Personal tools

UBERON:0003351: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003351
|alt_id=
|name=pharyngeal epithelium
|namespace=
|def="An epithelium that is part of a pharynx [Obol]." [OBOL:automatic]
|xref=EMAPA:16551;;EMAPA:16708;;MA:0002725;;RETIRED_EHDAA2:0001460;;TAO:0001174;;XAO:0003202;;ZFA:0001174
|is_a=UBERON:0000490;;UBERON:0003929;;UBERON:0004807
|synonym="epithelial tissue of pharynx" EXACT [OBOL:automatic];;"epithelium of pharynx" EXACT [OBOL:automatic];;"pharynx epithelial tissue" EXACT [OBOL:automatic];;"pharynx epithelium" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelium that is part of a pharynx [Obol]." [OBOL:automatic]
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=UBERON:0007690
|develops_from=UBERON:0007690
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003351
|is_a=UBERON:0003929 ;;UBERON:0004807 ;;UBERON:0005911
|is_obsolete=
|located_in=
|located_in=
|name=pharyngeal epithelium
|namespace=
|obo_creation_date=
|part_of=UBERON:0001042
|part_of=UBERON:0001042
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side. Chen et al, 2007.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side. Chen et al, 2007.[TAO]" xsd:string
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="epithelial tissue of pharynx" EXACT [OBOL:automatic];;"epithelium of pharynx" EXACT [OBOL:automatic];;"pharynx epithelial tissue" EXACT [OBOL:automatic];;"pharynx epithelium" EXACT [OBOL:automatic]
|union_of=
|xref=EMAPA:16551;;EMAPA:16708;;MA:0002725;;RETIRED_EHDAA2:0001460;;TAO:0001174;;XAO:0003202;;ZFA:0001174
}}
}}

Revision as of 11:23, 12 September 2014

Name:pharyngeal epithelium
Definition:"An epithelium that is part of a pharynx [Obol]." [OBOL:automatic]
Xrefs:
links:

EMAPA:16551
EMAPA:16708
MA:0002725
RETIRED_EHDAA2:0001460
TAO:0001174
XAO:0003202

ZFA:0001174
Synonyms: "epithelial tissue of pharynx" EXACT [OBOL:automatic]
"epithelium of pharynx" EXACT [OBOL:automatic]
"pharynx epithelial tissue" EXACT [OBOL:automatic]
"pharynx epithelium" EXACT [OBOL:automatic]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003929(gut epithelium),UBERON:0004807(respiratory system epithelium),UBERON:0005911(endo-epithelium)
develops_from:UBERON:0007690(early pharyngeal endoderm)
part_of:UBERON:0001042(chordate pharynx)



Children

is a:UBERON:0005562 (thymus primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003351 (pharyngeal epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.83e-98FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_eb5f65a8a89c40b9ba146c3ed92df265p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
1.83e-98FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_eb5f65a8a89c40b9ba146c3ed92df265p19@AMOTL1
1.83e-98FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_eb5f65a8a89c40b9ba146c3ed92df265p19@AMOTL1
1.83e-98FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_eb5f65a8a89c40b9ba146c3ed92df265p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
2.58e-74FFCP PHASE2:Hg19::chr14:22927984..22927999,+#_74d10a5dcbda517dd54d1e4427e99860p4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
2.58e-74FFCP PHASE1:Hg19::chr14:22927984..22927999,+#_74d10a5dcbda517dd54d1e4427e99860p4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
1.76e-68FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_dd1bf493a82e8d4251eb4be92178d967p4@uc009bpa.1
1.76e-68FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_dd1bf493a82e8d4251eb4be92178d967p4@uc009bpa.1
2.4e-67FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_61a0d4089c3a67df0a5d55ec13bcfc3ap8@uc009bpa.1
2.4e-67FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_61a0d4089c3a67df0a5d55ec13bcfc3ap8@uc009bpa.1
2.83e-66FFCP PHASE1:Hg19::chr1:158332631..158332640,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:158332631..158332640, +
2.83e-66FFCP PHASE1:Hg19::chr15:58069758..58069762,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58069758..58069762, +
2.83e-66FFCP PHASE1:Hg19::chr15:58920068..58920073,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58920068..58920073, -
2.83e-66FFCP PHASE1:Hg19::chr3:142891652..142891662,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr3:142891652..142891662, -
2.83e-66FFCP PHASE1:Hg19::chr19:28877072..28877084,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr19:28877072..28877084, -
2.83e-66FFCP PHASE1:Hg19::chr2:86998329..86998374,+#_a17b34eef5c13577f74b7658a2b87f7cp16@RMND5A
2.83e-66FFCP PHASE1:Hg19::chr10:11486829..11486836,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr10:11486829..11486836, +
2.83e-66FFCP PHASE1:Hg19::chr10:11486877..11486886,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr10:11486877..11486886, +
2.83e-66FFCP PHASE1:Hg19::chr10:115022988..115023001,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr10:115022988..115023001, +
2.83e-66FFCP PHASE1:Hg19::chr10:115023005..115023015,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr10:115023005..115023015, +
2.83e-66FFCP PHASE1:Hg19::chr2:233102726..233102734,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr2:233102726..233102734, +
2.83e-66FFCP PHASE1:Hg19::chr1:158334207..158334219,-#_a17b34eef5c13577f74b7658a2b87f7cp1@AK128347
2.83e-66FFCP PHASE1:Hg19::chr10:115023055..115023072,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr10:115023055..115023072, +
2.83e-66FFCP PHASE1:Hg19::chr10:115023094..115023106,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr10:115023094..115023106, +
2.83e-66FFCP PHASE1:Hg19::chr1:2084380..2084413,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:2084380..2084413, -
2.83e-66FFCP PHASE1:Hg19::chr2:87018380..87018390,-#_a17b34eef5c13577f74b7658a2b87f7cp6@CD8A
2.83e-66FFCP PHASE1:Hg19::chr2:87017428..87017437,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr2:87017428..87017437, +
2.83e-66FFCP PHASE1:Hg19::chr20:58830811..58830825,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr20:58830811..58830825, +
2.83e-66FFCP PHASE1:Hg19::chr20:58830799..58830808,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr20:58830799..58830808, +
2.83e-66FFCP PHASE1:Hg19::chr1:160643289..160643296,+#_a17b34eef5c13577f74b7658a2b87f7cp4@ENST00000443928
2.83e-66FFCP PHASE1:Hg19::chr3:34517538..34517551,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr3:34517538..34517551, +
2.83e-66FFCP PHASE1:Hg19::chr17:76274646..76274658,-#_a17b34eef5c13577f74b7658a2b87f7cp2@ENST00000374945
2.83e-66FFCP PHASE1:Hg19::chr12:123559708..123559720,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:123559708..123559720, -
2.83e-66FFCP PHASE1:Hg19::chr14:22942319..22942322,+#_a17b34eef5c13577f74b7658a2b87f7cp4@uc001wec.2
2.83e-66FFCP PHASE1:Hg19::chr15:60131355..60131365,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:60131355..60131365, -
2.83e-66FFCP PHASE1:Hg19::chr20:58833004..58833011,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr20:58833004..58833011, +
2.83e-66FFCP PHASE1:Hg19::chr2:86992669..86992684,+#_a17b34eef5c13577f74b7658a2b87f7cp8@RMND5A
2.83e-66FFCP PHASE1:Hg19::chr12:47205180..47205187,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:47205180..47205187, +
2.83e-66FFCP PHASE1:Hg19::chr17:80866179..80866188,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr17:80866179..80866188, +
2.83e-66FFCP PHASE1:Hg19::chr15:56940732..56940741,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:56940732..56940741, +
2.83e-66FFCP PHASE1:Hg19::chr10:26726728..26726731,+#_a17b34eef5c13577f74b7658a2b87f7cp17@APBB1IP
2.83e-66FFCP PHASE1:Hg19::chr1:204494427..204494436,+#_a17b34eef5c13577f74b7658a2b87f7cp15@MDM4
2.83e-66FFCP PHASE1:Hg19::chr1:26320241..26320248,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:26320241..26320248, -
2.83e-66FFCP PHASE1:Hg19::chr1:32314477..32314482,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:32314477..32314482, +
2.83e-66FFCP PHASE1:Hg19::chr15:58069582..58069594,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58069582..58069594, +
2.83e-66FFCP PHASE1:Hg19::chr1:44035057..44035068,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:44035057..44035068, +
2.83e-66FFCP PHASE1:Hg19::chr20:30272266..30272271,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr20:30272266..30272271, -
2.83e-66FFCP PHASE1:Hg19::chr18:13437980..13437986,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr18:13437980..13437986, +
2.83e-66FFCP PHASE1:Hg19::chr1:55776031..55776038,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:55776031..55776038, -
2.83e-66FFCP PHASE1:Hg19::chr11:36589389..36589398,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr11:36589389..36589398, -
2.83e-66FFCP PHASE1:Hg19::chr2:87018900..87018905,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr2:87018900..87018905, +
2.83e-66FFCP PHASE1:Hg19::chr3:35682974..35682982,+#_a17b34eef5c13577f74b7658a2b87f7cp45@ARPP21
2.83e-66FFCP PHASE1:Hg19::chr13:99628347..99628352,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr13:99628347..99628352, -
2.83e-66FFCP PHASE1:Hg19::chr1:158260453..158260459,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:158260453..158260459, -
2.83e-66FFCP PHASE1:Hg19::chr1:158226030..158226041,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:158226030..158226041, +
2.83e-66FFCP PHASE1:Hg19::chr16:74359040..74359071,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr16:74359040..74359071, +
2.83e-66FFCP PHASE1:Hg19::chr2:227771357..227771363,+#_a17b34eef5c13577f74b7658a2b87f7cp10@RHBDD1
2.83e-66FFCP PHASE1:Hg19::chr12:123634449..123634460,-#_a17b34eef5c13577f74b7658a2b87f7cp25@PITPNM2
2.83e-66FFCP PHASE1:Hg19::chr12:59432175..59432191,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:59432175..59432191, +
2.83e-66FFCP PHASE1:Hg19::chr16:49633750..49633778,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr16:49633750..49633778, -
2.83e-66FFCP PHASE1:Hg19::chr2:227771044..227771054,+#_a17b34eef5c13577f74b7658a2b87f7cp9@RHBDD1
2.83e-66FFCP PHASE1:Hg19::chr12:123627753..123627760,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:123627753..123627760, +
2.83e-66FFCP PHASE1:Hg19::chr13:99628323..99628332,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr13:99628323..99628332, -
2.83e-66FFCP PHASE1:Hg19::chr12:123560793..123560802,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:123560793..123560802, +
2.83e-66FFCP PHASE1:Hg19::chr1:158170478..158170491,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:158170478..158170491, -
2.83e-66FFCP PHASE1:Hg19::chr22:48475770..48475779,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr22:48475770..48475779, -
2.83e-66FFCP PHASE1:Hg19::chr20:58830826..58830835,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr20:58830826..58830835, +
2.83e-66FFCP PHASE1:Hg19::chr3:155273127..155273136,-#_a17b34eef5c13577f74b7658a2b87f7cp4@AK093601
2.83e-66FFCP PHASE1:Hg19::chr15:60131337..60131352,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:60131337..60131352, -
2.83e-66FFCP PHASE1:Hg19::chr1:158260649..158260652,+#_a17b34eef5c13577f74b7658a2b87f7cp13@CD1C
2.83e-66FFCP PHASE1:Hg19::chr1:200500161..200500173,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:200500161..200500173, -
2.83e-66FFCP PHASE1:Hg19::chr15:56940722..56940731,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:56940722..56940731, +
2.83e-66FFCP PHASE1:Hg19::chr10:72542272..72542281,-#_a17b34eef5c13577f74b7658a2b87f7cp6@C10orf27
2.83e-66FFCP PHASE1:Hg19::chr12:123560608..123560615,-#_a17b34eef5c13577f74b7658a2b87f7cp24@PITPNM2
2.83e-66FFCP PHASE1:Hg19::chr1:204494413..204494420,+#_a17b34eef5c13577f74b7658a2b87f7cp17@MDM4
2.83e-66FFCP PHASE1:Hg19::chr13:99628388..99628399,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr13:99628388..99628399, -
2.83e-66FFCP PHASE1:Hg19::chr13:99628369..99628374,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr13:99628369..99628374, -
2.83e-66FFCP PHASE1:Hg19::chr3:19007717..19007728,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr3:19007717..19007728, +
2.83e-66FFCP PHASE1:Hg19::chr1:194245598..194245600,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:194245598..194245600, -
2.83e-66FFCP PHASE1:Hg19::chr1:204507243..204507252,+#_a17b34eef5c13577f74b7658a2b87f7cp19@MDM4
2.83e-66FFCP PHASE1:Hg19::chr15:60131313..60131324,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:60131313..60131324, -
2.83e-66FFCP PHASE1:Hg19::chr1:158259849..158259854,+#_a17b34eef5c13577f74b7658a2b87f7cp11@CD1C
2.83e-66FFCP PHASE1:Hg19::chr12:123607146..123607168,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:123607146..123607168, -
2.83e-66FFCP PHASE1:Hg19::chr15:58069384..58069408,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr15:58069384..58069408, +
2.83e-66FFCP PHASE1:Hg19::chr12:133413547..133413557,-#_a17b34eef5c13577f74b7658a2b87f7cp13@POLE
2.83e-66FFCP PHASE1:Hg19::chr2:57926329..57926337,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr2:57926329..57926337, -
2.83e-66FFCP PHASE1:Hg19::chr1:158303678..158303720,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:158303678..158303720, -
2.83e-66FFCP PHASE1:Hg19::chr20:58830665..58830675,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr20:58830665..58830675, +
2.83e-66FFCP PHASE1:Hg19::chr1:44035233..44035242,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:44035233..44035242, +
2.83e-66FFCP PHASE1:Hg19::chr14:98229095..98229108,-#_a17b34eef5c13577f74b7658a2b87f7cp1@ENST00000555187
2.83e-66FFCP PHASE1:Hg19::chr11:8954087..8954092,-#_a17b34eef5c13577f74b7658a2b87f7cp1@AB527792
2.83e-66FFCP PHASE1:Hg19::chr2:233184654..233184661,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr2:233184654..233184661, -
2.83e-66FFCP PHASE1:Hg19::chr2:242080265..242080277,-#_a17b34eef5c13577f74b7658a2b87f7cp20@PASK
2.83e-66FFCP PHASE1:Hg19::chr12:133414662..133414671,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:133414662..133414671, -
2.83e-66FFCP PHASE1:Hg19::chr1:158301280..158301298,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:158301280..158301298, +
2.83e-66FFCP PHASE1:Hg19::chr12:123559773..123559784,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr12:123559773..123559784, -
2.83e-66FFCP PHASE1:Hg19::chr17:4090402..4090406,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr17:4090402..4090406, -
2.83e-66FFCP PHASE1:Hg19::chr12:48225126..48225164,+#_a17b34eef5c13577f74b7658a2b87f7cp1@ENST00000548564, p1@ENST00000550720, p1@ENST00000550909
2.83e-66FFCP PHASE1:Hg19::chr11:36622593..36622605,+#_a17b34eef5c13577f74b7658a2b87f7cp@chr11:36622593..36622605, +
2.83e-66FFCP PHASE1:Hg19::chr1:55776022..55776029,-#_a17b34eef5c13577f74b7658a2b87f7cp@chr1:55776022..55776029, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side. Chen et al, 2007.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003351&oldid=3274227"