Personal tools

UBERON:0003457: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003457
|alt_id=
|name=head bone
|namespace=
|def="A bone that is part of a head [Obol]." [OBOL:automatic]
|xref=MA:0000576;;SCTID:118646007
|is_a=UBERON:0007914
|synonym="adult head bone" EXACT [OBOL:automatic];;"adult head bone organ" EXACT [OBOL:automatic];;"bone of adult head" EXACT [OBOL:automatic];;"bone of head" EXACT [OBOL:automatic];;"bone organ of adult head" EXACT [OBOL:automatic];;"bone organ of head" EXACT [OBOL:automatic];;"head bone organ" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A bone that is part of a head [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003457
|is_a=UBERON:0007914
|is_obsolete=
|located_in=
|located_in=
|name=head bone
|namespace=
|obo_creation_date=
|part_of=UBERON:0000033
|part_of=UBERON:0000033
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="adult head bone" EXACT [OBOL:automatic];;"adult head bone organ" EXACT [OBOL:automatic];;"bone of adult head" EXACT [OBOL:automatic];;"bone of head" EXACT [OBOL:automatic];;"bone organ of adult head" EXACT [OBOL:automatic];;"bone organ of head" EXACT [OBOL:automatic];;"head bone organ" EXACT [OBOL:automatic]
|union_of=
|xref=MA:0000576;;SCTID:118646007
}}
}}

Revision as of 11:24, 12 September 2014

Name:head bone
Definition:"A bone that is part of a head [Obol]." [OBOL:automatic]
Xrefs:
links:

MA:0000576

SCTID:118646007
Synonyms: "adult head bone" EXACT [OBOL:automatic]
"adult head bone organ" EXACT [OBOL:automatic]
"bone of adult head" EXACT [OBOL:automatic]
"bone of head" EXACT [OBOL:automatic]
"bone organ of adult head" EXACT [OBOL:automatic]
"bone organ of head" EXACT [OBOL:automatic]
"head bone organ" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0007914(head or neck bone)
part_of:UBERON:0000033(head)



Children

is a:UBERON:0002397 (maxilla),UBERON:0003462 (facial bone),UBERON:0004766 (cranial bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003457 (head bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_053239a5c279b55de3cd36b9b14b37cbp14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_053239a5c279b55de3cd36b9b14b37cbp14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_a5461e78606393fc6e4c26b3fd452e96p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_a5461e78606393fc6e4c26b3fd452e96p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_a5461e78606393fc6e4c26b3fd452e96p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_a5461e78606393fc6e4c26b3fd452e96p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_a5461e78606393fc6e4c26b3fd452e96p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_a5461e78606393fc6e4c26b3fd452e96p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_a5461e78606393fc6e4c26b3fd452e96p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_a5461e78606393fc6e4c26b3fd452e96p13@C17orf67
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_df4e2f44fb501671f107a758dc1e06a1p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_df4e2f44fb501671f107a758dc1e06a1p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_df4e2f44fb501671f107a758dc1e06a1p2@Otof
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_df4e2f44fb501671f107a758dc1e06a1p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_df4e2f44fb501671f107a758dc1e06a1p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_df4e2f44fb501671f107a758dc1e06a1p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_df4e2f44fb501671f107a758dc1e06a1p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_df4e2f44fb501671f107a758dc1e06a1p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_df4e2f44fb501671f107a758dc1e06a1p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_df4e2f44fb501671f107a758dc1e06a1p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_df4e2f44fb501671f107a758dc1e06a1p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_df4e2f44fb501671f107a758dc1e06a1p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_df4e2f44fb501671f107a758dc1e06a1p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_df4e2f44fb501671f107a758dc1e06a1p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_df4e2f44fb501671f107a758dc1e06a1p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_df4e2f44fb501671f107a758dc1e06a1p3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_df4e2f44fb501671f107a758dc1e06a1p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_df4e2f44fb501671f107a758dc1e06a1p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_df4e2f44fb501671f107a758dc1e06a1p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_df4e2f44fb501671f107a758dc1e06a1p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_df4e2f44fb501671f107a758dc1e06a1p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_df4e2f44fb501671f107a758dc1e06a1p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_df4e2f44fb501671f107a758dc1e06a1p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_df4e2f44fb501671f107a758dc1e06a1p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_df4e2f44fb501671f107a758dc1e06a1p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_df4e2f44fb501671f107a758dc1e06a1p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_df4e2f44fb501671f107a758dc1e06a1p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_df4e2f44fb501671f107a758dc1e06a1p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_df4e2f44fb501671f107a758dc1e06a1p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_df4e2f44fb501671f107a758dc1e06a1p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_df4e2f44fb501671f107a758dc1e06a1p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_df4e2f44fb501671f107a758dc1e06a1p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_df4e2f44fb501671f107a758dc1e06a1p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_df4e2f44fb501671f107a758dc1e06a1p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_df4e2f44fb501671f107a758dc1e06a1p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_df4e2f44fb501671f107a758dc1e06a1p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_df4e2f44fb501671f107a758dc1e06a1p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_df4e2f44fb501671f107a758dc1e06a1p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_df4e2f44fb501671f107a758dc1e06a1p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_df4e2f44fb501671f107a758dc1e06a1p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_df4e2f44fb501671f107a758dc1e06a1p5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_df4e2f44fb501671f107a758dc1e06a1p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_df4e2f44fb501671f107a758dc1e06a1p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_df4e2f44fb501671f107a758dc1e06a1p1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_df4e2f44fb501671f107a758dc1e06a1p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_df4e2f44fb501671f107a758dc1e06a1p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_df4e2f44fb501671f107a758dc1e06a1p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_df4e2f44fb501671f107a758dc1e06a1p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_df4e2f44fb501671f107a758dc1e06a1p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_df4e2f44fb501671f107a758dc1e06a1p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_df4e2f44fb501671f107a758dc1e06a1p1@Otogl
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_df4e2f44fb501671f107a758dc1e06a1p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_df4e2f44fb501671f107a758dc1e06a1p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_df4e2f44fb501671f107a758dc1e06a1p2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_df4e2f44fb501671f107a758dc1e06a1p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_df4e2f44fb501671f107a758dc1e06a1p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_df4e2f44fb501671f107a758dc1e06a1p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_df4e2f44fb501671f107a758dc1e06a1p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_df4e2f44fb501671f107a758dc1e06a1p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_df4e2f44fb501671f107a758dc1e06a1p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_df4e2f44fb501671f107a758dc1e06a1p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_df4e2f44fb501671f107a758dc1e06a1p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_df4e2f44fb501671f107a758dc1e06a1p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_df4e2f44fb501671f107a758dc1e06a1p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_df4e2f44fb501671f107a758dc1e06a1p1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_df4e2f44fb501671f107a758dc1e06a1p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_df4e2f44fb501671f107a758dc1e06a1p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_df4e2f44fb501671f107a758dc1e06a1p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_df4e2f44fb501671f107a758dc1e06a1p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_df4e2f44fb501671f107a758dc1e06a1p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_df4e2f44fb501671f107a758dc1e06a1p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_df4e2f44fb501671f107a758dc1e06a1p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_df4e2f44fb501671f107a758dc1e06a1p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_df4e2f44fb501671f107a758dc1e06a1p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_df4e2f44fb501671f107a758dc1e06a1p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_df4e2f44fb501671f107a758dc1e06a1p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_df4e2f44fb501671f107a758dc1e06a1p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_df4e2f44fb501671f107a758dc1e06a1p3@Tecta
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_df4e2f44fb501671f107a758dc1e06a1p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_df4e2f44fb501671f107a758dc1e06a1p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_df4e2f44fb501671f107a758dc1e06a1p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_df4e2f44fb501671f107a758dc1e06a1p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_df4e2f44fb501671f107a758dc1e06a1p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_df4e2f44fb501671f107a758dc1e06a1p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_df4e2f44fb501671f107a758dc1e06a1p9@Otof

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003457&oldid=3274231"