Personal tools

UBERON:0001905: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 10: Line 10:
|has_quality=
|has_quality=
|id=UBERON:0001905
|id=UBERON:0001905
|is_a=UBERON:0002757;;UBERON:0003296;;UBERON:0010134
|is_a=UBERON:0002757 ;;UBERON:0003296 ;;UBERON:0010134  
|is_obsolete=
|is_obsolete=
|located_in=
|located_in=
Line 16: Line 16:
|namespace=
|namespace=
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001899
|part_of=UBERON:0015238
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001941;;"spatially_disjoint_from" UBERON:0001942;;UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string;;UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001941;;"spatially_disjoint_from" UBERON:0001942;;UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string;;UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string

Revision as of 11:08, 12 September 2014

Name:pineal body
Definition:"The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [FMA:62033, Wikipedia:Pineal_gland]
Xrefs:
links:

AAO:0010549
ABA:PIN
BM:P
BTO:0001067
EFO:0000865
EHDAA2:0001466
EHDAA:7523
EMAPA:18778
EV:0100131
EV:0100221
FMA:62033
GAID:453
galen:PinealGland
[1]
[2]
MA:0000175
MAT:0000448
MESH:A.06.407.635
ncithesaurus:Pineal_Gland
NIF_GrossAnatomy:birnlex_1184
NIF_GrossAnatomy:nlx_anat_1010009
OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA
SCTID:181126002
TAO:0000019
VHOG:0000051
XAO:0000160

ZFA:0000019
Synonyms: "corpus pineale" EXACT []
"epiphysis" RELATED [ZFA:0000019]
"epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri]
"glandula pinealis" EXACT [FMA:TA]
"glandula pinealis" EXACT [FMA:62033, FMA:TA]
"pineal gland" EXACT [FMA:62033]
"pineal organ" EXACT [ZFA:0000019]
Comments:AO notes: part of midbrain in HOG, but this is inconsistent with ABA.
Alt_id: UBERON:FMA_62033-MA_0000175-XAO_0000160
Subset: organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002757(regional part of epithalamus),UBERON:0003296(gland of diencephalon),UBERON:0010134(secretory circumventricular organ)
part_of:UBERON:0015238(pineal complex)



Children

derives from:FF:0010160 (human pineal gland - adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001905 (pineal body), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr16:18036005..18036011,-#_842633804e145228aa5bd41c0ffb3985p@chr16:18036005..18036011, -
3.29e-195FFCP PHASE1:Hg19::chr12:121088132..121088135,+#_842633804e145228aa5bd41c0ffb3985p15@CABP1
3.29e-195FFCP PHASE1:Hg19::chr11:18039672..18039678,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18039672..18039678, -
3.29e-195FFCP PHASE2:Hg19::chr15:55470964..55470974,-#_842633804e145228aa5bd41c0ffb3985p@chr15:55470964..55470974, -
3.29e-195FFCP PHASE2:Hg19::chr4:20985690..20985695,-#_842633804e145228aa5bd41c0ffb3985p38@KCNIP4
3.29e-195FFCP PHASE1:Hg19::chr1:154540028..154540037,+#_842633804e145228aa5bd41c0ffb3985p4@CHRNB2
3.29e-195FFCP PHASE2:Hg19::chr5:119799576..119799585,+#_842633804e145228aa5bd41c0ffb3985p10@PRR16
3.29e-195FFCP PHASE1:Hg19::chr8:135472861..135472868,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135472861..135472868, -
3.29e-195FFCP PHASE2:Hg19::chr1:99798419..99798422,-#_842633804e145228aa5bd41c0ffb3985p@chr1:99798419..99798422, -
3.29e-195FFCP PHASE1:Hg19::chr6:13009334..13009341,-#_842633804e145228aa5bd41c0ffb3985p@chr6:13009334..13009341, -
3.29e-195FFCP PHASE1:Hg19::chr12:60826120..60826127,+#_842633804e145228aa5bd41c0ffb3985p@chr12:60826120..60826127, +
3.29e-195FFCP PHASE2:Hg19::chr13:52650486..52650491,-#_842633804e145228aa5bd41c0ffb3985p@chr13:52650486..52650491, -
3.29e-195FFCP PHASE2:Hg19::chr9:88661694..88661709,-#_842633804e145228aa5bd41c0ffb3985p@chr9:88661694..88661709, -
3.29e-195FFCP PHASE2:Hg19::chr11:18053180..18053192,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18053180..18053192, -
3.29e-195FFCP PHASE1:Hg19::chr1:204667243..204667248,+#_842633804e145228aa5bd41c0ffb3985p@chr1:204667243..204667248, +
3.29e-195FFCP PHASE1:Hg19::chr13:52650486..52650491,-#_842633804e145228aa5bd41c0ffb3985p@chr13:52650486..52650491, -
3.29e-195FFCP PHASE2:Hg19::chr10:80984180..80984190,-#_842633804e145228aa5bd41c0ffb3985p@chr10:80984180..80984190, -
3.29e-195FFCP PHASE2:Hg19::chr9:37668094..37668097,+#_842633804e145228aa5bd41c0ffb3985p6@FRMPD1
3.29e-195FFCP PHASE1:Hg19::chr16:50898098..50898107,-#_842633804e145228aa5bd41c0ffb3985p@chr16:50898098..50898107, -
3.29e-195FFCP PHASE2:Hg19::chr8:135515957..135515964,+#_842633804e145228aa5bd41c0ffb3985p@chr8:135515957..135515964, +
3.29e-195FFCP PHASE2:Hg19::chr2:216447425..216447432,-#_842633804e145228aa5bd41c0ffb3985p2@ENST00000457625
3.29e-195FFCP PHASE1:Hg19::chr8:116085391..116085419,+#_842633804e145228aa5bd41c0ffb3985p@chr8:116085391..116085419, +
3.29e-195FFCP PHASE2:Hg19::chr14:49512240..49512248,-#_842633804e145228aa5bd41c0ffb3985p@chr14:49512240..49512248, -
3.29e-195FFCP PHASE1:Hg19::chr11:18042584..18042593,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18042584..18042593, -
3.29e-195FFCP PHASE1:Hg19::chr2:17185958..17185998,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17185958..17185998, +
3.29e-195FFCP PHASE2:Hg19::chr8:135499228..135499260,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135499228..135499260, -
3.29e-195FFCP PHASE1:Hg19::chr3:17085717..17085733,-#_842633804e145228aa5bd41c0ffb3985p2@PLCL2-AS1
3.29e-195FFCP PHASE2:Hg19::chr3:101038595..101038604,-#_842633804e145228aa5bd41c0ffb3985p@chr3:101038595..101038604, -
3.29e-195FFCP PHASE1:Hg19::chrX:146290937..146290942,+#_842633804e145228aa5bd41c0ffb3985p@chrX:146290937..146290942, +
3.29e-195FFCP PHASE1:Hg19::chr1:45782001..45782009,+#_842633804e145228aa5bd41c0ffb3985p@chr1:45782001..45782009, +
3.29e-195FFCP PHASE1:Hg19::chr17:6328202..6328224,-#_842633804e145228aa5bd41c0ffb3985p1@BC014398
3.29e-195FFCP PHASE1:Hg19::chr7:9782610..9782613,+#_842633804e145228aa5bd41c0ffb3985p@chr7:9782610..9782613, +
3.29e-195FFCP PHASE1:Hg19::chr11:18041206..18041211,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18041206..18041211, -
3.29e-195FFCP PHASE1:Hg19::chr11:72297712..72297715,-#_842633804e145228aa5bd41c0ffb3985p@chr11:72297712..72297715, -
3.29e-195FFCP PHASE1:Hg19::chr8:135473205..135473218,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473205..135473218, -
3.29e-195FFCP PHASE2:Hg19::chr8:135473876..135473885,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473876..135473885, -
3.29e-195FFCP PHASE1:Hg19::chr7:9186866..9186885,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9186866..9186885, -
3.29e-195FFCP PHASE1:Hg19::chr3:100942645..100942655,-#_842633804e145228aa5bd41c0ffb3985p@chr3:100942645..100942655, -
3.29e-195FFCP PHASE1:Hg19::chr8:135515939..135515941,+#_842633804e145228aa5bd41c0ffb3985p@chr8:135515939..135515941, +
3.29e-195FFCP PHASE2:Hg19::chr6:13009334..13009341,-#_842633804e145228aa5bd41c0ffb3985p@chr6:13009334..13009341, -
3.29e-195FFCP PHASE1:Hg19::chr4:20985967..20985972,-#_842633804e145228aa5bd41c0ffb3985p28@KCNIP4
3.29e-195FFCP PHASE2:Hg19::chr11:18067951..18067954,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18067951..18067954, -
3.29e-195FFCP PHASE2:Hg19::chr16:51808960..51808964,-#_842633804e145228aa5bd41c0ffb3985p@chr16:51808960..51808964, -
3.29e-195FFCP PHASE1:Hg19::chr8:135474173..135474185,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135474173..135474185, -
3.29e-195FFCP PHASE2:Hg19::chr8:135521466..135521470,+#_842633804e145228aa5bd41c0ffb3985p@chr8:135521466..135521470, +
3.29e-195FFCP PHASE2:Hg19::chr14:55282406..55282415,-#_842633804e145228aa5bd41c0ffb3985p@chr14:55282406..55282415, -
3.29e-195FFCP PHASE1:Hg19::chr1:57914395..57914398,+#_842633804e145228aa5bd41c0ffb3985p@chr1:57914395..57914398, +
3.29e-195FFCP PHASE1:Hg19::chr15:55470964..55470974,-#_842633804e145228aa5bd41c0ffb3985p@chr15:55470964..55470974, -
3.29e-195FFCP PHASE2:Hg19::chr2:17185958..17185998,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17185958..17185998, +
3.29e-195FFCP PHASE2:Hg19::chr8:135504337..135504342,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135504337..135504342, -
3.29e-195FFCP PHASE2:Hg19::chr16:18066392..18066397,-#_842633804e145228aa5bd41c0ffb3985p@chr16:18066392..18066397, -
3.29e-195FFCP PHASE2:Hg19::chr3:17085717..17085733,-#_842633804e145228aa5bd41c0ffb3985p2@PLCL2-AS1
3.29e-195FFCP PHASE1:Hg19::chr1:13820103..13820109,+#_842633804e145228aa5bd41c0ffb3985p@chr1:13820103..13820109, +
3.29e-195FFCP PHASE1:Hg19::chr3:54952412..54952416,-#_842633804e145228aa5bd41c0ffb3985p@chr3:54952412..54952416, -
3.29e-195FFCP PHASE2:Hg19::chr11:18041194..18041197,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18041194..18041197, -
3.29e-195FFCP PHASE2:Hg19::chr7:9782610..9782613,+#_842633804e145228aa5bd41c0ffb3985p@chr7:9782610..9782613, +
3.29e-195FFCP PHASE2:Hg19::chr11:72297717..72297725,-#_842633804e145228aa5bd41c0ffb3985p@chr11:72297717..72297725, -
3.29e-195FFCP PHASE2:Hg19::chrX:33146637..33146644,-#_842633804e145228aa5bd41c0ffb3985p35@DMD
3.29e-195FFCP PHASE2:Hg19::chr16:51174216..51174239,-#_842633804e145228aa5bd41c0ffb3985p@chr16:51174216..51174239, -
3.29e-195FFCP PHASE1:Hg19::chr2:17141934..17141935,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17141934..17141935, +
3.29e-195FFCP PHASE1:Hg19::chr1:99860883..99860921,-#_842633804e145228aa5bd41c0ffb3985p@chr1:99860883..99860921, -
3.29e-195FFCP PHASE1:Hg19::chr8:135473472..135473477,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473472..135473477, -
3.29e-195FFCP PHASE1:Hg19::chr7:9202487..9202498,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9202487..9202498, -
3.29e-195FFCP PHASE2:Hg19::chr8:87751931..87751947,-#_842633804e145228aa5bd41c0ffb3985p@chr8:87751931..87751947, -
3.29e-195FFCP PHASE2:Hg19::chr7:9186866..9186885,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9186866..9186885, -
3.29e-195FFCP PHASE2:Hg19::chr3:100942645..100942655,-#_842633804e145228aa5bd41c0ffb3985p@chr3:100942645..100942655, -
3.29e-195FFCP PHASE2:Hg19::chr20:44991864..44991887,-#_842633804e145228aa5bd41c0ffb3985p10@SLC35C2
3.29e-195FFCP PHASE1:Hg19::chr11:18040537..18040547,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18040537..18040547, -
3.29e-195FFCP PHASE2:Hg19::chr15:55470984..55471009,-#_842633804e145228aa5bd41c0ffb3985p@chr15:55470984..55471009, -
3.29e-195FFCP PHASE2:Hg19::chr13:68306577..68306607,+#_842633804e145228aa5bd41c0ffb3985p@chr13:68306577..68306607, +
3.29e-195FFCP PHASE1:Hg19::chr3:139938385..139938390,+#_842633804e145228aa5bd41c0ffb3985p@chr3:139938385..139938390, +
3.29e-195FFCP PHASE2:Hg19::chr4:20985967..20985972,-#_842633804e145228aa5bd41c0ffb3985p28@KCNIP4
3.29e-195FFCP PHASE1:Hg19::chr2:17040158..17040170,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17040158..17040170, +
3.29e-195FFCP PHASE1:Hg19::chr14:49512240..49512248,-#_842633804e145228aa5bd41c0ffb3985p@chr14:49512240..49512248, -
3.29e-195FFCP PHASE2:Hg19::chr17:6328202..6328224,-#_842633804e145228aa5bd41c0ffb3985p1@BC014398
3.29e-195FFCP PHASE1:Hg19::chr7:9178350..9178369,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9178350..9178369, -
3.29e-195FFCP PHASE2:Hg19::chr15:47662877..47662880,-#_842633804e145228aa5bd41c0ffb3985p@chr15:47662877..47662880, -
3.29e-195FFCP PHASE2:Hg19::chr1:99860753..99860764,-#_842633804e145228aa5bd41c0ffb3985p@chr1:99860753..99860764, -
3.29e-195FFCP PHASE1:Hg19::chr8:135504314..135504320,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135504314..135504320, -
3.29e-195FFCP PHASE1:Hg19::chr7:36878535..36878540,+#_842633804e145228aa5bd41c0ffb3985p4@ENST00000439998
3.29e-195FFCP PHASE2:Hg19::chr13:52650530..52650533,-#_842633804e145228aa5bd41c0ffb3985p@chr13:52650530..52650533, -
3.29e-195FFCP PHASE1:Hg19::chr2:108604491..108604499,+#_842633804e145228aa5bd41c0ffb3985p8@SLC5A7
3.29e-195FFCP PHASE2:Hg19::chr12:49621641..49621650,+#_842633804e145228aa5bd41c0ffb3985p22@TUBA1C
3.29e-195FFCP PHASE2:Hg19::chr11:18063669..18063678,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18063669..18063678, -
3.29e-195FFCP PHASE1:Hg19::chr10:18580269..18580290,+#_842633804e145228aa5bd41c0ffb3985p@chr10:18580269..18580290, +
3.29e-195FFCP PHASE1:Hg19::chr13:52650530..52650533,-#_842633804e145228aa5bd41c0ffb3985p@chr13:52650530..52650533, -
3.29e-195FFCP PHASE1:Hg19::chrX:33146501..33146521,-#_842633804e145228aa5bd41c0ffb3985p32@DMD
3.29e-195FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473983..135473986, -
3.29e-195FFCP PHASE2:Hg19::chr9:37692930..37692936,+#_842633804e145228aa5bd41c0ffb3985p@chr9:37692930..37692936, +
3.29e-195FFCP PHASE2:Hg19::chr8:135515989..135515991,+#_842633804e145228aa5bd41c0ffb3985p@chr8:135515989..135515991, +
3.29e-195FFCP PHASE1:Hg19::chr2:4224059..4224062,-#_842633804e145228aa5bd41c0ffb3985p@chr2:4224059..4224062, -
3.29e-195FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_842633804e145228aa5bd41c0ffb3985p@chr8:87751918..87751928, -
3.29e-195FFCP PHASE1:Hg19::chr8:116127086..116127103,+#_842633804e145228aa5bd41c0ffb3985p@chr8:116127086..116127103, +
3.29e-195FFCP PHASE1:Hg19::chr7:120842768..120842790,-#_842633804e145228aa5bd41c0ffb3985p@chr7:120842768..120842790, -
3.29e-195FFCP PHASE1:Hg19::chr16:51808960..51808964,-#_842633804e145228aa5bd41c0ffb3985p@chr16:51808960..51808964, -
3.29e-195FFCP PHASE1:Hg19::chr12:6956383..6956390,+#_842633804e145228aa5bd41c0ffb3985p@chr12:6956383..6956390, +
3.29e-195FFCP PHASE1:Hg19::chr3:107545606..107545631,-#_842633804e145228aa5bd41c0ffb3985p@chr3:107545606..107545631, -
3.29e-195FFCP PHASE2:Hg19::chr3:54952412..54952416,-#_842633804e145228aa5bd41c0ffb3985p@chr3:54952412..54952416, -
3.29e-195FFCP PHASE1:Hg19::chr7:129084265..129084288,-#_842633804e145228aa5bd41c0ffb3985p@chr7:129084265..129084288, -
3.29e-195FFCP PHASE2:Hg19::chr8:99033409..99033415,+#_842633804e145228aa5bd41c0ffb3985p16@MATN2










Property "Property value" (as page type) with input value "UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001905&oldid=3274002"