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{{DOID
{{DOID
|id=DOID:5662
|alt_id=
|name=pleomorphic carcinoma
|namespace=disease_ontology
|def="A carcinoma that is consisting of spindle or giant cells (or both) combined with squamous cell carcinoma, adenocarcinoma, or large-cell carcinoma." [url:http://ats.ctsnetjournals.org/cgi/content/full/78/5/1742]
|xref=NCI:C4094;;SNOMEDCT_2010_1_31:16741004;;UMLS_CUI:C0334233
|is_a=DOID:305
|synonym="Pleomorphic carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:16741004]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A carcinoma that is consisting of spindle or giant cells (or both) combined with squamous cell carcinoma, adenocarcinoma, or large-cell carcinoma." [url:http://ats.ctsnetjournals.org/cgi/content/full/78/5/1742]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:5662
|is_a=DOID:305
|is_obsolete=
|located_in=
|located_in=
|name=pleomorphic carcinoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="Pleomorphic carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:16741004]
|union_of=
|xref=NCI:C4094;;SNOMEDCT_2010_1_31:16741004;;UMLS_CUI:C0334233
}}
}}

Revision as of 10:36, 12 September 2014

Name:pleomorphic carcinoma
Namespace:disease_ontology
Definition:"A carcinoma that is consisting of spindle or giant cells (or both) combined with squamous cell carcinoma, adenocarcinoma, or large-cell carcinoma." [url:http://ats.ctsnetjournals.org/cgi/content/full/78/5/1742]
Xrefs:
links:

NCI:C4094
SNOMEDCT_2010_1_31:16741004

UMLS_CUI:C0334233
Synonyms: "Pleomorphic carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:16741004]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:305(carcinoma)



Children


is a:FF:10706-109H4 (pleomorphic hepatocellular carcinoma cell line:SNU-387),FF:10746-110C8 ()

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:5662 (pleomorphic carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr6:55911444..55911446,-#_45bec2167057bc6b488cb53b856e686bp@chr6:55911444..55911446, -
5.42e-195FFCP PHASE2:Hg19::chr1:224716919..224716927,+#_45bec2167057bc6b488cb53b856e686bp31@CNIH3
5.42e-195FFCP PHASE1:Hg19::chr2:147744107..147744108,-#_45bec2167057bc6b488cb53b856e686bp@chr2:147744107..147744108, -
5.42e-195FFCP PHASE2:Hg19::chr11:66800552..66800553,+#_45bec2167057bc6b488cb53b856e686bp@chr11:66800552..66800553, +
5.42e-195FFCP PHASE2:Hg19::chr1:224716955..224716961,+#_45bec2167057bc6b488cb53b856e686bp30@CNIH3
5.42e-195FFCP PHASE1:Hg19::chr6:55911444..55911446,-#_45bec2167057bc6b488cb53b856e686bp@chr6:55911444..55911446, -
5.42e-195FFCP PHASE1:Hg19::chr1:224716919..224716927,+#_45bec2167057bc6b488cb53b856e686bp31@CNIH3
5.42e-195FFCP PHASE1:Hg19::chr11:66800552..66800553,+#_45bec2167057bc6b488cb53b856e686bp@chr11:66800552..66800553, +
5.42e-195FFCP PHASE2:Hg19::chr1:224716964..224716967,+#_45bec2167057bc6b488cb53b856e686bp33@CNIH3
5.42e-195FFCP PHASE1:Hg19::chr1:224716955..224716961,+#_45bec2167057bc6b488cb53b856e686bp30@CNIH3
5.42e-195FFCP PHASE2:Hg19::chr2:147702122..147702148,-#_45bec2167057bc6b488cb53b856e686bp@chr2:147702122..147702148, -
5.42e-195FFCP PHASE2:Hg19::chr6:56803369..56803378,-#_45bec2167057bc6b488cb53b856e686bp@chr6:56803369..56803378, -
5.42e-195FFCP PHASE1:Hg19::chr1:224716964..224716967,+#_45bec2167057bc6b488cb53b856e686bp33@CNIH3
5.42e-195FFCP PHASE2:Hg19::chr2:147744107..147744108,-#_45bec2167057bc6b488cb53b856e686bp@chr2:147744107..147744108, -
5.42e-195FFCP PHASE1:Hg19::chr2:147702122..147702148,-#_45bec2167057bc6b488cb53b856e686bp@chr2:147702122..147702148, -
5.42e-195FFCP PHASE1:Hg19::chr6:56803369..56803378,-#_45bec2167057bc6b488cb53b856e686bp@chr6:56803369..56803378, -
9.37e-99FFCP PHASE1:Hg19::chr3:106393655..106393659,+#_139c49ab863d3c4e1a191d2c246b8538p@chr3:106393655..106393659, +
9.37e-99FFCP PHASE2:Hg19::chr9:26797561..26797563,+#_139c49ab863d3c4e1a191d2c246b8538p@chr9:26797561..26797563, +
9.37e-99FFCP PHASE2:Hg19::chrX:31582142..31582159,+#_139c49ab863d3c4e1a191d2c246b8538p@chrX:31582142..31582159, +
9.37e-99FFCP PHASE1:Hg19::chrX:31582142..31582159,+#_139c49ab863d3c4e1a191d2c246b8538p@chrX:31582142..31582159, +
9.37e-99FFCP PHASE1:Hg19::chr9:26797561..26797563,+#_139c49ab863d3c4e1a191d2c246b8538p@chr9:26797561..26797563, +
9.37e-99FFCP PHASE2:Hg19::chr3:106393655..106393659,+#_139c49ab863d3c4e1a191d2c246b8538p@chr3:106393655..106393659, +
2.55e-98FFCP PHASE2:Hg19::chr4:128083368..128083415,-#_7d71738931c21a27b4e3b454cce4e338p@chr4:128083368..128083415, -
2.55e-98FFCP PHASE2:Hg19::chr5:2430820..2430834,-#_7d71738931c21a27b4e3b454cce4e338p@chr5:2430820..2430834, -
2.55e-98FFCP PHASE2:Hg19::chr8:29537193..29537198,-#_7d71738931c21a27b4e3b454cce4e338p@chr8:29537193..29537198, -
2.55e-98FFCP PHASE1:Hg19::chr4:128083368..128083415,-#_7d71738931c21a27b4e3b454cce4e338p@chr4:128083368..128083415, -
2.55e-98FFCP PHASE1:Hg19::chr5:2430820..2430834,-#_7d71738931c21a27b4e3b454cce4e338p@chr5:2430820..2430834, -
2.55e-98FFCP PHASE2:Hg19::chr13:114540830..114540839,+#_7d71738931c21a27b4e3b454cce4e338p@chr13:114540830..114540839, +
2.55e-98FFCP PHASE1:Hg19::chr8:29537193..29537198,-#_7d71738931c21a27b4e3b454cce4e338p@chr8:29537193..29537198, -
2.55e-98FFCP PHASE1:Hg19::chr13:114540830..114540839,+#_7d71738931c21a27b4e3b454cce4e338p@chr13:114540830..114540839, +
1.23e-66FFCP PHASE1:Hg19::chr6:56803379..56803390,-#_e00d3963a09d8226307fa59716af8d9ep@chr6:56803379..56803390, -
1.23e-66FFCP PHASE2:Hg19::chr2:231825896..231825916,-#_e00d3963a09d8226307fa59716af8d9ep5@GPR55
1.23e-66FFCP PHASE1:Hg19::chr2:231825896..231825916,-#_e00d3963a09d8226307fa59716af8d9ep5@GPR55
1.23e-66FFCP PHASE2:Hg19::chr6:56803379..56803390,-#_e00d3963a09d8226307fa59716af8d9ep@chr6:56803379..56803390, -
2.39e-66FFCP PHASE1:Hg19::chr13:107028955..107028963,+#_89d41fbd7a2fa73e3ef08e8ba185603fp6@LINC00460
2.39e-66FFCP PHASE2:Hg19::chr7:48284886..48284925,+#_89d41fbd7a2fa73e3ef08e8ba185603fp@chr7:48284886..48284925, +
2.39e-66FFCP PHASE1:Hg19::chr7:48284886..48284925,+#_89d41fbd7a2fa73e3ef08e8ba185603fp@chr7:48284886..48284925, +
2.39e-66FFCP PHASE2:Hg19::chr2:234545393..234545403,+#_89d41fbd7a2fa73e3ef08e8ba185603fp3@UGT1A10
2.39e-66FFCP PHASE2:Hg19::chr13:107028955..107028963,+#_89d41fbd7a2fa73e3ef08e8ba185603fp6@LINC00460
2.39e-66FFCP PHASE1:Hg19::chr2:234545393..234545403,+#_89d41fbd7a2fa73e3ef08e8ba185603fp3@UGT1A10
4.66e-66FFCP PHASE1:Hg19::chr6:124669719..124669754,+#_3c1c9019de609f271f31392f4ff905a8p@chr6:124669719..124669754, +
4.66e-66FFCP PHASE2:Hg19::chr6:124669719..124669754,+#_3c1c9019de609f271f31392f4ff905a8p@chr6:124669719..124669754, +
3.99e-50FFCP PHASE1:Hg19::chr1:248080919..248080929,+#_28ac947c1fedfa6697a3bd46ccb0f517p@chr1:248080919..248080929, +
3.99e-50FFCP PHASE2:Hg19::chr1:248080919..248080929,+#_28ac947c1fedfa6697a3bd46ccb0f517p@chr1:248080919..248080929, +
6.58e-50FFCP PHASE2:Hg19::chr8:83603164..83603178,-#_d3135718b0c1af3956980c4f543b1660p@chr8:83603164..83603178, -
6.58e-50FFCP PHASE1:Hg19::chr2:29353400..29353413,+#_d3135718b0c1af3956980c4f543b1660p28@CLIP4
6.58e-50FFCP PHASE1:Hg19::chr8:83603164..83603178,-#_d3135718b0c1af3956980c4f543b1660p@chr8:83603164..83603178, -
6.58e-50FFCP PHASE2:Hg19::chr10:59633852..59633857,-#_d3135718b0c1af3956980c4f543b1660p@chr10:59633852..59633857, -
6.58e-50FFCP PHASE2:Hg19::chr2:29353400..29353413,+#_d3135718b0c1af3956980c4f543b1660p28@CLIP4
6.58e-50FFCP PHASE1:Hg19::chr10:59633852..59633857,-#_d3135718b0c1af3956980c4f543b1660p@chr10:59633852..59633857, -
9.91e-41FFCP PHASE2:Hg19::chr5:83381628..83381664,-#_44286236fad916358861b9117291c67fp@chr5:83381628..83381664, -
9.91e-41FFCP PHASE1:Hg19::chr5:83381628..83381664,-#_44286236fad916358861b9117291c67fp@chr5:83381628..83381664, -
1.48e-40FFCP PHASE1:Hg19::chr9:118595109..118595124,+#_e7361d0d3d3205ca79244647c8d99714p@chr9:118595109..118595124, +
1.48e-40FFCP PHASE2:Hg19::chr4:166513830..166513834,+#_e7361d0d3d3205ca79244647c8d99714p@chr4:166513830..166513834, +
1.48e-40FFCP PHASE2:Hg19::chr9:118595109..118595124,+#_e7361d0d3d3205ca79244647c8d99714p@chr9:118595109..118595124, +
1.48e-40FFCP PHASE1:Hg19::chr4:166513830..166513834,+#_e7361d0d3d3205ca79244647c8d99714p@chr4:166513830..166513834, +
2.21e-40FFCP PHASE1:Hg19::chrX:73040521..73040536,-#_33182a5767aac677125c0119f7932b4ep55@XIST
2.21e-40FFCP PHASE2:Hg19::chr7:81093571..81093579,-#_33182a5767aac677125c0119f7932b4ep@chr7:81093571..81093579, -
2.21e-40FFCP PHASE1:Hg19::chr7:81093571..81093579,-#_33182a5767aac677125c0119f7932b4ep@chr7:81093571..81093579, -
2.21e-40FFCP PHASE2:Hg19::chrX:73040521..73040536,-#_33182a5767aac677125c0119f7932b4ep55@XIST
3.3e-40FFCP PHASE1:Hg19::chr5:39892121..39892134,+#_f2be54f860f4623f8ce310db3558f13ep@chr5:39892121..39892134, +
3.3e-40FFCP PHASE2:Hg19::chr6:75912602..75912613,-#_f2be54f860f4623f8ce310db3558f13ep25@COL12A1
3.3e-40FFCP PHASE1:Hg19::chr6:75912602..75912613,-#_f2be54f860f4623f8ce310db3558f13ep25@COL12A1
3.3e-40FFCP PHASE2:Hg19::chr5:39892121..39892134,+#_f2be54f860f4623f8ce310db3558f13ep@chr5:39892121..39892134, +
1.84e-34FFCP PHASE1:Hg19::chr4:57931763..57931773,-#_6499391125bff75a2a350a2882bd65e8p3@ENST00000512512
1.84e-34FFCP PHASE2:Hg19::chr3:168808463..168808491,-#_6499391125bff75a2a350a2882bd65e8p@chr3:168808463..168808491, -
1.84e-34FFCP PHASE1:Hg19::chr3:168808463..168808491,-#_6499391125bff75a2a350a2882bd65e8p@chr3:168808463..168808491, -
1.84e-34FFCP PHASE2:Hg19::chr4:57931763..57931773,-#_6499391125bff75a2a350a2882bd65e8p3@ENST00000512512
2.58e-34FFCP PHASE2:Hg19::chr6:44013424..44013453,-#_78b84b8fcdf2b1cd6947bf6740392b68p@chr6:44013424..44013453, -
2.58e-34FFCP PHASE1:Hg19::chr6:44013424..44013453,-#_78b84b8fcdf2b1cd6947bf6740392b68p@chr6:44013424..44013453, -
3.61e-34FFCP PHASE2:Hg19::chr2:234545092..234545095,+#_f253911bcbff988d10ddf14ced43ce2fp2@UGT1A10
3.61e-34FFCP PHASE1:Hg19::chr2:234545092..234545095,+#_f253911bcbff988d10ddf14ced43ce2fp2@UGT1A10
7.06e-34FFCP PHASE1:Hg19::chr18:26941884..26941895,-#_9d14da16fb1acdec6f7772a2b9fcf4e0p@chr18:26941884..26941895, -
7.06e-34FFCP PHASE2:Hg19::chr18:26941884..26941895,-#_9d14da16fb1acdec6f7772a2b9fcf4e0p@chr18:26941884..26941895, -
9.85e-34FFCP PHASE2:Hg19::chr1:248080895..248080906,+#_eb3304e73512cda03411956efdafb0b6p@chr1:248080895..248080906, +
9.85e-34FFCP PHASE1:Hg19::chr1:248080895..248080906,+#_eb3304e73512cda03411956efdafb0b6p@chr1:248080895..248080906, +
7.48e-30FFCP PHASE2:Hg19::chr6:56803460..56803471,-#_5b65fe308fe97d0e586b89dbfc68600fp@chr6:56803460..56803471, -
7.48e-30FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_5b65fe308fe97d0e586b89dbfc68600fp@chr2:12248310..12248334, -
7.48e-30FFCP PHASE1:Hg19::chr6:56803460..56803471,-#_5b65fe308fe97d0e586b89dbfc68600fp@chr6:56803460..56803471, -
7.48e-30FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_5b65fe308fe97d0e586b89dbfc68600fp@chr2:12248310..12248334, -
7.48e-30FFCP PHASE2:Hg19::chr9:101611053..101611084,+#_5b65fe308fe97d0e586b89dbfc68600fp5@GALNT12
7.48e-30FFCP PHASE1:Hg19::chr9:101611053..101611084,+#_5b65fe308fe97d0e586b89dbfc68600fp5@GALNT12
9.99e-30FFCP PHASE1:Hg19::chr11:105524723..105524726,-#_6ffbcf8af0624de65a047b0a70449872p@chr11:105524723..105524726, -
9.99e-30FFCP PHASE1:Hg19::chr10:5075825..5075836,+#_6ffbcf8af0624de65a047b0a70449872p@chr10:5075825..5075836, +
9.99e-30FFCP PHASE2:Hg19::chr11:105524723..105524726,-#_6ffbcf8af0624de65a047b0a70449872p@chr11:105524723..105524726, -
9.99e-30FFCP PHASE2:Hg19::chr10:5075825..5075836,+#_6ffbcf8af0624de65a047b0a70449872p@chr10:5075825..5075836, +
1.33e-29FFCP PHASE2:Hg19::chr10:5075837..5075848,+#_ff5a31db9ef31755eb406cd43c1d5e54p@chr10:5075837..5075848, +
1.33e-29FFCP PHASE1:Hg19::chr2:218088352..218088357,+#_ff5a31db9ef31755eb406cd43c1d5e54p@chr2:218088352..218088357, +
1.33e-29FFCP PHASE1:Hg19::chr10:5075837..5075848,+#_ff5a31db9ef31755eb406cd43c1d5e54p@chr10:5075837..5075848, +
1.33e-29FFCP PHASE2:Hg19::chr2:218088352..218088357,+#_ff5a31db9ef31755eb406cd43c1d5e54p@chr2:218088352..218088357, +
1.78e-29FFCP PHASE2:Hg19::chr13:107029290..107029313,+#_c1ea3d2f0b0f779563818e41982acad2p3@LINC00460
1.78e-29FFCP PHASE2:Hg19::chr9:118024784..118024795,-#_c1ea3d2f0b0f779563818e41982acad2p@chr9:118024784..118024795, -
1.78e-29FFCP PHASE2:Hg19::chr4:33469155..33469168,+#_c1ea3d2f0b0f779563818e41982acad2p@chr4:33469155..33469168, +
1.78e-29FFCP PHASE1:Hg19::chr13:107029290..107029313,+#_c1ea3d2f0b0f779563818e41982acad2p3@LINC00460
1.78e-29FFCP PHASE1:Hg19::chr9:118024784..118024795,-#_c1ea3d2f0b0f779563818e41982acad2p@chr9:118024784..118024795, -
1.78e-29FFCP PHASE1:Hg19::chr4:33469155..33469168,+#_c1ea3d2f0b0f779563818e41982acad2p@chr4:33469155..33469168, +
2.37e-29FFCP PHASE1:Hg19::chr1:8935427..8935438,-#_8ae5a904a28400244cfbefe9af1ee868p28@ENO1
2.37e-29FFCP PHASE2:Hg19::chr1:8935427..8935438,-#_8ae5a904a28400244cfbefe9af1ee868p28@ENO1
3.16e-29FFCP PHASE2:Hg19::chr5:86564593..86564604,+#_c5852aa9da41e39eaec0c8365e1c6f1cp13@RASA1
3.16e-29FFCP PHASE1:Hg19::chr5:86564593..86564604,+#_c5852aa9da41e39eaec0c8365e1c6f1cp13@RASA1

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