Personal tools

UBERON:0002105: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002105
|alt_id=UBERON:FMA_7192-MA_0002443
|name=vestibulo-auditory system
|namespace=
|def="A sensory system for the sense of hearing[WP]." [Wikipedia:Auditory_system]
|xref=AAO:0000631;;FMA:7192;;FMA:78500;;http://upload.wikimedia.org/wikipedia/commons/d/d2/Anatomy_of_the_Human_Ear.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/HumanEar.jpg/200px-HumanEar.jpg;;MA:0002443;;ncithesaurus:Auditory_System;;NIF_GrossAnatomy:nlx_anat_090817;;OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA;;TAO:0001138;;XAO:0003195;;ZFA:0001138
|is_a=UBERON:0001032
|synonym="auditory organ system" EXACT [];;"auditory system" RELATED [];;"auditory/vestibular system" RELATED [];;"vestibuloauditory system" EXACT [];;"vestibuloauditory system" RELATED []
|comment=Auditory system is general anatomical term in FMA
|comment=Auditory system is general anatomical term in FMA
|alt_id=UBERON:FMA_7192-MA_0002443
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A sensory system for the sense of hearing[WP]." [Wikipedia:Auditory_system]
|subset=functional_classification;;uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002105
|is_a=UBERON:0001032
|is_obsolete=
|located_in=
|located_in=
|name=vestibulo-auditory system
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The sensory system used for balance and hearing.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The sensory system used for balance and hearing.[AAO]" xsd:string
|is_obsolete=
|subset=functional_classification;;uberon_slim;;vertebrate_core
|preceded_by=
|synonym="auditory organ system" EXACT [];;"auditory system" RELATED [];;"auditory/vestibular system" RELATED [];;"vestibuloauditory system" EXACT [];;"vestibuloauditory system" RELATED []
|union_of=
|xref=AAO:0000631;;FMA:7192;;FMA:78500;;http://upload.wikimedia.org/wikipedia/commons/d/d2/Anatomy_of_the_Human_Ear.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/HumanEar.jpg/200px-HumanEar.jpg;;MA:0002443;;ncithesaurus:Auditory_System;;NIF_GrossAnatomy:nlx_anat_090817;;OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA;;TAO:0001138;;XAO:0003195;;ZFA:0001138
}}
}}

Revision as of 11:11, 12 September 2014

Name:vestibulo-auditory system
Definition:"A sensory system for the sense of hearing[WP]." [Wikipedia:Auditory_system]
Xrefs:
links:

AAO:0000631
FMA:7192
FMA:78500
[1]
[2]
MA:0002443
ncithesaurus:Auditory_System
NIF_GrossAnatomy:nlx_anat_090817
OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA
TAO:0001138
XAO:0003195

ZFA:0001138
Synonyms: "auditory organ system" EXACT []
"auditory system" RELATED []
"auditory/vestibular system" RELATED []
"vestibuloauditory system" EXACT []
"vestibuloauditory system" RELATED []
Comments:Auditory system is general anatomical term in FMA
Alt_id: UBERON:FMA_7192-MA_0002443
Subset: functional_classification
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001032(sensory system)



Children

part of:UBERON:0001690 (ear),UBERON:0002827 (vestibulocochlear ganglion),UBERON:0004681 (vestibular system),UBERON:0016490 (auditory system)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 11959-126C6 (Neurons - spiral ganglion, pool1)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002105 (vestibulo-auditory system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_c61890a629f48235895cf0426ce3701cp7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_c61890a629f48235895cf0426ce3701cp@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_c61890a629f48235895cf0426ce3701cp1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_c61890a629f48235895cf0426ce3701cp@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_c61890a629f48235895cf0426ce3701cp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_c61890a629f48235895cf0426ce3701cp4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_c61890a629f48235895cf0426ce3701cp@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_c61890a629f48235895cf0426ce3701cp1@Dytn
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_c61890a629f48235895cf0426ce3701cp@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_c61890a629f48235895cf0426ce3701cp2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_c61890a629f48235895cf0426ce3701cp@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_c61890a629f48235895cf0426ce3701cp@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_c61890a629f48235895cf0426ce3701cp7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_c61890a629f48235895cf0426ce3701cp@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_c61890a629f48235895cf0426ce3701cp5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_c61890a629f48235895cf0426ce3701cp1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_c61890a629f48235895cf0426ce3701cp@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_c61890a629f48235895cf0426ce3701cp4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_c61890a629f48235895cf0426ce3701cp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_c61890a629f48235895cf0426ce3701cp@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_c61890a629f48235895cf0426ce3701cp1@Strc
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_c61890a629f48235895cf0426ce3701cp2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_c61890a629f48235895cf0426ce3701cp@chrX:154140800..154140810, +
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_c61890a629f48235895cf0426ce3701cp10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_c61890a629f48235895cf0426ce3701cp@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_c61890a629f48235895cf0426ce3701cp4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_c61890a629f48235895cf0426ce3701cp@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_c61890a629f48235895cf0426ce3701cp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_c61890a629f48235895cf0426ce3701cp1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_c61890a629f48235895cf0426ce3701cp@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_c61890a629f48235895cf0426ce3701cp@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_c61890a629f48235895cf0426ce3701cp@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_c61890a629f48235895cf0426ce3701cp@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_c61890a629f48235895cf0426ce3701cp4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_c61890a629f48235895cf0426ce3701cp@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_c61890a629f48235895cf0426ce3701cp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_c61890a629f48235895cf0426ce3701cp4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_c61890a629f48235895cf0426ce3701cp21@Espn
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_c61890a629f48235895cf0426ce3701cp2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_c61890a629f48235895cf0426ce3701cp@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_c61890a629f48235895cf0426ce3701cp@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_c61890a629f48235895cf0426ce3701cp5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_c61890a629f48235895cf0426ce3701cp@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_c61890a629f48235895cf0426ce3701cp@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_c61890a629f48235895cf0426ce3701cp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_c61890a629f48235895cf0426ce3701cp@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_c61890a629f48235895cf0426ce3701cp@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_c61890a629f48235895cf0426ce3701cp@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_c61890a629f48235895cf0426ce3701cp@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_c61890a629f48235895cf0426ce3701cp@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_c61890a629f48235895cf0426ce3701cp@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_c61890a629f48235895cf0426ce3701cp11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_c61890a629f48235895cf0426ce3701cp@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_c61890a629f48235895cf0426ce3701cp@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_c61890a629f48235895cf0426ce3701cp@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_c61890a629f48235895cf0426ce3701cp1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_c61890a629f48235895cf0426ce3701cp@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_c61890a629f48235895cf0426ce3701cp4@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_c61890a629f48235895cf0426ce3701cp@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_c61890a629f48235895cf0426ce3701cp@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_c61890a629f48235895cf0426ce3701cp@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_c61890a629f48235895cf0426ce3701cp1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_c61890a629f48235895cf0426ce3701cp1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_c61890a629f48235895cf0426ce3701cp@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_c61890a629f48235895cf0426ce3701cp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_c61890a629f48235895cf0426ce3701cp1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_c61890a629f48235895cf0426ce3701cp1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_c61890a629f48235895cf0426ce3701cp@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_c61890a629f48235895cf0426ce3701cp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_c61890a629f48235895cf0426ce3701cp3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_c61890a629f48235895cf0426ce3701cp5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_c61890a629f48235895cf0426ce3701cp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_c61890a629f48235895cf0426ce3701cp10@Otof
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_c61890a629f48235895cf0426ce3701cp21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_c61890a629f48235895cf0426ce3701cp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_c61890a629f48235895cf0426ce3701cp2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_c61890a629f48235895cf0426ce3701cp@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_c61890a629f48235895cf0426ce3701cp1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_c61890a629f48235895cf0426ce3701cp1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_c61890a629f48235895cf0426ce3701cp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_c61890a629f48235895cf0426ce3701cp@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_c61890a629f48235895cf0426ce3701cp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_c61890a629f48235895cf0426ce3701cp2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_c61890a629f48235895cf0426ce3701cp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_c61890a629f48235895cf0426ce3701cp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_c61890a629f48235895cf0426ce3701cp@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_c61890a629f48235895cf0426ce3701cp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_c61890a629f48235895cf0426ce3701cp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_c61890a629f48235895cf0426ce3701cp@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_c61890a629f48235895cf0426ce3701cp@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_c61890a629f48235895cf0426ce3701cp10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_c61890a629f48235895cf0426ce3701cp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_c61890a629f48235895cf0426ce3701cp@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_c61890a629f48235895cf0426ce3701cp@chr3:81012915..81012923, +
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_c61890a629f48235895cf0426ce3701cp@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_c61890a629f48235895cf0426ce3701cp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_c61890a629f48235895cf0426ce3701cp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_c61890a629f48235895cf0426ce3701cp@chr5:147854240..147854249, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "The sensory system used for balance and hearing.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002105&oldid=3274052"