2813a9fb8aaeeaf491518p21@EPS8
2.39e-66FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_28574594d2f2813a9fb8aaeeaf491518p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_28574594d2f2813a9fb8aaeeaf491518p21@EPS8
4.66e-66FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_8549e3b66b5f4a4199b4700e34b76099p@chr5:90830481..90830492, +
4.66e-66FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_8549e3b66b5f4a4199b4700e34b76099p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_8549e3b66b5f4a4199b4700e34b76099p@chr3:170916991..170916995, -
4.66e-66FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_8549e3b66b5f4a4199b4700e34b76099p@chr3:170916991..170916995, -
4.66e-66FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_8549e3b66b5f4a4199b4700e34b76099p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_8549e3b66b5f4a4199b4700e34b76099p4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_8549e3b66b5f4a4199b4700e34b76099p38@PTK2
4.66e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_8549e3b66b5f4a4199b4700e34b76099p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_8549e3b66b5f4a4199b4700e34b76099p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_8549e3b66b5f4a4199b4700e34b76099p38@PTK2
4.66e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_8549e3b66b5f4a4199b4700e34b76099p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_8549e3b66b5f4a4199b4700e34b76099p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_8549e3b66b5f4a4199b4700e34b76099p4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_8549e3b66b5f4a4199b4700e34b76099p@chr5:90830481..90830492, +
1.46e-50FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_1afa7bd3853d43a79dc740fc365e74efp8@TCF21
1.46e-50FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_1afa7bd3853d43a79dc740fc365e74efp8@TCF21
1.46e-50FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_1afa7bd3853d43a79dc740fc365e74efp@chr11:114173606..114173612, +
1.46e-50FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_1afa7bd3853d43a79dc740fc365e74efp@chr2:177009137..177009140, +
1.46e-50FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_1afa7bd3853d43a79dc740fc365e74efp@chr11:114173606..114173612, +
1.46e-50FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_1afa7bd3853d43a79dc740fc365e74efp@chr2:177009137..177009140, +
2.42e-50FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_581e80a2eba07275caaf4a53b55328f1p6@C2orf63
2.42e-50FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_581e80a2eba07275caaf4a53b55328f1p31@ZNF331
2.42e-50FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_581e80a2eba07275caaf4a53b55328f1p11@USP25
2.42e-50FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_581e80a2eba07275caaf4a53b55328f1p6@C2orf63
2.42e-50FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_581e80a2eba07275caaf4a53b55328f1p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_581e80a2eba07275caaf4a53b55328f1p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_581e80a2eba07275caaf4a53b55328f1p32@CREB3L2
2.42e-50FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_581e80a2eba07275caaf4a53b55328f1p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_581e80a2eba07275caaf4a53b55328f1p31@ZNF331
2.42e-50FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_581e80a2eba07275caaf4a53b55328f1p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_581e80a2eba07275caaf4a53b55328f1p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_581e80a2eba07275caaf4a53b55328f1p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_581e80a2eba07275caaf4a53b55328f1p11@USP25
2.42e-50FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_581e80a2eba07275caaf4a53b55328f1p32@CREB3L2
3.99e-50FFCP PHASE1:Hg19::chr11:829412..829430,+#_0a809deb07e4bad34171e8bab09ff1cep11@EFCAB4A
3.99e-50FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_0a809deb07e4bad34171e8bab09ff1cep@chr15:39420650..39420666, +
3.99e-50FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_0a809deb07e4bad34171e8bab09ff1cep10@ESR2
3.99e-50FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_0a809deb07e4bad34171e8bab09ff1cep@chr4:103969123..103969127, -
3.99e-50FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_0a809deb07e4bad34171e8bab09ff1cep@chr4:103969123..103969127, -
3.99e-50FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_0a809deb07e4bad34171e8bab09ff1cep@chr12:5198350..5198359, +
3.99e-50FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_0a809deb07e4bad34171e8bab09ff1cep@chr12:5198350..5198359, +
3.99e-50FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_0a809deb07e4bad34171e8bab09ff1cep10@ESR2
3.99e-50FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_0a809deb07e4bad34171e8bab09ff1cep@chr15:39420650..39420666, +
3.99e-50FFCP PHASE2:Hg19::chr11:829412..829430,+#_0a809deb07e4bad34171e8bab09ff1cep11@EFCAB4A
6.58e-50FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_bdd864286a792d39ce8123f734123224p3@CACNA1H
6.58e-50FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_bdd864286a792d39ce8123f734123224p51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_bdd864286a792d39ce8123f734123224p1@LOC645638
6.58e-50FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_bdd864286a792d39ce8123f734123224p51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_bdd864286a792d39ce8123f734123224p3@CACNA1H
6.58e-50FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_bdd864286a792d39ce8123f734123224p13@SOS2
6.58e-50FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_bdd864286a792d39ce8123f734123224p1@LOC645638
6.58e-50FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_bdd864286a792d39ce8123f734123224p13@SOS2
6.62e-41FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_2da1c9aaf17abe809b574175f1d67b08p@chr3:194214959..194214968, -
6.62e-41FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_2da1c9aaf17abe809b574175f1d67b08p@chr3:194214959..194214968, -
9.91e-41FFCP PHASE1:Hg19::chr13:49549473..49549480,+#_4903c84de54083760717d12debdf262ep@chr13:49549473..49549480, +
9.91e-41FFCP PHASE1:Hg19::chr15:34522001..34522013,+#_4903c84de54083760717d12debdf262ep@chr15:34522001..34522013, +
9.91e-41FFCP PHASE2:Hg19::chr2:102604493..102604499,+#_4903c84de54083760717d12debdf262ep@chr2:102604493..102604499, +
9.91e-41FFCP PHASE1:Hg19::chr11:110581726..110581728,-#_4903c84de54083760717d12debdf262ep@chr11:110581726..110581728, -
9.91e-41FFCP PHASE2:Hg19::chr11:77282391..77282402,+#_4903c84de54083760717d12debdf262ep@chr11:77282391..77282402, +
9.91e-41FFCP PHASE1:Hg19::chr2:102604493..102604499,+#_4903c84de54083760717d12debdf262ep@chr2:102604493..102604499, +
9.91e-41FFCP PHASE1:Hg19::chr11:77282391..77282402,+#_4903c84de54083760717d12debdf262ep@chr11:77282391..77282402, +
9.91e-41FFCP PHASE2:Hg19::chr11:94822746..94822757,+#_4903c84de54083760717d12debdf262ep8@ENDOD1

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002625&oldid=3272229"